Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000090.1

Orthogroup ID

OG0002063

Physical Location & Seq

Genomic Coordinates Forward (+)

103024 .. 104494

Gene Structure 1471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000090.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

atggataccaatccagttcaagaagaacacaaccatgtcacccccatctccggaatgaacaatgatcgcctagcttccatgtaccagaagatcgcagaccctccacaactcctcagcaacgctgccggcaaagcctcctgttgcatcttccgagtcccgcagaaccttgtcgagataaacggcaagtcgtaccagccccacatcgtctccatcggtcccttccaccgcggcgagccccacctcagaatgatcgaggagcacaagtggcgctaccttggctctctgctttcaagaacagagcccaaagggttgactctccagcactacttgaagtccatagagccaatggaagctagagccagagagtgttacgctgaaacaatcgaccttagcagtgatgagttcgtcgaaatgatggttgttgatggttgcttcttaatcgagatgtttcgaaaatatggccgtgtggttcggtttgagagcgatgatccactcatcaatatgttctggatacttccgtttatggttagagattttcttcgtcttgagaaccaaatcccctactttatacttgagcatttgtatgatctaataaccaagtcagaagatcgtcaagactctgtgaagtctttgtccttgcttgctttaaacttcttcaacaaccatatggacaggccgaaagaagtcattgcaaagctgcataatcttacaggtacgcatttgcttgacttactccggtcaagtgtgataccagctgaccttgttgaaccaggacgcaggaattacacccccattatacgttgtgtttcaacgcttcgtcgcgctggaatcaagctcaatcctactagagaatacgaaagcttcttggagatcaagttcaaccgtggagttatcgaaatgcctccaatcaccatagacgatttcatgagctcgttcttgttaaactgtgtggcctatgagcaatgccacaagtcatgctctaaacacatcaccacttacacaatctggctggattgcctagtgaatacttacaaggatgtcgagtatttggctgacataaacataatcaacaattggttcggaaacgatgaagaggttgctcattttattaacaatttggggaaggatgtggcttttgatattgagagatgtcatctgtcgaaattgttcaatgatgtacatcattattacggaaatagttggcatgttcaatgggcaagcttcaagtacacttacttttctgatccatggtcgtttctttcggcttttgctgtgttgattttcttttttaccttgctgcagaccttatacactgttttaagttattatcattcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

445

Amino Acids

51.99

Weight (kDa)

5.95

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36430
fragaria_vesca	FvH4_6g18050 FvH4_6g18060 FvH4_6g18063
malus_domestica	MD12G1019200.v1.1 MD14G1017100.v1.1
prunus_persica	Prupe.7G116000_v2.0.a1 Prupe.7G116100_v2.0.a1 Prupe.7G116200_v2.0.a1
pyrus_communis	pycom12g01590 pycom12g01610 pycom14g01490
rosa_chinensis	RchiOBHm_Chr3g0472321 RchiOBHm_Chr3g0472331 RchiOBHm_Chr3g0472341
rosa_laevigata	RLG00000024087 RLG00000024112
rosa_multiflora	Rmu_co8308659.1_g000001 Rmu_co8344587.1_g000001 Rmu_co8459455.1_g000001 Rmu_sc0000090.1_g000030 Rmu_sc0000627.1_g000002 Rmu_sc0002532.1_g000004 Rmu_sc0026961.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409010 Rroxscaffold_6G00409020 Rroxscaffold_6G00409030 Rroxscaffold_6G00409070 Rroxscaffold_6G00409360
rosa_rugosa	Rorug03G0123900 Rorug03G0124000 Rorug03G0124100 Rorug03G0124200
rosa_samantha	Rh3AG176300 Rh3AG176500 Rh3BG202000 Rh3BG202100 Rh3BG202200 Rh3DG173000 Rh3DG173200 Rh3DG173300
rosa_wichuraiana	Rw3G016490 Rw3G016500 Rw3G016740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	228, 822
AccIII	TCCGGA	1 cut(s)	50
AciI	CCGC	3 cut(s)	158, 226, 228
AclWI	GGATC	2 cut(s)	482, 1238
AcoI	YGGCCR	1 cut(s)	460
AfaI	GTAC	5 cut(s)	83, 191, 715, 1179, 1229
AfiI	CCNNNNNNNGG	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	769
AloI	GAACNNNNNNTCC	2 cut(s)	860, 892
AluBI	AGCT	8 cut(s)	74, 353, 697, 755, 835, 861, 930, 1221
AluI	AGCT	8 cut(s)	74, 353, 697, 755, 835, 861, 930, 1221
Alw21I	GWGCWC	2 cut(s)	261, 932
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	2 cut(s)	482, 1238
Aor13HI	TCCGGA	1 cut(s)	50
AoxI	GGCC	3 cut(s)	460, 674, 951
ApeKI	GCWGC	3 cut(s)	122, 697, 1297
Asp700I	GAANNNNTTC	1 cut(s)	1166
AspLEI	GCGC	2 cut(s)	270, 824
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	3 cut(s)	31, 901, 982
AsuII	TTCGAA	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	215
BaeI	ACNNNNGTAYC	2 cut(s)	503, 536
BanII	GRGCYC	3 cut(s)	237, 303, 932
Bbv12I	GWGCWC	2 cut(s)	261, 932
BbvCI	CCTCAGC	1 cut(s)	113
BbvI	GCAGC	3 cut(s)	109, 684, 1284
BccI	CCATC	4 cut(s)	53, 218, 409, 419
BceAI	ACGGC	2 cut(s)	196, 447
BciT130I	CCWGG	1 cut(s)	771
BciVI	GTATCC	1 cut(s)	504
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	4 cut(s)	71, 354, 846, 1019
BfmI	CTRYAG	1 cut(s)	1298
BfoI	RGCGCY	1 cut(s)	271
BfuI	GTATCC	1 cut(s)	504
BisI	GCNGC	4 cut(s)	123, 229, 698, 1298
BlsI	GCNGC	4 cut(s)	124, 230, 699, 1299
Bme1390I	CCNGG	1 cut(s)	771
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	771
BmsI	GCATC	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	302
Bpu10I	CCTNAGC	2 cut(s)	113, 389
Bpu14I	TTCGAA	1 cut(s)	451
BpuEI	CTTGAG	2 cut(s)	566, 593
BsaBI	GATNNNNATC	2 cut(s)	9, 1179
BsaJI	CCNNGG	4 cut(s)	226, 274, 883, 1247
BsaWI	WCCGGW	2 cut(s)	50, 735
BsaXI	ACNNNNNCTCC	6 cut(s)	191, 221, 248, 278, 860, 890
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	14
Bse3DI	GCAATG	2 cut(s)	687, 968
Bse8I	GATNNNNATC	2 cut(s)	9, 1179
BseAI	TCCGGA	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	771
BseDI	CCNNGG	4 cut(s)	226, 274, 883, 1247
BseGI	GGATG	2 cut(s)	1042, 1132
BseJI	GATNNNNATC	2 cut(s)	9, 1179
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	2 cut(s)	687, 968
BseMII	CTCAG	2 cut(s)	127, 256
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	2 cut(s)	101, 269
BseXI	GCAGC	3 cut(s)	109, 684, 1284
Bsh1236I	CGCG	2 cut(s)	228, 822
BshFI	GGCC	3 cut(s)	462, 676, 953
BsiHKAI	GWGCWC	2 cut(s)	261, 932
BsiSI	CCGG	3 cut(s)	51, 126, 736
BslFI	GGGAC	2 cut(s)	140, 201
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	211
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	2 cut(s)	140, 201
BsnI	GGCC	3 cut(s)	462, 676, 953
Bsp119I	TTCGAA	1 cut(s)	451
Bsp1286I	GDGCHC	4 cut(s)	237, 261, 303, 932
Bsp13I	TCCGGA	1 cut(s)	50
Bsp1407I	TGTACA	1 cut(s)	1177
Bsp143I	GATC	8 cut(s)	64, 90, 249, 487, 586, 607, 870, 1243
Bsp19I	CCATGG	1 cut(s)	1247
BspACI	CCGC	3 cut(s)	158, 226, 228
BspANI	GGCC	3 cut(s)	462, 676, 953
BspCNI	CTCAG	2 cut(s)	126, 255
BspEI	TCCGGA	1 cut(s)	50
BspFNI	CGCG	2 cut(s)	228, 822
BspHI	TCATGA	1 cut(s)	924
BspLI	GGNNCC	1 cut(s)	217
BspMAI	CTGCAG	1 cut(s)	1302
BspPI	GGATC	2 cut(s)	482, 1238
BspT104I	TTCGAA	1 cut(s)	451
BsrDI	GCAATG	2 cut(s)	687, 968
BsrFI	RCCGGY	1 cut(s)	125
BsrGI	TGTACA	1 cut(s)	1177
BsrI	ACTGG	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	4 cut(s)	226, 274, 883, 1247
BssMI	GATC	8 cut(s)	64, 90, 249, 487, 586, 607, 870, 1243
BssT1I	CCWWGG	2 cut(s)	274, 1247
Bst2UI	CCWGG	1 cut(s)	771
Bst4CI	ACNGT	3 cut(s)	884, 947, 1315
Bst6I	CTCTTC	1 cut(s)	1086
BstAUI	TGTACA	1 cut(s)	1177
BstBI	TTCGAA	1 cut(s)	451
BstC8I	GCNNGC	4 cut(s)	127, 233, 642, 1219
BstDEI	CTNAG	3 cut(s)	113, 242, 389
BstDSI	CCRYGG	3 cut(s)	226, 883, 1247
BstF5I	GGATG	2 cut(s)	1042, 1132
BstFNI	CGCG	2 cut(s)	228, 822
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	2 cut(s)	270, 824
BstKTI	GATC	8 cut(s)	67, 93, 252, 490, 589, 610, 873, 1246
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	8 cut(s)	64, 90, 249, 487, 586, 607, 870, 1243
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 265, 276
BstNI	CCWGG	1 cut(s)	771
BstNSI	RCATGY	1 cut(s)	1208
BstSCI	CCNGG	1 cut(s)	769
BstSFI	CTRYAG	1 cut(s)	1298
BstUI	CGCG	2 cut(s)	228, 822
BstV1I	GCAGC	3 cut(s)	109, 684, 1284
BsuI	GTATCC	1 cut(s)	504
BsuRI	GGCC	3 cut(s)	462, 676, 953
BtgI	CCRYGG	3 cut(s)	226, 883, 1247
BtgZI	GCGATG	1 cut(s)	498
BtsCI	GGATG	2 cut(s)	1042, 1132
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	2 cut(s)	400, 1311
Cac8I	GCNNGC	4 cut(s)	127, 233, 642, 1219
CciI	TCATGA	1 cut(s)	924
CfoI	GCGC	2 cut(s)	270, 824
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	215
Cfr42I	CCGCGG	1 cut(s)	229
CseI	GACGC	1 cut(s)	783
Csp6I	GTAC	5 cut(s)	82, 190, 714, 1178, 1228
CviAII	CATG	6 cut(s)	35, 79, 925, 975, 1205, 1248
CviQI	GTAC	5 cut(s)	82, 190, 714, 1178, 1228
DdeI	CTNAG	3 cut(s)	113, 242, 389
DpnI	GATC	8 cut(s)	66, 92, 251, 489, 588, 609, 872, 1245
DpnII	GATC	8 cut(s)	64, 90, 249, 487, 586, 607, 870, 1243
DraI	TTTAAA	1 cut(s)	648
EaeI	YGGCCR	1 cut(s)	460
Eam1104I	CTCTTC	1 cut(s)	1086
EarI	CTCTTC	1 cut(s)	1086
Ecl136II	GAGCTC	1 cut(s)	930
Eco130I	CCWWGG	2 cut(s)	274, 1247
Eco24I	GRGCYC	3 cut(s)	237, 303, 932
Eco47I	GGWCC	1 cut(s)	215
Eco53kI	GAGCTC	1 cut(s)	930
EcoICRI	GAGCTC	1 cut(s)	930
EcoRII	CCWGG	1 cut(s)	769
EcoT14I	CCWWGG	2 cut(s)	274, 1247
EcoT38I	GRGCYC	3 cut(s)	237, 303, 932
ErhI	CCWWGG	2 cut(s)	274, 1247
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	6 cut(s)	38, 82, 928, 978, 1208, 1251
FaqI	GGGAC	2 cut(s)	140, 201
FatI	CATG	6 cut(s)	34, 78, 924, 974, 1204, 1247
FauI	CCCGC	1 cut(s)	165
FauNDI	CATATG	1 cut(s)	666
Fnu4HI	GCNGC	4 cut(s)	123, 229, 698, 1298
FokI	GGATG	2 cut(s)	1049, 1139
FriOI	GRGCYC	3 cut(s)	237, 303, 932
Fsp4HI	GCNGC	4 cut(s)	123, 229, 698, 1298
FspBI	CTAG	4 cut(s)	71, 354, 846, 1019
GlaI	GCGC	2 cut(s)	269, 823
GluI	GCNGC	4 cut(s)	123, 229, 698, 1298
GsuI	CTGGAG	1 cut(s)	302
HaeII	RGCGCY	1 cut(s)	271
HaeIII	GGCC	3 cut(s)	462, 676, 953
HapII	CCGG	3 cut(s)	51, 126, 736
HgaI	GACGC	1 cut(s)	783
HhaI	GCGC	2 cut(s)	270, 824
Hin1II	CATG	6 cut(s)	38, 82, 928, 978, 1208, 1251
Hin6I	GCGC	2 cut(s)	268, 822
HinP1I	GCGC	2 cut(s)	268, 822
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HindIII	AAGCTT	2 cut(s)	859, 1219
HinfI	GANTC	4 cut(s)	153, 313, 617, 828
HpaII	CCGG	3 cut(s)	51, 126, 736
HphI	GGTGA	3 cut(s)	31, 901, 982
Hpy166II	GTNNAC	2 cut(s)	312, 1230
Hpy188I	TCNGA	5 cut(s)	152, 245, 604, 1082, 1243
Hpy8I	GTNNAC	2 cut(s)	312, 1230
Hpy99I	CGWCG	2 cut(s)	410, 822
HpyAV	CCTTC	2 cut(s)	229, 1117
HpyCH4III	ACNGT	3 cut(s)	884, 947, 1315
HpyCH4IV	ACGT	1 cut(s)	799
HpyCH4V	TGCA	4 cut(s)	144, 692, 700, 1300
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 265, 276
HpyF3I	CTNAG	3 cut(s)	113, 242, 389
HpySE526I	ACGT	1 cut(s)	799
Hsp92II	CATG	6 cut(s)	38, 82, 928, 978, 1208, 1251
HspAI	GCGC	2 cut(s)	268, 822
Kpn2I	TCCGGA	1 cut(s)	50
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
KspI	CCGCGG	1 cut(s)	229
Kzo9I	GATC	8 cut(s)	64, 90, 249, 487, 586, 607, 870, 1243
LmnI	GCTCC	1 cut(s)	256
Lsp1109I	GCAGC	3 cut(s)	109, 684, 1284
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	4 cut(s)	71, 354, 846, 1019
MaeII	ACGT	1 cut(s)	799
MaeIII	GTNAC	2 cut(s)	37, 368
MalI	GATC	8 cut(s)	66, 92, 251, 489, 588, 609, 872, 1245
MboI	GATC	8 cut(s)	64, 90, 249, 487, 586, 607, 870, 1243
MboII	GAAGA	7 cut(s)	35, 100, 139, 530, 617, 646, 1103
MfeI	CAATTG	1 cut(s)	1072
MhlI	GDGCHC	4 cut(s)	237, 261, 303, 932
MluCI	AATT	4 cut(s)	781, 1072, 1114, 1163
MlyI	GAGTC	3 cut(s)	162, 307, 611
MnlI	CCTC	7 cut(s)	111, 122, 145, 247, 251, 912, 1087
MroI	TCCGGA	1 cut(s)	50
MroNI	GCCGGC	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	1166
MseI	TTAA	5 cut(s)	437, 647, 941, 1110, 1319
MslI	CAYNNNNRTG	3 cut(s)	33, 500, 582
MspA1I	CMGCKG	2 cut(s)	228, 755
MspI	CCGG	3 cut(s)	51, 126, 736
MspR9I	CCNGG	1 cut(s)	771
MunI	CAATTG	1 cut(s)	1072
MvaI	CCWGG	1 cut(s)	771
MvnI	CGCG	2 cut(s)	228, 822
MwoI	GCNNNNNNNGC	3 cut(s)	131, 265, 276
NaeI	GCCGGC	1 cut(s)	127
NcoI	CCATGG	1 cut(s)	1247
NdeI	CATATG	1 cut(s)	666
NdeII	GATC	8 cut(s)	64, 90, 249, 487, 586, 607, 870, 1243
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	6 cut(s)	38, 82, 928, 978, 1208, 1251
NlaIV	GGNNCC	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	1 cut(s)	1208
NspV	TTCGAA	1 cut(s)	451
PagI	TCATGA	1 cut(s)	924
PdiI	GCCGGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	1166
PfeI	GAWTC	1 cut(s)	828
PkrI	GCNGC	4 cut(s)	124, 230, 699, 1299
PleI	GAGTC	3 cut(s)	161, 307, 611
PpsI	GAGTC	3 cut(s)	161, 307, 611
Psp124BI	GAGCTC	1 cut(s)	932
Psp6I	CCWGG	1 cut(s)	769
PspGI	CCWGG	1 cut(s)	769
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	1302
PvuII	CAGCTG	1 cut(s)	755
RsaI	GTAC	5 cut(s)	83, 191, 715, 1179, 1229
RsaNI	GTAC	5 cut(s)	82, 190, 714, 1178, 1228
RseI	CAYNNNNRTG	3 cut(s)	33, 500, 582
SacI	GAGCTC	1 cut(s)	932
SacII	CCGCGG	1 cut(s)	229
SaqAI	TTAA	5 cut(s)	437, 647, 941, 1110, 1319
SatI	GCNGC	4 cut(s)	123, 229, 698, 1298
Sau3AI	GATC	8 cut(s)	64, 90, 249, 487, 586, 607, 870, 1243
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	3 cut(s)	162, 307, 611
ScrFI	CCNGG	1 cut(s)	771
SduI	GDGCHC	4 cut(s)	237, 261, 303, 932
SfaNI	GCATC	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	1298
Sfr303I	CCGCGG	1 cut(s)	229
SfuI	TTCGAA	1 cut(s)	451
SgrBI	CCGCGG	1 cut(s)	229
SinI	GGWCC	1 cut(s)	215
SmiMI	CAYNNNNRTG	3 cut(s)	33, 500, 582
SmlI	CTYRAG	2 cut(s)	545, 572
SmoI	CTYRAG	2 cut(s)	545, 572
Sse9I	AATT	4 cut(s)	781, 1072, 1114, 1163
SsiI	CCGC	3 cut(s)	158, 226, 228
SspMI	CTAG	4 cut(s)	71, 354, 846, 1019
SstI	GAGCTC	1 cut(s)	932
StyD4I	CCNGG	1 cut(s)	769
StyI	CCWWGG	2 cut(s)	274, 1247
TaaI	ACNGT	3 cut(s)	884, 947, 1315
TaiI	ACGT	1 cut(s)	802
TaqI	TCGA	9 cut(s)	171, 252, 384, 408, 441, 451, 894, 1041, 1160
TaqII	GACCGA	1 cut(s)	203
TasI	AATT	4 cut(s)	781, 1072, 1114, 1163
TatI	WGTACW	2 cut(s)	1177, 1227
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	828
Tru1I	TTAA	5 cut(s)	437, 647, 941, 1110, 1319
Tru9I	TTAA	5 cut(s)	437, 647, 941, 1110, 1319
TscAI	CASTG	2 cut(s)	400, 1318
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	3 cut(s)	122, 697, 1297
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	3 cut(s)	71, 913, 1104
TspGWI	ACGGA	2 cut(s)	507, 1206
TspRI	CASTG	2 cut(s)	400, 1318
VpaK11BI	GGWCC	1 cut(s)	215
XceI	RCATGY	1 cut(s)	1208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XmnI	GAANNNNTTC	1 cut(s)	1166
XspI	CTAG	4 cut(s)	71, 354, 846, 1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.