RchiOBHm_Chr3g0472321

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002063
Physical Location & Seq
Reverse (-)
18205906 .. 18206418
513 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43803

Sequence Viewer

Length: 390 bp
ATGTCTTCATTGCCTTCATCTTTTCCTCATCCCACAAGACCAGTTAGCATAGACCAATACAATGCTCAACAAGTTGTTTATGATGAAACTTTTGTCCATGGGGCACAACTAACTGAAGACGAAGATAGGGAAGGTCTTGATGGATTGCTTGGGTTCGTGTCAGAGCTTATTGAAAAAGTTCCTGCAAAACTAGAACACATATTACTTGATAAATATATGGATCATAGAGAAAATGAAGGTCCTGTCATTGTGGAAAGGGGTACTACTACTACTACTACTAGTCGCGGTCTTCAAGGAACTGGGGAATCATCACCAAAGCTTGAGCGCTTCAAGATCCGAACTGTGGATTTTGGGGATGATGTCAAGGAGGAAGAGAACGTGAAGCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.53

Weight (kDa)

4.79

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 285
AciI CCGC 1 cut(s) 285
AclWI GGATC 2 cut(s) 228, 328
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 1 cut(s) 262
AfeI AGCGCT 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 3 cut(s) 173, 293, 331
AhlI ACTAGT 1 cut(s) 278
AluBI AGCT 2 cut(s) 166, 319
AluI AGCT 2 cut(s) 166, 319
AlwI GGATC 2 cut(s) 228, 328
Aor51HI AGCGCT 1 cut(s) 326
Asp700I GAANNNNTTC 1 cut(s) 177
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 303
AvaII GGWCC 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 106
BbsI GAAGAC 2 cut(s) 123, 281
BccI CCATC 1 cut(s) 134
BcuI ACTAGT 1 cut(s) 278
BfaI CTAG 2 cut(s) 191, 279
BfoI RGCGCY 1 cut(s) 328
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmrI ACTGGG 1 cut(s) 309
BmuI ACTGGG 1 cut(s) 309
BpiI GAAGAC 2 cut(s) 123, 281
BpuEI CTTGAG 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 97
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse1I ACTGG 2 cut(s) 41, 304
Bse3DI GCAATG 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 2 cut(s) 28, 361
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMI GCAATG 1 cut(s) 8
BseNI ACTGG 2 cut(s) 41, 304
BseSI GKGCMC 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 343
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 2 cut(s) 220, 333
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 1 cut(s) 285
BspFNI CGCG 1 cut(s) 285
BspPI GGATC 2 cut(s) 228, 328
BsrDI GCAATG 1 cut(s) 8
BsrI ACTGG 2 cut(s) 41, 304
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 2 cut(s) 220, 333
BssT1I CCWWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 1 cut(s) 366
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 2 cut(s) 28, 361
BstFNI CGCG 1 cut(s) 285
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 2 cut(s) 223, 336
BstMBI GATC 2 cut(s) 220, 333
BstSLI GKGCMC 1 cut(s) 106
BstUI CGCG 1 cut(s) 285
BstV2I GAAGAC 2 cut(s) 123, 281
BstX2I RGATCY 1 cut(s) 333
BstYI RGATCY 1 cut(s) 333
BtgI CCRYGG 1 cut(s) 97
BtsCI GGATG 2 cut(s) 28, 361
CfoI GCGC 1 cut(s) 327
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 261
CviAII CATG 1 cut(s) 98
CviJI RGCY 2 cut(s) 166, 319
CviKI_1 RGCY 2 cut(s) 166, 319
CviQI GTAC 1 cut(s) 261
DpnI GATC 2 cut(s) 222, 335
DpnII GATC 2 cut(s) 220, 333
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 239
Eco47III AGCGCT 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 135
EcoO109I RGGNCCY 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 1 cut(s) 101
FaiI YATR 7 cut(s) 50, 81, 99, 200, 216, 218, 225
FatI CATG 1 cut(s) 97
FokI GGATG 2 cut(s) 15, 368
FspBI CTAG 2 cut(s) 191, 279
GlaI GCGC 1 cut(s) 326
HaeII RGCGCY 1 cut(s) 328
HhaI GCGC 1 cut(s) 327
Hin1II CATG 1 cut(s) 101
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 1 cut(s) 305
HphI GGTGA 1 cut(s) 303
Hpy188I TCNGA 2 cut(s) 163, 338
Hpy188III TCNNGA 2 cut(s) 137, 331
HpyAV CCTTC 3 cut(s) 24, 125, 230
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 1 cut(s) 185
HpySE526I ACGT 1 cut(s) 378
Hsp92II CATG 1 cut(s) 101
HspAI GCGC 1 cut(s) 325
Kzo9I GATC 2 cut(s) 220, 333
LpnPI CCDG 4 cut(s) 54, 195, 255, 285
MaeI CTAG 2 cut(s) 191, 279
MaeII ACGT 1 cut(s) 378
MalI GATC 2 cut(s) 222, 335
MboI GATC 2 cut(s) 220, 333
MboII GAAGA 4 cut(s) 128, 134, 281, 383
MflI RGATCY 1 cut(s) 333
MhlI GDGCHC 1 cut(s) 106
MnlI CCTC 2 cut(s) 36, 361
MroXI GAANNNNTTC 1 cut(s) 177
MvnI CGCG 1 cut(s) 285
NcoI CCATGG 1 cut(s) 97
NdeII GATC 2 cut(s) 220, 333
NlaIII CATG 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 305
PpuMI RGGWCCY 1 cut(s) 239
Psp5II RGGWCCY 1 cut(s) 239
PspPI GGNCC 1 cut(s) 239
PspPPI RGGWCCY 1 cut(s) 239
PsrI GAACNNNNNNTAC 2 cut(s) 186, 218
PsuI RGATCY 1 cut(s) 333
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
Sau3AI GATC 2 cut(s) 220, 333
Sau96I GGNCC 1 cut(s) 239
SduI GDGCHC 1 cut(s) 106
SetI ASST 5 cut(s) 136, 168, 241, 321, 381
SinI GGWCC 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SpeI ACTAGT 1 cut(s) 278
SsiI CCGC 1 cut(s) 285
SspMI CTAG 2 cut(s) 191, 279
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 1 cut(s) 381
TfiI GAWTC 1 cut(s) 305
TspDTI ATGAA 3 cut(s) 6, 99, 249
VpaK11BI GGWCC 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 2 cut(s) 191, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.