Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8459455.1

Orthogroup ID

OG0002063

Physical Location & Seq

Genomic Coordinates Reverse (-)

243 .. 1721

Gene Structure 1479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8459455.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

atgcataccaatccagttcaagaagaacacaaccatgtcacccccatctccgaaatgaacaatgatcgcctagcttccatgtacaagaagatcgcagaccctccgagactcctcagcaatgccgccggcaaagactcctgctgcatcttccgagtcccgcagagtctcctcgagattaacggcaagtcgtaccagccccacatcgtctccattggtcccttccaccgcggccagccccacctcagaatgatcgaggagcacaagtggcgttacctgggctctctgctttcaagaacagagcccaaagggttgactctccagcactacttgaagtccatagagccaatggaagatagagtcagagagtcttactctgaaacaatccacctcagtagtgatgagttcgtcgaaatgatggttgttgatggttgcttcttaatcgagttgtttcgaaaatttgaccgtgtggttcggtttgagcgcgatgatccactcatcaatatgttctgggtaattccgtttatggttagagattttcttcgtcttgagaaccaaatcccctactttatacttgagcatttgtatgatctgataaccaagtcggaagatcgtcaagactctgtgaagtctttgtccttgcttgctttaaacttcttcaacaaccatatggacaggccgaaagaagtcattgcaaagctgcataatcttacaggtaagcatttgcttgacttactccggtcaagtgtgataccagccgaccatgttgaaccaggacacaagaatagtaccccaacccacattatacattgtatttcaaagcttcgtcgcgctggaatcaagctcaatcctcctaaagaatacgaaagcttcttggcgatcaagttcaagcgtggagttatcgaaatgcccccaatcatcatagacgatttcatgagctcgttcttgttgaactgtgtagcctatgagcaatgccacaagtcatgctccaaacacatcaccgcttacgcaacgttgctggattacctagtgaatacttacaaggatgtcgagtatttggctgacagaaacataatcgagaattgcttcggaaacgatgaggaggttgctcattttattaacaatttgggtaaggatgtggcttttgatggtgaaagatgttatctgtcgaaattgttcaatgatgttcatcagtattacagcaatagtaggcatgttcaatgggcaagcttcaagtacacttactttgacactccatggtcgtttatttcggcttttgctgcgttgattttgctcatattcaccttgctgcagaccttatacactgttttaagttattatcattcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

448

Amino Acids

52.32

Weight (kDa)

6.45

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36430
fragaria_vesca	FvH4_6g18050 FvH4_6g18060 FvH4_6g18063
malus_domestica	MD12G1019200.v1.1 MD14G1017100.v1.1
prunus_persica	Prupe.7G116000_v2.0.a1 Prupe.7G116100_v2.0.a1 Prupe.7G116200_v2.0.a1
pyrus_communis	pycom12g01590 pycom12g01610 pycom14g01490
rosa_chinensis	RchiOBHm_Chr3g0472321 RchiOBHm_Chr3g0472331 RchiOBHm_Chr3g0472341
rosa_laevigata	RLG00000024087 RLG00000024112
rosa_multiflora	Rmu_co8308659.1_g000001 Rmu_co8344587.1_g000001 Rmu_co8459455.1_g000001 Rmu_sc0000090.1_g000030 Rmu_sc0000627.1_g000002 Rmu_sc0002532.1_g000004 Rmu_sc0026961.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409010 Rroxscaffold_6G00409020 Rroxscaffold_6G00409030 Rroxscaffold_6G00409070 Rroxscaffold_6G00409360
rosa_rugosa	Rorug03G0123900 Rorug03G0124000 Rorug03G0124100 Rorug03G0124200
rosa_samantha	Rh3AG176300 Rh3AG176500 Rh3BG202000 Rh3BG202100 Rh3BG202200 Rh3DG173000 Rh3DG173200 Rh3DG173300
rosa_wichuraiana	Rw3G016490 Rw3G016500 Rw3G016740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	228, 483, 828
AciI	CCGC	5 cut(s)	123, 158, 226, 228, 999
AclI	AACGTT	1 cut(s)	1010
AclWI	GGATC	1 cut(s)	482
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	1 cut(s)	455
AfaI	GTAC	4 cut(s)	83, 191, 787, 1235
AjnI	CCWGG	2 cut(s)	273, 769
AluBI	AGCT	7 cut(s)	74, 697, 820, 841, 867, 936, 1227
AluI	AGCT	7 cut(s)	74, 697, 820, 841, 867, 936, 1227
Alw21I	GWGCWC	2 cut(s)	261, 938
Alw26I	GTCTC	3 cut(s)	100, 170, 211
AlwI	GGATC	1 cut(s)	482
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	2 cut(s)	229, 674
ApeKI	GCWGC	4 cut(s)	141, 697, 1277, 1306
ApoI	RAATTY	1 cut(s)	455
Asp700I	GAANNNNTTC	2 cut(s)	1082, 1172
AspLEI	GCGC	2 cut(s)	483, 830
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	4 cut(s)	31, 988, 1160, 1291
AsuII	TTCGAA	1 cut(s)	451
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	215
BanII	GRGCYC	3 cut(s)	281, 303, 938
Bbv12I	GWGCWC	2 cut(s)	261, 938
BbvCI	CCTCAGC	1 cut(s)	113
BbvI	GCAGC	4 cut(s)	128, 684, 1264, 1293
BccI	CCATC	4 cut(s)	53, 409, 419, 1139
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	2 cut(s)	275, 771
BcoDI	GTCTC	3 cut(s)	100, 170, 211
BfaI	CTAG	2 cut(s)	71, 1025
BfmI	CTRYAG	1 cut(s)	1307
BisI	GCNGC	6 cut(s)	123, 142, 229, 698, 1278, 1307
BlsI	GCNGC	6 cut(s)	124, 143, 230, 699, 1279, 1308
Bme1390I	CCNGG	2 cut(s)	275, 771
Bme18I	GGWCC	1 cut(s)	215
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	2 cut(s)	275, 771
BmsI	GCATC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
BpmI	CTGGAG	1 cut(s)	302
Bpu10I	CCTNAGC	1 cut(s)	113
Bpu14I	TTCGAA	1 cut(s)	451
BpuEI	CTTGAG	2 cut(s)	566, 593
BsaBI	GATNNNNATC	1 cut(s)	1185
BsaJI	CCNNGG	3 cut(s)	226, 274, 1253
BsaWI	WCCGGW	1 cut(s)	735
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 248, 278
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	14
Bse3DI	GCAATG	3 cut(s)	124, 687, 974
Bse8I	GATNNNNATC	1 cut(s)	1185
BseBI	CCWGG	2 cut(s)	275, 771
BseDI	CCNNGG	3 cut(s)	226, 274, 1253
BseGI	GGATG	2 cut(s)	1048, 1138
BseJI	GATNNNNATC	1 cut(s)	1185
BseMI	GCAATG	3 cut(s)	124, 687, 974
BseMII	CTCAG	3 cut(s)	127, 256, 403
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	4 cut(s)	101, 158, 269, 1112
BseXI	GCAGC	4 cut(s)	128, 684, 1264, 1293
Bsh1236I	CGCG	3 cut(s)	228, 483, 828
BshFI	GGCC	2 cut(s)	231, 676
BsiHKAI	GWGCWC	2 cut(s)	261, 938
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	126, 736
BslFI	GGGAC	2 cut(s)	140, 201
BsmAI	GTCTC	3 cut(s)	100, 170, 211
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	2 cut(s)	140, 201
BsnI	GGCC	2 cut(s)	231, 676
BsoBI	CYCGRG	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	451
Bsp1286I	GDGCHC	4 cut(s)	261, 281, 303, 938
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	7 cut(s)	64, 90, 249, 487, 586, 607, 876
Bsp19I	CCATGG	1 cut(s)	1253
BspACI	CCGC	5 cut(s)	123, 158, 226, 228, 999
BspANI	GGCC	2 cut(s)	231, 676
BspCNI	CTCAG	3 cut(s)	126, 255, 402
BspFNI	CGCG	3 cut(s)	228, 483, 828
BspHI	TCATGA	1 cut(s)	930
BspLI	GGNNCC	1 cut(s)	217
BspMAI	CTGCAG	1 cut(s)	1311
BspPI	GGATC	1 cut(s)	482
BspT104I	TTCGAA	1 cut(s)	451
BsrDI	GCAATG	3 cut(s)	124, 687, 974
BsrFI	RCCGGY	1 cut(s)	125
BsrGI	TGTACA	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	3 cut(s)	226, 274, 1253
BssMI	GATC	7 cut(s)	64, 90, 249, 487, 586, 607, 876
BssT1I	CCWWGG	1 cut(s)	1253
Bst2UI	CCWGG	2 cut(s)	275, 771
Bst4CI	ACNGT	3 cut(s)	464, 953, 1324
BstAUI	TGTACA	1 cut(s)	81
BstBI	TTCGAA	1 cut(s)	451
BstC8I	GCNNGC	4 cut(s)	127, 233, 642, 1225
BstDEI	CTNAG	3 cut(s)	113, 242, 389
BstDSI	CCRYGG	2 cut(s)	226, 1253
BstF5I	GGATG	2 cut(s)	1048, 1138
BstFNI	CGCG	3 cut(s)	228, 483, 828
BstHHI	GCGC	2 cut(s)	483, 830
BstKTI	GATC	7 cut(s)	67, 93, 252, 490, 589, 610, 879
BstMAI	GTCTC	3 cut(s)	100, 170, 211
BstMBI	GATC	7 cut(s)	64, 90, 249, 487, 586, 607, 876
BstMWI	GCNNNNNNNGC	2 cut(s)	265, 1277
BstNI	CCWGG	2 cut(s)	275, 771
BstNSI	RCATGY	1 cut(s)	1214
BstSCI	CCNGG	2 cut(s)	273, 769
BstSFI	CTRYAG	1 cut(s)	1307
BstUI	CGCG	3 cut(s)	228, 483, 828
BstV1I	GCAGC	4 cut(s)	128, 684, 1264, 1293
BsuRI	GGCC	2 cut(s)	231, 676
BtgI	CCRYGG	2 cut(s)	226, 1253
BtgZI	GCGATG	1 cut(s)	498
BtsCI	GGATG	2 cut(s)	1048, 1138
BtsIMutI	CAGTG	1 cut(s)	1320
Cac8I	GCNNGC	4 cut(s)	127, 233, 642, 1225
CciI	TCATGA	1 cut(s)	930
CfoI	GCGC	2 cut(s)	483, 830
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	215
Cfr42I	CCGCGG	1 cut(s)	229
Csp6I	GTAC	4 cut(s)	82, 190, 786, 1234
CviAII	CATG	7 cut(s)	35, 79, 761, 931, 981, 1211, 1254
CviQI	GTAC	4 cut(s)	82, 190, 786, 1234
DdeI	CTNAG	3 cut(s)	113, 242, 389
DpnI	GATC	7 cut(s)	66, 92, 251, 489, 588, 609, 878
DpnII	GATC	7 cut(s)	64, 90, 249, 487, 586, 607, 876
DraI	TTTAAA	1 cut(s)	648
EaeI	YGGCCR	1 cut(s)	229
Ecl136II	GAGCTC	1 cut(s)	936
Eco130I	CCWWGG	1 cut(s)	1253
Eco24I	GRGCYC	3 cut(s)	281, 303, 938
Eco47I	GGWCC	1 cut(s)	215
Eco53kI	GAGCTC	1 cut(s)	936
Eco88I	CYCGRG	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	936
EcoRII	CCWGG	2 cut(s)	273, 769
EcoT14I	CCWWGG	1 cut(s)	1253
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	3 cut(s)	281, 303, 938
ErhI	CCWWGG	1 cut(s)	1253
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	7 cut(s)	38, 82, 764, 934, 984, 1214, 1257
FaqI	GGGAC	2 cut(s)	140, 201
FatI	CATG	7 cut(s)	34, 78, 760, 930, 980, 1210, 1253
FauI	CCCGC	1 cut(s)	165
FauNDI	CATATG	1 cut(s)	666
Fnu4HI	GCNGC	6 cut(s)	123, 142, 229, 698, 1278, 1307
FokI	GGATG	2 cut(s)	1055, 1145
FriOI	GRGCYC	3 cut(s)	281, 303, 938
Fsp4HI	GCNGC	6 cut(s)	123, 142, 229, 698, 1278, 1307
FspBI	CTAG	2 cut(s)	71, 1025
GlaI	GCGC	2 cut(s)	482, 829
GluI	GCNGC	6 cut(s)	123, 142, 229, 698, 1278, 1307
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	2 cut(s)	231, 676
HapII	CCGG	2 cut(s)	126, 736
HhaI	GCGC	2 cut(s)	483, 830
Hin1II	CATG	7 cut(s)	38, 82, 764, 934, 984, 1214, 1257
Hin6I	GCGC	2 cut(s)	481, 828
HinP1I	GCGC	2 cut(s)	481, 828
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HindIII	AAGCTT	3 cut(s)	818, 865, 1225
HinfI	GANTC	9 cut(s)	108, 134, 153, 163, 313, 357, 365, 617, 834
HpaII	CCGG	2 cut(s)	126, 736
HphI	GGTGA	4 cut(s)	31, 988, 1160, 1291
Hpy166II	GTNNAC	2 cut(s)	312, 1236
Hpy188I	TCNGA	9 cut(s)	52, 105, 152, 245, 362, 376, 591, 604, 1088
Hpy188III	TCNNGA	8 cut(s)	20, 172, 291, 545, 614, 931, 1075, 1344
Hpy8I	GTNNAC	2 cut(s)	312, 1236
Hpy99I	CGWCG	2 cut(s)	410, 828
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	3 cut(s)	464, 953, 1324
HpyCH4IV	ACGT	1 cut(s)	1010
HpyCH4V	TGCA	5 cut(s)	4, 144, 692, 700, 1309
HpyF10VI	GCNNNNNNNGC	2 cut(s)	265, 1277
HpyF3I	CTNAG	3 cut(s)	113, 242, 389
HpySE526I	ACGT	1 cut(s)	1010
Hsp92II	CATG	7 cut(s)	38, 82, 764, 934, 984, 1214, 1257
HspAI	GCGC	2 cut(s)	481, 828
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
KspI	CCGCGG	1 cut(s)	229
Kzo9I	GATC	7 cut(s)	64, 90, 249, 487, 586, 607, 876
LmnI	GCTCC	2 cut(s)	256, 989
Lsp1109I	GCAGC	4 cut(s)	128, 684, 1264, 1293
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	2 cut(s)	71, 1025
MaeII	ACGT	1 cut(s)	1010
MaeIII	GTNAC	2 cut(s)	37, 269
MalI	GATC	7 cut(s)	66, 92, 251, 489, 588, 609, 878
MboI	GATC	7 cut(s)	64, 90, 249, 487, 586, 607, 876
MboII	GAAGA	7 cut(s)	35, 100, 139, 362, 530, 617, 646
MhlI	GDGCHC	4 cut(s)	261, 281, 303, 938
MluCI	AATT	5 cut(s)	455, 513, 1078, 1120, 1169
MlyI	GAGTC	8 cut(s)	102, 128, 162, 172, 307, 366, 374, 611
MmeI	TCCRAC	1 cut(s)	582
MnlI	CCTC	9 cut(s)	111, 122, 179, 247, 251, 398, 858, 1090, 1093
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	125
MroXI	GAANNNNTTC	2 cut(s)	1082, 1172
MseI	TTAA	5 cut(s)	177, 437, 647, 1116, 1328
MslI	CAYNNNNRTG	3 cut(s)	33, 500, 582
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	2 cut(s)	126, 736
MspR9I	CCNGG	2 cut(s)	275, 771
MvaI	CCWGG	2 cut(s)	275, 771
MvnI	CGCG	3 cut(s)	228, 483, 828
MwoI	GCNNNNNNNGC	2 cut(s)	265, 1277
NaeI	GCCGGC	1 cut(s)	127
NcoI	CCATGG	1 cut(s)	1253
NdeI	CATATG	1 cut(s)	666
NdeII	GATC	7 cut(s)	64, 90, 249, 487, 586, 607, 876
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	7 cut(s)	38, 82, 764, 934, 984, 1214, 1257
NlaIV	GGNNCC	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	1214
NspV	TTCGAA	1 cut(s)	451
PaeR7I	CTCGAG	1 cut(s)	170
PagI	TCATGA	1 cut(s)	930
PdiI	GCCGGC	1 cut(s)	127
PdmI	GAANNNNTTC	2 cut(s)	1082, 1172
PfeI	GAWTC	1 cut(s)	834
PkrI	GCNGC	6 cut(s)	124, 143, 230, 699, 1279, 1308
PleI	GAGTC	8 cut(s)	102, 128, 161, 171, 307, 365, 373, 611
PpsI	GAGTC	8 cut(s)	102, 128, 161, 171, 307, 365, 373, 611
Psp124BI	GAGCTC	1 cut(s)	938
Psp1406I	AACGTT	1 cut(s)	1010
Psp6I	CCWGG	2 cut(s)	273, 769
PspGI	CCWGG	2 cut(s)	273, 769
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	1311
RsaI	GTAC	4 cut(s)	83, 191, 787, 1235
RsaNI	GTAC	4 cut(s)	82, 190, 786, 1234
RseI	CAYNNNNRTG	3 cut(s)	33, 500, 582
SacI	GAGCTC	1 cut(s)	938
SacII	CCGCGG	1 cut(s)	229
SaqAI	TTAA	5 cut(s)	177, 437, 647, 1116, 1328
SatI	GCNGC	6 cut(s)	123, 142, 229, 698, 1278, 1307
Sau3AI	GATC	7 cut(s)	64, 90, 249, 487, 586, 607, 876
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	8 cut(s)	102, 128, 162, 172, 307, 366, 374, 611
ScrFI	CCNGG	2 cut(s)	275, 771
SduI	GDGCHC	4 cut(s)	261, 281, 303, 938
SfaNI	GCATC	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	1307
Sfr274I	CTCGAG	1 cut(s)	170
Sfr303I	CCGCGG	1 cut(s)	229
SfuI	TTCGAA	1 cut(s)	451
SgrBI	CCGCGG	1 cut(s)	229
SinI	GGWCC	1 cut(s)	215
SlaI	CTCGAG	1 cut(s)	170
SmiMI	CAYNNNNRTG	3 cut(s)	33, 500, 582
SmlI	CTYRAG	3 cut(s)	170, 545, 572
SmoI	CTYRAG	3 cut(s)	170, 545, 572
Sse9I	AATT	5 cut(s)	455, 513, 1078, 1120, 1169
SsiI	CCGC	5 cut(s)	123, 158, 226, 228, 999
SspMI	CTAG	2 cut(s)	71, 1025
SstI	GAGCTC	1 cut(s)	938
StyD4I	CCNGG	2 cut(s)	273, 769
StyI	CCWWGG	1 cut(s)	1253
TaaI	ACNGT	3 cut(s)	464, 953, 1324
TaiI	ACGT	1 cut(s)	1013
TaqI	TCGA	9 cut(s)	171, 252, 408, 441, 451, 900, 1047, 1074, 1166
TasI	AATT	5 cut(s)	455, 513, 1078, 1120, 1169
TatI	WGTACW	2 cut(s)	81, 1233
TauI	GCSGC	2 cut(s)	125, 231
TfiI	GAWTC	1 cut(s)	834
Tru1I	TTAA	5 cut(s)	177, 437, 647, 1116, 1328
Tru9I	TTAA	5 cut(s)	177, 437, 647, 1116, 1328
TscAI	CASTG	1 cut(s)	1327
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	4 cut(s)	141, 697, 1277, 1306
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	3 cut(s)	71, 919, 1175
TspGWI	ACGGA	1 cut(s)	507
TspRI	CASTG	1 cut(s)	1327
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	1 cut(s)	455
XceI	RCATGY	1 cut(s)	1214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XhoI	CTCGAG	1 cut(s)	170
XmnI	GAANNNNTTC	2 cut(s)	1082, 1172
XspI	CTAG	2 cut(s)	71, 1025
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.