Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002063

Physical Location & Seq

Genomic Coordinates Forward (+)

31658599 .. 31664026

Gene Structure 5428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024087

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3081 bp

ATGCATACCAATCCAGTTCAAGAAGAACACAACCATGTCACCCCCATCTCCGAAATTAACAATGATCGCCTAGCTTCCATGTACAAGAAGATCGCAGACCCTCCAAGACTCCTCAGCAATGCCGCCGGCAAAGACTCCTGCTGCATCTTCCGAGTCCCGCAGAGCCTCCTCGAGATTAACGGCAAGTCGTACCAGCCCCACATCGTCTCCATCGGTCCCTTCCACCGCGGCCAGCCTCACCTCAGAATGATTGAGGAGCACAAGTGGCGTTACCTGGGCTCTCTGCTTTCAAGAACAGAGCCCAGAGGGTTGACTCTCCAGCACTACTTGAAGTCCATAGAGCCAATGGAAGATAGAGCCAGAGAGTGCTACTCTGAAACAATCCACCTCAGTAGTGAGGAGTTCGTCGAAATGATGGTTGTTGATGGTTGCTTCTTAATCGAGTTGTTTCGAAAATATGGCCGTGTGGTTCGGTTTGAGCGCGATGATCCACTCATTAATATGTTCTGGATACTTCCGTTTATGGTTAGAGATTTTCTTCGTCTTGAGAACCAAATTCCCTACTTTATTCTTGAGCATTTGTATGATCTGATAACTATGTGGGAAGATCGTCAAAACTCTCTGAAGTCTTTGTCCTTGCTTGCTTTGGACTTCTTCAACAACCATATGCAGAGGCCGGACGAAGTCATTGCAAAGCTGCATAATCTTACAGGTAAGCATTTGCTTGACTTACTCCGCTCAAGTGTGATACCAGCCGAACATGTTGAACCAGGACGCAAGAATAGTACCCCAACCCACATTATACATTGTATTTCAAAGCTTCGTCGCGCTGGAATTAAGCTCAATCCTCCTAAAGAATACGAAAGCTTCTTGGCGATCAAGTTCAAGCGTGGAGTTATCGAAATGCCCCCAATCATCATAGACGATTTCATGAGCTCGTTCTTGTTGAACTGTGTAGCCTATGAGCAATGCCACAAGTCATGCTCCAAACACATCACCGCTTACGCAACGTTGCTGGATTACCTAGTGAATACTTACAAGGATGTCGAGTATTTGACTGACAGAAACATAATCGAGAATTGCTTCGGAAACGATGAGGAGGTTGCTCATTTTATTAACAATTTGGGTAAGGATGTGGCTTTTGATGATGAAAGATGTTATCTGTCGAAATTGTTCAATGATGTTCATCAGTATTACAGCAACAGTTGGCATGTTCAATGGGCAAGCTTCAAACCTTATACACTGTTTTTAGTTATTATCATTCTTGAGCAACACAGAAAACTCGGAGTTAATTCCCAAACTCGTTTCTTCATGGATAACAATCCAGTTCAAGAAGAACACAACCATGTCACCCCCACCTGGGAAATGAGCAGTGATCGCTTAGCTTCCATGTACCAGAAGATAGCAGACCCTCCACGACTCCTCAGCAACGCCGCCGGCAAAGCCTCCTGCTGCATCTTCCGAGTCCCGCAGAGCCTCCTCGAGATAAACGGCAAGGCTTACCAGCCCCACATCGTCTCCATCGGCCCCTACCACCGCGGCGAGCCCCGCCTCAGAATGATCGAGGAGCACAAGTGGCGCTACCTGGGCTCTCTGCTTTCAAGAACAGAGCCCAAAGGGTTGACTCTACAGCACTACTTGAAGTCCATAAAGCCATTGGAAGCTAGAGCCAGGGAGTGTTACTCCGAGACCATCCATCTCAGCACTGATGAGTTCCTAGAAATGATGGTTGTTGATGGTTGCTTCTTAATTGAGTTGTTTCGAAAAGTTGGGCGTGTGGTTCGGTTTGAGCGTGATGATCCACTCATTAATATGTTTTGGATACTACCGTTTATGGTCAGGGATTTTCTTCGGCTTGAGAACCAAATGCCCTACTTTATTCTTGAGCACTTGTATGATCTGATAAACAAGGCCGAAGATCGCAAAGACCCTGTGAAATCCTTGTCCTTGCTTGCTTTGCAATTCTTCAACATCCATATGATGAGGCCTGACCCTGTCATAGAAAAGCTCCATAGTCTTACAGGTATGCATTTGCTTGACTTGTTGCGGTCAAGTGTGATACCAGCGGGTTATGCAGAGCCACAAAGAAGAAACAGTACACCAACGCACATAATACATCCTGTGTCTAAGCTTCGTCACGCTGGTATCAAGCTCAATGTTAAGGAATTCGAAAGCTTCTTGGTGGTCAAATTCAAGCGTGGAGCAATTGAAATGCCTACCATCACAATCGACGATTTCATGTGCGCCTTCTTTTTGAACTGCGTGGCCTATGAGCAGTGCCACAAGTCATGCTCCAAACACATCACCACTTATGCCACATTGCTCGATTGCCTAGTGAACAGTTACAAGGATGTCGAGTATTTGTGTGACAGAAACATAATTGAGAATTGCTATGGGAACGATGGGGAAATTGCTTGTTTCATTAACAATATGGGGAAGGATGTGGCTTTTGATTATGATAGGTGTTATTTGTCGAAATTGTTCAATGATGTTCATCAGTATTACAGCAATAGTTGGCATGTTCAATGGGCTAGCTTCAAGTATAGATACTTTGACACACCGTGGTCGTTTATTTCAGCCTTGGCTGCTTTGATTTTGCTAATACTCACAGTGCTCCAGACCTTATACTCTGCTTTAAGGGGGAATCAACTTCCTAGACCCACAAGACCGATAAGCAGCTACGGCATGGCTCCAATGTCTTCATTGCCTTCATCTTTTCCTCATCCCACAAGACCAGTTAGCATAGACCAATACAATGCTCAACAAGTTGTTTATGATGAAACTTTTGTCCATGGGGCACGACCAACTGAAGAGGAAGATAGGGAAGGTCTTGATGGATTGCTTGGGTTCATGTCAGAGCTTATTGAAAAAGTTCCTGCAAAACTAGAACACAAATTACTTGATAAATATATGGATCATAGAGAAAATGAAGGTCCTGTCATTGTGGAAAGGGGTACTACTACTACTACTAGTCGCGGTCTTCAAGGAACTGGGGAATCATCACCAAAGCTTGAGCGCTTCAAGATCCGAACTGTGGATTATGGGGATGATGTCAAGGAGGAAGAGAACGTGAAGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

1027

Amino Acids

119.37

Weight (kDa)

6.44

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	49 - 411	3e-114	Plant protein of unknown function
DUF247	PF03140	486 - 869	8.5e-119	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36430
fragaria_vesca	FvH4_6g18050 FvH4_6g18060 FvH4_6g18063
malus_domestica	MD12G1019200.v1.1 MD14G1017100.v1.1
prunus_persica	Prupe.7G116000_v2.0.a1 Prupe.7G116100_v2.0.a1 Prupe.7G116200_v2.0.a1
pyrus_communis	pycom12g01590 pycom12g01610 pycom14g01490
rosa_chinensis	RchiOBHm_Chr3g0472321 RchiOBHm_Chr3g0472331 RchiOBHm_Chr3g0472341
rosa_laevigata	RLG00000024087 RLG00000024112
rosa_multiflora	Rmu_co8308659.1_g000001 Rmu_co8344587.1_g000001 Rmu_co8459455.1_g000001 Rmu_sc0000090.1_g000030 Rmu_sc0000627.1_g000002 Rmu_sc0002532.1_g000004 Rmu_sc0026961.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409010 Rroxscaffold_6G00409020 Rroxscaffold_6G00409030 Rroxscaffold_6G00409070 Rroxscaffold_6G00409360
rosa_rugosa	Rorug03G0123900 Rorug03G0124000 Rorug03G0124100 Rorug03G0124200
rosa_samantha	Rh3AG176300 Rh3AG176500 Rh3BG202000 Rh3BG202100 Rh3BG202200 Rh3DG173000 Rh3DG173200 Rh3DG173300
rosa_wichuraiana	Rw3G016490 Rw3G016500 Rw3G016740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	738
AccII	CGCG	5 cut(s)	228, 483, 828, 1539, 2976
AclI	AACGTT	1 cut(s)	1010
AclWI	GGATC	4 cut(s)	482, 1793, 2922, 3019
AcoI	YGGCCR	2 cut(s)	229, 460
AcsI	RAATTY	3 cut(s)	555, 2165, 2189
AcuI	CTGAAG	2 cut(s)	644, 2829
AdeI	CACNNNGTG	1 cut(s)	2562
AfaI	GTAC	6 cut(s)	83, 191, 787, 1394, 2098, 2956
AfeI	AGCGCT	1 cut(s)	3017
AfiI	CCNNNNNNNGG	3 cut(s)	1359, 1360, 3034
AflIII	ACRYGT	1 cut(s)	760
AhlI	ACTAGT	1 cut(s)	2969
AjnI	CCWGG	5 cut(s)	273, 769, 1358, 1584, 1670
Alw21I	GWGCWC	5 cut(s)	261, 938, 1572, 1890, 2616
Alw26I	GTCTC	3 cut(s)	211, 1522, 1682
AlwI	GGATC	4 cut(s)	482, 1793, 2922, 3019
Ama87I	CYCGRG	2 cut(s)	170, 1481
Aor51HI	AGCGCT	1 cut(s)	3017
AoxI	GGCC	7 cut(s)	229, 460, 674, 1525, 1911, 1985, 2265
ApeKI	GCWGC	5 cut(s)	141, 697, 1452, 2585, 2676
ApoI	RAATTY	3 cut(s)	555, 2165, 2189
AseI	ATTAAT	2 cut(s)	498, 1809
Asp700I	GAANNNNTTC	4 cut(s)	1082, 1172, 2480, 2871
AspLEI	GCGC	5 cut(s)	483, 830, 1581, 2246, 3018
AspS9I	GGNCC	3 cut(s)	215, 1526, 2933
AsuHPI	GGTGA	6 cut(s)	31, 230, 988, 1342, 2296, 2994
AsuII	TTCGAA	3 cut(s)	451, 1762, 2169
AsuNHI	GCTAGC	1 cut(s)	2531
AvaI	CYCGRG	2 cut(s)	170, 1481
AvaII	GGWCC	2 cut(s)	215, 2933
BaeGI	GKGCMC	1 cut(s)	2800
BaeI	ACNNNNGTAYC	6 cut(s)	503, 536, 1814, 1847, 2128, 2161
BanII	GRGCYC	6 cut(s)	281, 303, 938, 1548, 1592, 1614
BarI	GAAGNNNNNNTAC	2 cut(s)	2080, 2112
BbsI	GAAGAC	2 cut(s)	2691, 2972
Bbv12I	GWGCWC	5 cut(s)	261, 938, 1572, 1890, 2616
BbvCI	CCTCAGC	2 cut(s)	113, 1424
BbvI	GCAGC	5 cut(s)	128, 684, 1439, 2572, 2688
BceAI	ACGGC	4 cut(s)	196, 447, 1507, 2698
BcgI	CGANNNNNNTGC	2 cut(s)	671, 705
BciT130I	CCWGG	5 cut(s)	275, 771, 1360, 1586, 1672
BciVI	GTATCC	2 cut(s)	504, 1815
BcoDI	GTCTC	3 cut(s)	211, 1522, 1682
BcuI	ACTAGT	1 cut(s)	2969
BfaI	CTAG	9 cut(s)	71, 1025, 1665, 1718, 2333, 2532, 2655, 2885, 2970
BfmI	CTRYAG	1 cut(s)	1628
BfoI	RGCGCY	2 cut(s)	1582, 3019
BfuI	GTATCC	2 cut(s)	504, 1815
BisI	GCNGC	9 cut(s)	123, 142, 229, 698, 1434, 1453, 1540, 2586, 2677
BlpI	GCTNAGC	1 cut(s)	1381
BlsI	GCNGC	9 cut(s)	124, 143, 230, 699, 1435, 1454, 1541, 2587, 2678
Bme1390I	CCNGG	5 cut(s)	275, 771, 1360, 1586, 1672
Bme18I	GGWCC	2 cut(s)	215, 2933
BmeT110I	CYCGRG	2 cut(s)	170, 1481
BmgT120I	GGNCC	3 cut(s)	215, 1526, 2933
BmiI	GGNNCC	3 cut(s)	217, 1528, 2691
BmrFI	CCNGG	5 cut(s)	275, 771, 1360, 1586, 1672
BmrI	ACTGGG	1 cut(s)	3000
BmsI	GCATC	2 cut(s)	153, 1464
BmtI	GCTAGC	1 cut(s)	2535
BmuI	ACTGGG	1 cut(s)	3000
BpiI	GAAGAC	2 cut(s)	2691, 2972
BplI	GAGNNNNNCTC	4 cut(s)	356, 388, 1667, 1699
BpmI	CTGGAG	2 cut(s)	302, 2600
Bpu10I	CCTNAGC	2 cut(s)	113, 1424
Bpu1102I	GCTNAGC	1 cut(s)	1381
Bpu14I	TTCGAA	3 cut(s)	451, 1762, 2169
BpuEI	CTTGAG	7 cut(s)	566, 593, 724, 1286, 1877, 1904, 3032
BsaBI	GATNNNNATC	3 cut(s)	1185, 1320, 2493
BsaI	GGTCTC	1 cut(s)	1682
BsaJI	CCNNGG	9 cut(s)	226, 274, 1359, 1537, 1585, 1671, 2561, 2580, 2791
BsaXI	ACNNNNNCTCC	8 cut(s)	191, 221, 248, 278, 1502, 1532, 1559, 1589
Bsc4I	CCNNNNNNNGG	3 cut(s)	1359, 1360, 3034
Bse118I	RCCGGY	2 cut(s)	125, 1436
Bse1I	ACTGG	4 cut(s)	14, 1325, 2735, 2995
Bse3DI	GCAATG	5 cut(s)	124, 687, 974, 2318, 2702
Bse8I	GATNNNNATC	3 cut(s)	1185, 1320, 2493
BseBI	CCWGG	5 cut(s)	275, 771, 1360, 1586, 1672
BseDI	CCNNGG	9 cut(s)	226, 274, 1359, 1537, 1585, 1671, 2561, 2580, 2791
BseGI	GGATG	9 cut(s)	1048, 1138, 1692, 1971, 2116, 2356, 2446, 2722, 3052
BseJI	GATNNNNATC	3 cut(s)	1185, 1320, 2493
BseLI	CCNNNNNNNGG	3 cut(s)	1359, 1360, 3034
BseMI	GCAATG	5 cut(s)	124, 687, 974, 2318, 2702
BseMII	CTCAG	6 cut(s)	127, 256, 403, 1438, 1567, 1714
BseNI	ACTGG	4 cut(s)	14, 1325, 2735, 2995
BseRI	GAGGAG	8 cut(s)	101, 158, 269, 413, 1112, 1412, 1469, 1580
BseSI	GKGCMC	1 cut(s)	2800
BseXI	GCAGC	5 cut(s)	128, 684, 1439, 2572, 2688
Bsh1236I	CGCG	5 cut(s)	228, 483, 828, 1539, 2976
BshFI	GGCC	7 cut(s)	231, 462, 676, 1527, 1913, 1987, 2267
BsiHKAI	GWGCWC	5 cut(s)	261, 938, 1572, 1890, 2616
BsiHKCI	CYCGRG	2 cut(s)	170, 1481
BsiSI	CCGG	3 cut(s)	126, 677, 1437
BslFI	GGGAC	3 cut(s)	140, 201, 1451
BslI	CCNNNNNNNGG	3 cut(s)	1359, 1360, 3034
BsmAI	GTCTC	3 cut(s)	211, 1522, 1682
BsmBI	CGTCTC	2 cut(s)	211, 1522
BsmFI	GGGAC	3 cut(s)	140, 201, 1451
BsnI	GGCC	7 cut(s)	231, 462, 676, 1527, 1913, 1987, 2267
Bso31I	GGTCTC	1 cut(s)	1682
BsoBI	CYCGRG	2 cut(s)	170, 1481
Bsp119I	TTCGAA	3 cut(s)	451, 1762, 2169
Bsp1407I	TGTACA	1 cut(s)	81
Bsp1720I	GCTNAGC	1 cut(s)	1381
Bsp19I	CCATGG	1 cut(s)	2791
BspANI	GGCC	7 cut(s)	231, 462, 676, 1527, 1913, 1987, 2267
BspCNI	CTCAG	6 cut(s)	126, 255, 402, 1437, 1566, 1713
BspFNI	CGCG	5 cut(s)	228, 483, 828, 1539, 2976
BspHI	TCATGA	1 cut(s)	930
BspLI	GGNNCC	3 cut(s)	217, 1528, 2691
BspOI	GCTAGC	1 cut(s)	2535
BspPI	GGATC	4 cut(s)	482, 1793, 2922, 3019
BspT104I	TTCGAA	3 cut(s)	451, 1762, 2169
BspTNI	GGTCTC	1 cut(s)	1682
BsrBI	CCGCTC	1 cut(s)	738
BsrDI	GCAATG	5 cut(s)	124, 687, 974, 2318, 2702
BsrFI	RCCGGY	2 cut(s)	125, 1436
BsrGI	TGTACA	1 cut(s)	81
BsrI	ACTGG	4 cut(s)	14, 1325, 2735, 2995
BssAI	RCCGGY	2 cut(s)	125, 1436
BssECI	CCNNGG	9 cut(s)	226, 274, 1359, 1537, 1585, 1671, 2561, 2580, 2791
BssT1I	CCWWGG	2 cut(s)	2580, 2791
Bst2UI	CCWGG	5 cut(s)	275, 771, 1360, 1586, 1672
Bst4CI	ACNGT	9 cut(s)	953, 1205, 1245, 1830, 2096, 2342, 2562, 2611, 3034
Bst6I	CTCTTC	2 cut(s)	2805, 3057
BstAUI	TGTACA	1 cut(s)	81
BstBI	TTCGAA	3 cut(s)	451, 1762, 2169
BstC8I	GCNNGC	8 cut(s)	127, 233, 642, 1225, 1438, 1544, 1953, 2533
BstDEI	CTNAG	8 cut(s)	113, 242, 389, 1381, 1424, 1553, 1700, 2127
BstDSI	CCRYGG	4 cut(s)	226, 1537, 2561, 2791
BstF5I	GGATG	9 cut(s)	1048, 1138, 1692, 1971, 2116, 2356, 2446, 2722, 3052
BstFNI	CGCG	5 cut(s)	228, 483, 828, 1539, 2976
BstH2I	RGCGCY	2 cut(s)	1582, 3019
BstHHI	GCGC	5 cut(s)	483, 830, 1581, 2246, 3018
BstMAI	GTCTC	3 cut(s)	211, 1522, 1682
BstNI	CCWGG	5 cut(s)	275, 771, 1360, 1586, 1672
BstNSI	RCATGY	3 cut(s)	764, 1214, 2522
BstSCI	CCNGG	5 cut(s)	273, 769, 1358, 1584, 1670
BstSFI	CTRYAG	1 cut(s)	1628
BstSLI	GKGCMC	1 cut(s)	2800
BstUI	CGCG	5 cut(s)	228, 483, 828, 1539, 2976
BstV1I	GCAGC	5 cut(s)	128, 684, 1439, 2572, 2688
BstV2I	GAAGAC	2 cut(s)	2691, 2972
BstX2I	RGATCY	1 cut(s)	3024
BstYI	RGATCY	1 cut(s)	3024
BsuI	GTATCC	2 cut(s)	504, 1815
BsuRI	GGCC	7 cut(s)	231, 462, 676, 1527, 1913, 1987, 2267
BtgI	CCRYGG	4 cut(s)	226, 1537, 2561, 2791
BtgZI	GCGATG	1 cut(s)	498
BtsCI	GGATG	9 cut(s)	1048, 1138, 1692, 1971, 2116, 2356, 2446, 2722, 3052
BtsI	GCAGTG	2 cut(s)	1378, 2282
BtsIMutI	CAGTG	5 cut(s)	1241, 1378, 1704, 2282, 2616
Cac8I	GCNNGC	8 cut(s)	127, 233, 642, 1225, 1438, 1544, 1953, 2533
CciI	TCATGA	1 cut(s)	930
CfoI	GCGC	5 cut(s)	483, 830, 1581, 2246, 3018
Cfr10I	RCCGGY	2 cut(s)	125, 1436
Cfr13I	GGNCC	3 cut(s)	215, 1526, 2933
Cfr42I	CCGCGG	2 cut(s)	229, 1540
CseI	GACGC	1 cut(s)	783
Csp6I	GTAC	6 cut(s)	82, 190, 786, 1393, 2097, 2955
CviQI	GTAC	6 cut(s)	82, 190, 786, 1393, 2097, 2955
DdeI	CTNAG	8 cut(s)	113, 242, 389, 1381, 1424, 1553, 1700, 2127
DraIII	CACNNNGTG	1 cut(s)	2562
EaeI	YGGCCR	2 cut(s)	229, 460
Eam1104I	CTCTTC	2 cut(s)	2805, 3057
EarI	CTCTTC	2 cut(s)	2805, 3057
Ecl136II	GAGCTC	1 cut(s)	936
Eco130I	CCWWGG	2 cut(s)	2580, 2791
Eco147I	AGGCCT	1 cut(s)	1987
Eco24I	GRGCYC	6 cut(s)	281, 303, 938, 1548, 1592, 1614
Eco31I	GGTCTC	1 cut(s)	1682
Eco47I	GGWCC	2 cut(s)	215, 2933
Eco47III	AGCGCT	1 cut(s)	3017
Eco53kI	GAGCTC	1 cut(s)	936
Eco57I	CTGAAG	2 cut(s)	644, 2829
Eco88I	CYCGRG	2 cut(s)	170, 1481
EcoICRI	GAGCTC	1 cut(s)	936
EcoO109I	RGGNCCY	1 cut(s)	2933
EcoRI	GAATTC	1 cut(s)	2165
EcoRII	CCWGG	5 cut(s)	273, 769, 1358, 1584, 1670
EcoT14I	CCWWGG	2 cut(s)	2580, 2791
EcoT22I	ATGCAT	2 cut(s)	6, 2031
EcoT38I	GRGCYC	6 cut(s)	281, 303, 938, 1548, 1592, 1614
ErhI	CCWWGG	2 cut(s)	2580, 2791
Esp3I	CGTCTC	2 cut(s)	211, 1522
FaqI	GGGAC	3 cut(s)	140, 201, 1451
FauI	CCCGC	4 cut(s)	165, 1476, 1556, 2059
FauNDI	CATATG	2 cut(s)	666, 1977
Fnu4HI	GCNGC	9 cut(s)	123, 142, 229, 698, 1434, 1453, 1540, 2586, 2677
FokI	GGATG	9 cut(s)	1055, 1145, 1679, 1958, 2103, 2363, 2453, 2709, 3059
FriOI	GRGCYC	6 cut(s)	281, 303, 938, 1548, 1592, 1614
Fsp4HI	GCNGC	9 cut(s)	123, 142, 229, 698, 1434, 1453, 1540, 2586, 2677
FspBI	CTAG	9 cut(s)	71, 1025, 1665, 1718, 2333, 2532, 2655, 2885, 2970
GlaI	GCGC	5 cut(s)	482, 829, 1580, 2245, 3017
GluI	GCNGC	9 cut(s)	123, 142, 229, 698, 1434, 1453, 1540, 2586, 2677
GsuI	CTGGAG	2 cut(s)	302, 2600
HaeII	RGCGCY	2 cut(s)	1582, 3019
HaeIII	GGCC	7 cut(s)	231, 462, 676, 1527, 1913, 1987, 2267
HapII	CCGG	3 cut(s)	126, 677, 1437
HgaI	GACGC	1 cut(s)	783
HhaI	GCGC	5 cut(s)	483, 830, 1581, 2246, 3018
Hin6I	GCGC	5 cut(s)	481, 828, 1579, 2244, 3016
HinP1I	GCGC	5 cut(s)	481, 828, 1579, 2244, 3016
HincII	GTYRAC	2 cut(s)	312, 1623
HindII	GTYRAC	2 cut(s)	312, 1623
HindIII	AAGCTT	6 cut(s)	818, 865, 1225, 2129, 2173, 3008
HinfI	GANTC	9 cut(s)	108, 134, 153, 313, 1419, 1464, 1624, 2644, 2996
HpaII	CCGG	3 cut(s)	126, 677, 1437
HphI	GGTGA	6 cut(s)	31, 230, 988, 1342, 2296, 2994
Hpy166II	GTNNAC	4 cut(s)	312, 1623, 2099, 2338
Hpy8I	GTNNAC	4 cut(s)	312, 1623, 2099, 2338
Hpy99I	CGWCG	3 cut(s)	410, 828, 2234
HpyAV	CCTTC	6 cut(s)	229, 2257, 2431, 2718, 2819, 2924
HpyCH4III	ACNGT	9 cut(s)	953, 1205, 1245, 1830, 2096, 2342, 2562, 2611, 3034
HpyCH4IV	ACGT	2 cut(s)	1010, 3069
HpyF3I	CTNAG	8 cut(s)	113, 242, 389, 1381, 1424, 1553, 1700, 2127
HpySE526I	ACGT	2 cut(s)	1010, 3069
HspAI	GCGC	5 cut(s)	481, 828, 1579, 2244, 3016
KroI	GCCGGC	2 cut(s)	125, 1436
KroNI	GCCGGC	2 cut(s)	127, 1438
KspI	CCGCGG	2 cut(s)	229, 1540
LmnI	GCTCC	8 cut(s)	256, 989, 1567, 2013, 2201, 2297, 2619, 2695
Lsp1109I	GCAGC	5 cut(s)	128, 684, 1439, 2572, 2688
LweI	GCATC	2 cut(s)	153, 1464
MaeI	CTAG	9 cut(s)	71, 1025, 1665, 1718, 2333, 2532, 2655, 2885, 2970
MaeII	ACGT	2 cut(s)	1010, 3069
MaeIII	GTNAC	7 cut(s)	37, 269, 1348, 1679, 2135, 2342, 2366
MbiI	CCGCTC	1 cut(s)	738
MfeI	CAATTG	1 cut(s)	2205
MflI	RGATCY	1 cut(s)	3024
MlyI	GAGTC	7 cut(s)	102, 128, 162, 307, 1413, 1473, 1618
Mph1103I	ATGCAT	2 cut(s)	6, 2031
MroNI	GCCGGC	2 cut(s)	125, 1436
MroXI	GAANNNNTTC	4 cut(s)	1082, 1172, 2480, 2871
MslI	CAYNNNNRTG	7 cut(s)	33, 500, 582, 1344, 1811, 1893, 1976
MspA1I	CMGCKG	3 cut(s)	228, 1539, 2066
MspI	CCGG	3 cut(s)	126, 677, 1437
MspR9I	CCNGG	5 cut(s)	275, 771, 1360, 1586, 1672
MunI	CAATTG	1 cut(s)	2205
MvaI	CCWGG	5 cut(s)	275, 771, 1360, 1586, 1672
MvnI	CGCG	5 cut(s)	228, 483, 828, 1539, 2976
NaeI	GCCGGC	2 cut(s)	127, 1438
NcoI	CCATGG	1 cut(s)	2791
NdeI	CATATG	2 cut(s)	666, 1977
NgoMIV	GCCGGC	2 cut(s)	125, 1436
NheI	GCTAGC	1 cut(s)	2531
NlaIV	GGNNCC	3 cut(s)	217, 1528, 2691
NmuCI	GTSAC	4 cut(s)	37, 1348, 2135, 2366
NsiI	ATGCAT	2 cut(s)	6, 2031
NspI	RCATGY	3 cut(s)	764, 1214, 2522
NspV	TTCGAA	3 cut(s)	451, 1762, 2169
PaeR7I	CTCGAG	2 cut(s)	170, 1481
PagI	TCATGA	1 cut(s)	930
PceI	AGGCCT	1 cut(s)	1987
PciI	ACATGT	1 cut(s)	760
PcsI	WCGNNNNNNNCGW	1 cut(s)	1789
PdiI	GCCGGC	2 cut(s)	127, 1438
PdmI	GAANNNNTTC	4 cut(s)	1082, 1172, 2480, 2871
PfeI	GAWTC	2 cut(s)	2644, 2996
PflFI	GACNNNGTC	2 cut(s)	683, 1994
PkrI	GCNGC	9 cut(s)	124, 143, 230, 699, 1435, 1454, 1541, 2587, 2678
PleI	GAGTC	7 cut(s)	102, 128, 161, 307, 1413, 1472, 1618
PpsI	GAGTC	7 cut(s)	102, 128, 161, 307, 1413, 1472, 1618
PpuMI	RGGWCCY	1 cut(s)	2933
PscI	ACATGT	1 cut(s)	760
PshBI	ATTAAT	2 cut(s)	498, 1809
Psp124BI	GAGCTC	1 cut(s)	938
Psp1406I	AACGTT	1 cut(s)	1010
Psp5II	RGGWCCY	1 cut(s)	2933
Psp6I	CCWGG	5 cut(s)	273, 769, 1358, 1584, 1670
PspGI	CCWGG	5 cut(s)	273, 769, 1358, 1584, 1670
PspN4I	GGNNCC	3 cut(s)	217, 1528, 2691
PspPI	GGNCC	3 cut(s)	215, 1526, 2933
PspPPI	RGGWCCY	1 cut(s)	2933
PsrI	GAACNNNNNNTAC	2 cut(s)	2880, 2912
PsuI	RGATCY	1 cut(s)	3024
PsyI	GACNNNGTC	2 cut(s)	683, 1994
RsaI	GTAC	6 cut(s)	83, 191, 787, 1394, 2098, 2956
RsaNI	GTAC	6 cut(s)	82, 190, 786, 1393, 2097, 2955
RseI	CAYNNNNRTG	7 cut(s)	33, 500, 582, 1344, 1811, 1893, 1976
SacI	GAGCTC	1 cut(s)	938
SacII	CCGCGG	2 cut(s)	229, 1540
SatI	GCNGC	9 cut(s)	123, 142, 229, 698, 1434, 1453, 1540, 2586, 2677
Sau96I	GGNCC	3 cut(s)	215, 1526, 2933
SchI	GAGTC	7 cut(s)	102, 128, 162, 307, 1413, 1473, 1618
ScrFI	CCNGG	5 cut(s)	275, 771, 1360, 1586, 1672
SfaNI	GCATC	2 cut(s)	153, 1464
SfcI	CTRYAG	1 cut(s)	1628
Sfr274I	CTCGAG	2 cut(s)	170, 1481
Sfr303I	CCGCGG	2 cut(s)	229, 1540
SfuI	TTCGAA	3 cut(s)	451, 1762, 2169
SgrBI	CCGCGG	2 cut(s)	229, 1540
SinI	GGWCC	2 cut(s)	215, 2933
SlaI	CTCGAG	2 cut(s)	170, 1481
SmiMI	CAYNNNNRTG	7 cut(s)	33, 500, 582, 1344, 1811, 1893, 1976
SmlI	CTYRAG	9 cut(s)	170, 545, 572, 739, 1265, 1481, 1856, 1883, 3011
SmoI	CTYRAG	9 cut(s)	170, 545, 572, 739, 1265, 1481, 1856, 1883, 3011
SpeI	ACTAGT	1 cut(s)	2969
SseBI	AGGCCT	1 cut(s)	1987
SspMI	CTAG	9 cut(s)	71, 1025, 1665, 1718, 2333, 2532, 2655, 2885, 2970
SstI	GAGCTC	1 cut(s)	938
StuI	AGGCCT	1 cut(s)	1987
StyD4I	CCNGG	5 cut(s)	273, 769, 1358, 1584, 1670
StyI	CCWWGG	2 cut(s)	2580, 2791
TaaI	ACNGT	9 cut(s)	953, 1205, 1245, 1830, 2096, 2342, 2562, 2611, 3034
TaiI	ACGT	2 cut(s)	1013, 3072
TaqII	GACCGA	2 cut(s)	203, 2683
TatI	WGTACW	2 cut(s)	81, 2096
TauI	GCSGC	4 cut(s)	125, 231, 1436, 1542
TfiI	GAWTC	2 cut(s)	2644, 2996
TscAI	CASTG	5 cut(s)	1248, 1378, 1711, 2282, 2616
TseFI	GTSAC	4 cut(s)	37, 1348, 2135, 2366
TseI	GCWGC	5 cut(s)	141, 697, 1452, 2585, 2676
Tsp45I	GTSAC	4 cut(s)	37, 1348, 2135, 2366
TspGWI	ACGGA	1 cut(s)	507
TspRI	CASTG	5 cut(s)	1248, 1378, 1711, 2282, 2616
Tth111I	GACNNNGTC	2 cut(s)	683, 1994
VpaK11BI	GGWCC	2 cut(s)	215, 2933
VspI	ATTAAT	2 cut(s)	498, 1809
XapI	RAATTY	3 cut(s)	555, 2165, 2189
XceI	RCATGY	3 cut(s)	764, 1214, 2522
XcmI	CCANNNNNNNNNTGG	2 cut(s)	343, 1654
XhoI	CTCGAG	2 cut(s)	170, 1481
XmnI	GAANNNNTTC	4 cut(s)	1082, 1172, 2480, 2871
XspI	CTAG	9 cut(s)	71, 1025, 1665, 1718, 2333, 2532, 2655, 2885, 2970
Zsp2I	ATGCAT	2 cut(s)	6, 2031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.