Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026961.1

Orthogroup ID

OG0002063

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 880

Gene Structure 880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026961.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 712 bp

atggataccaatccagttcaagaagaacacaaccatgtcaaccccacctgggaaatgagcagtgatcgcttagcttccatgtaccagaagatagcagaccctccacgactcctcagcaacgcggccggcaaagcctcctgctgcatcttccgagtcccgcagagcctcctcgagataaacggcaaggcttaccagccccacatcgtctccatcggcccctaccaccgcggcgagccccgcctcagaatgatcgaggagcacaagtggcgctacctgggctcgctgctttcaagaacagagcccaaagggttgactctacagcactacttgaagtccatagagccattggaagctagagccagggagtgttactctgagaccatccatctcagcactgatgagttcctagaaatgatggttgttgatggttgcttcttaatcgagttgtttcgaaaagttgggtgtgtggttcggtttgagcgtgatgatccactcagtaatatgttttggatactaccgtttatggtcagggattttcttcgacttgagaaccaaatgccctactttattcttgagcacttgtatgatctgatcaacaaggccgaagatcgtaaagactctgtgaaatccttgtccttgcttgctttgcaattcttcaacatccatttgatgaggcctgaccccgtcatagaaaagctccatagtcttacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

237

Amino Acids

27.75

Weight (kDa)

6.21

Isoelectric Point (pI)

50.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36430
fragaria_vesca	FvH4_6g18050 FvH4_6g18060 FvH4_6g18063
malus_domestica	MD12G1019200.v1.1 MD14G1017100.v1.1
prunus_persica	Prupe.7G116000_v2.0.a1 Prupe.7G116100_v2.0.a1 Prupe.7G116200_v2.0.a1
pyrus_communis	pycom12g01590 pycom12g01610 pycom14g01490
rosa_chinensis	RchiOBHm_Chr3g0472321 RchiOBHm_Chr3g0472331 RchiOBHm_Chr3g0472341
rosa_laevigata	RLG00000024087 RLG00000024112
rosa_multiflora	Rmu_co8308659.1_g000001 Rmu_co8344587.1_g000001 Rmu_co8459455.1_g000001 Rmu_sc0000090.1_g000030 Rmu_sc0000627.1_g000002 Rmu_sc0002532.1_g000004 Rmu_sc0026961.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409010 Rroxscaffold_6G00409020 Rroxscaffold_6G00409030 Rroxscaffold_6G00409070 Rroxscaffold_6G00409360
rosa_rugosa	Rorug03G0123900 Rorug03G0124000 Rorug03G0124100 Rorug03G0124200
rosa_samantha	Rh3AG176300 Rh3AG176500 Rh3BG202000 Rh3BG202100 Rh3BG202200 Rh3DG173000 Rh3DG173200 Rh3DG173300
rosa_wichuraiana	Rw3G016490 Rw3G016500 Rw3G016740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	122, 228
AciI	CCGC	5 cut(s)	122, 158, 226, 228, 238
AclWI	GGATC	1 cut(s)	482
AcoI	YGGCCR	1 cut(s)	123
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	4 cut(s)	20, 291, 331, 658
AjnI	CCWGG	3 cut(s)	47, 273, 359
AluBI	AGCT	3 cut(s)	74, 353, 697
AluI	AGCT	3 cut(s)	74, 353, 697
Alw21I	GWGCWC	2 cut(s)	261, 579
Alw26I	GTCTC	2 cut(s)	211, 371
AlwI	GGATC	1 cut(s)	482
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	4 cut(s)	123, 214, 600, 674
ApeKI	GCWGC	2 cut(s)	141, 283
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	1 cut(s)	215
AsuII	TTCGAA	1 cut(s)	451
AvaI	CYCGRG	1 cut(s)	170
BaeI	ACNNNNGTAYC	2 cut(s)	503, 536
BanII	GRGCYC	3 cut(s)	237, 281, 303
Bbv12I	GWGCWC	2 cut(s)	261, 579
BbvCI	CCTCAGC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	128, 270
BccI	CCATC	5 cut(s)	218, 389, 393, 409, 419
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	3 cut(s)	49, 275, 361
BciVI	GTATCC	1 cut(s)	504
BclI	TGATCA	1 cut(s)	591
BcoDI	GTCTC	2 cut(s)	211, 371
BfaI	CTAG	2 cut(s)	354, 407
BfmI	CTRYAG	1 cut(s)	317
BfoI	RGCGCY	1 cut(s)	271
BfuI	GTATCC	1 cut(s)	504
BisI	GCNGC	4 cut(s)	123, 142, 229, 284
BlpI	GCTNAGC	1 cut(s)	70
BlsI	GCNGC	4 cut(s)	124, 143, 230, 285
Bme1390I	CCNGG	3 cut(s)	49, 275, 361
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	3 cut(s)	49, 275, 361
BmsI	GCATC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
Bpu10I	CCTNAGC	1 cut(s)	113
Bpu1102I	GCTNAGC	1 cut(s)	70
Bpu14I	TTCGAA	1 cut(s)	451
BpuEI	CTTGAG	2 cut(s)	566, 593
BsaBI	GATNNNNATC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	4 cut(s)	48, 226, 274, 360
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 248, 278
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	14
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	3 cut(s)	49, 275, 361
BseDI	CCNNGG	4 cut(s)	48, 226, 274, 360
BseGI	GGATG	2 cut(s)	381, 660
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	5 cut(s)	127, 256, 366, 403, 508
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	3 cut(s)	101, 158, 269
BseX3I	CGGCCG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	128, 270
Bsh1236I	CGCG	2 cut(s)	122, 228
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	4 cut(s)	125, 216, 602, 676
BsiEI	CGRYCG	1 cut(s)	126
BsiHKAI	GWGCWC	2 cut(s)	261, 579
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	2 cut(s)	211, 371
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	4 cut(s)	125, 216, 602, 676
Bso31I	GGTCTC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	451
Bsp1286I	GDGCHC	5 cut(s)	237, 261, 281, 303, 579
Bsp143I	GATC	6 cut(s)	64, 249, 487, 586, 591, 607
Bsp1720I	GCTNAGC	1 cut(s)	70
BspACI	CCGC	5 cut(s)	122, 158, 226, 228, 238
BspANI	GGCC	4 cut(s)	125, 216, 602, 676
BspCNI	CTCAG	5 cut(s)	126, 255, 367, 402, 507
BspFNI	CGCG	2 cut(s)	122, 228
BspLI	GGNNCC	1 cut(s)	217
BspPI	GGATC	1 cut(s)	482
BspT104I	TTCGAA	1 cut(s)	451
BspTNI	GGTCTC	1 cut(s)	371
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	4 cut(s)	48, 226, 274, 360
BssMI	GATC	6 cut(s)	64, 249, 487, 586, 591, 607
Bst2UI	CCWGG	3 cut(s)	49, 275, 361
Bst4CI	ACNGT	1 cut(s)	519
BstBI	TTCGAA	1 cut(s)	451
BstC8I	GCNNGC	4 cut(s)	127, 233, 281, 642
BstDEI	CTNAG	6 cut(s)	70, 113, 242, 375, 389, 494
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	2 cut(s)	381, 660
BstFNI	CGCG	2 cut(s)	122, 228
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	6 cut(s)	67, 252, 490, 589, 594, 610
BstMAI	GTCTC	2 cut(s)	211, 371
BstMBI	GATC	6 cut(s)	64, 249, 487, 586, 591, 607
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	6 cut(s)	66, 131, 237, 265, 276, 646
BstNI	CCWGG	3 cut(s)	49, 275, 361
BstSCI	CCNGG	3 cut(s)	47, 273, 359
BstSFI	CTRYAG	1 cut(s)	317
BstUI	CGCG	2 cut(s)	122, 228
BstV1I	GCAGC	2 cut(s)	128, 270
BstZI	CGGCCG	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	504
BsuRI	GGCC	4 cut(s)	125, 216, 602, 676
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	2 cut(s)	381, 660
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	67, 393
Cac8I	GCNNGC	4 cut(s)	127, 233, 281, 642
CfoI	GCGC	1 cut(s)	270
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	215
Cfr42I	CCGCGG	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	2 cut(s)	35, 79
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	6 cut(s)	70, 113, 242, 375, 389, 494
DpnI	GATC	6 cut(s)	66, 251, 489, 588, 593, 609
DpnII	GATC	6 cut(s)	64, 249, 487, 586, 591, 607
EaeI	YGGCCR	1 cut(s)	123
EagI	CGGCCG	1 cut(s)	123
EclXI	CGGCCG	1 cut(s)	123
Eco147I	AGGCCT	1 cut(s)	676
Eco24I	GRGCYC	3 cut(s)	237, 281, 303
Eco31I	GGTCTC	1 cut(s)	371
Eco52I	CGGCCG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	170
EcoRII	CCWGG	3 cut(s)	47, 273, 359
EcoT38I	GRGCYC	3 cut(s)	237, 281, 303
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	2 cut(s)	38, 82
FaiI	YATR	8 cut(s)	36, 80, 338, 503, 524, 585, 689, 702
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	2 cut(s)	34, 78
FauI	CCCGC	2 cut(s)	165, 245
FbaI	TGATCA	1 cut(s)	591
Fnu4HI	GCNGC	4 cut(s)	123, 142, 229, 284
FokI	GGATG	2 cut(s)	368, 647
FriOI	GRGCYC	3 cut(s)	237, 281, 303
Fsp4HI	GCNGC	4 cut(s)	123, 142, 229, 284
FspBI	CTAG	2 cut(s)	354, 407
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	4 cut(s)	123, 142, 229, 284
HaeII	RGCGCY	1 cut(s)	271
HaeIII	GGCC	4 cut(s)	125, 216, 602, 676
HapII	CCGG	1 cut(s)	126
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	2 cut(s)	38, 82
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HincII	GTYRAC	2 cut(s)	40, 312
HindII	GTYRAC	2 cut(s)	40, 312
HinfI	GANTC	4 cut(s)	108, 153, 313, 617
HpaII	CCGG	1 cut(s)	126
Hpy166II	GTNNAC	2 cut(s)	40, 312
Hpy188I	TCNGA	4 cut(s)	152, 245, 376, 591
Hpy188III	TCNNGA	4 cut(s)	20, 172, 291, 572
Hpy8I	GTNNAC	2 cut(s)	40, 312
HpyCH4III	ACNGT	1 cut(s)	519
HpyCH4V	TGCA	2 cut(s)	144, 649
HpyF10VI	GCNNNNNNNGC	6 cut(s)	66, 131, 237, 265, 276, 646
HpyF3I	CTNAG	6 cut(s)	70, 113, 242, 375, 389, 494
Hsp92II	CATG	2 cut(s)	38, 82
HspAI	GCGC	1 cut(s)	268
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	591
KspI	CCGCGG	1 cut(s)	229
Kzo9I	GATC	6 cut(s)	64, 249, 487, 586, 591, 607
LmnI	GCTCC	2 cut(s)	256, 702
Lsp1109I	GCAGC	2 cut(s)	128, 270
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	2 cut(s)	354, 407
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	6 cut(s)	66, 251, 489, 588, 593, 609
MboI	GATC	6 cut(s)	64, 249, 487, 586, 591, 607
MboII	GAAGA	6 cut(s)	35, 100, 139, 530, 617, 646
MhlI	GDGCHC	5 cut(s)	237, 261, 281, 303, 579
MluCI	AATT	1 cut(s)	650
MlyI	GAGTC	4 cut(s)	102, 162, 307, 611
MnlI	CCTC	8 cut(s)	111, 122, 145, 176, 179, 247, 251, 666
MroNI	GCCGGC	1 cut(s)	125
MseI	TTAA	1 cut(s)	437
MslI	CAYNNNNRTG	2 cut(s)	33, 582
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	3 cut(s)	49, 275, 361
MvaI	CCWGG	3 cut(s)	49, 275, 361
MvnI	CGCG	2 cut(s)	122, 228
MwoI	GCNNNNNNNGC	6 cut(s)	66, 131, 237, 265, 276, 646
NaeI	GCCGGC	1 cut(s)	127
NdeII	GATC	6 cut(s)	64, 249, 487, 586, 591, 607
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	2 cut(s)	38, 82
NlaIV	GGNNCC	1 cut(s)	217
NspV	TTCGAA	1 cut(s)	451
PaeR7I	CTCGAG	1 cut(s)	170
PceI	AGGCCT	1 cut(s)	676
PcsI	WCGNNNNNNNCGW	1 cut(s)	478
PdiI	GCCGGC	1 cut(s)	127
PflFI	GACNNNGTC	1 cut(s)	683
PkrI	GCNGC	4 cut(s)	124, 143, 230, 285
PleI	GAGTC	4 cut(s)	102, 161, 307, 611
PpsI	GAGTC	4 cut(s)	102, 161, 307, 611
Psp6I	CCWGG	3 cut(s)	47, 273, 359
PspGI	CCWGG	3 cut(s)	47, 273, 359
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	215
PsyI	GACNNNGTC	1 cut(s)	683
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	2 cut(s)	33, 582
SacII	CCGCGG	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	437
SatI	GCNGC	4 cut(s)	123, 142, 229, 284
Sau3AI	GATC	6 cut(s)	64, 249, 487, 586, 591, 607
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	4 cut(s)	102, 162, 307, 611
ScrFI	CCNGG	3 cut(s)	49, 275, 361
SduI	GDGCHC	5 cut(s)	237, 261, 281, 303, 579
SetI	ASST	5 cut(s)	50, 76, 276, 355, 699
SfaNI	GCATC	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	317
Sfr274I	CTCGAG	1 cut(s)	170
Sfr303I	CCGCGG	1 cut(s)	229
SfuI	TTCGAA	1 cut(s)	451
SgrBI	CCGCGG	1 cut(s)	229
SlaI	CTCGAG	1 cut(s)	170
SmiMI	CAYNNNNRTG	2 cut(s)	33, 582
SmlI	CTYRAG	3 cut(s)	170, 545, 572
SmoI	CTYRAG	3 cut(s)	170, 545, 572
Sse9I	AATT	1 cut(s)	650
SseBI	AGGCCT	1 cut(s)	676
SsiI	CCGC	5 cut(s)	122, 158, 226, 228, 238
SspMI	CTAG	2 cut(s)	354, 407
StuI	AGGCCT	1 cut(s)	676
StyD4I	CCNGG	3 cut(s)	47, 273, 359
TaaI	ACNGT	1 cut(s)	519
TaqI	TCGA	5 cut(s)	171, 252, 441, 451, 541
TasI	AATT	1 cut(s)	650
TauI	GCSGC	2 cut(s)	125, 231
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TscAI	CASTG	2 cut(s)	67, 400
TseI	GCWGC	2 cut(s)	141, 283
TspRI	CASTG	2 cut(s)	67, 400
Tth111I	GACNNNGTC	1 cut(s)	683
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XhoI	CTCGAG	1 cut(s)	170
XspI	CTAG	2 cut(s)	354, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.