Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002063

Physical Location & Seq

Genomic Coordinates Forward (+)

15218801 .. 15220678

Gene Structure 1878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG173300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAGTACAGAAACCTGTGCATGCCAAAATTCAGGGGTGAATCAACTTCCTAGACCCACAAGGCCGATAAGCAGCTACGGCATGGCTACGATGTCTTCATTGCCATCATCTTTTCCTCATCCCACAAGACCAGTTAGCATAGACCAATACAATGCTCAACAAGTTGTTTATGATGAAACTTTTGTCCATGGGGCACAACTAACTGAAGAGGAAGATAGGGAAGGTCCTGATGGATTGCTTGGGTTCATGTCAGAGCTTATTGAAAAAGTTCCTGCAAAACTAGAACACATATTACTTGATAAATATATGGATCATAGAGAAAATGAAGGTCCTGTCATTGAGGAAAGGGCTACTACTACTACTACTACTAGTCGCGGTCTTCAAGGAACTGGGGAATCATCACCAAAGCTTGAGCGCTTCAAGATCCGAACTGTGGATTTTGGGGATGATGTCAAGGAGGAAGAGAACGTGAAGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.79

Weight (kDa)

4.86

Isoelectric Point (pI)

66.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36430
fragaria_vesca	FvH4_6g18050 FvH4_6g18060 FvH4_6g18063
malus_domestica	MD12G1019200.v1.1 MD14G1017100.v1.1
prunus_persica	Prupe.7G116000_v2.0.a1 Prupe.7G116100_v2.0.a1 Prupe.7G116200_v2.0.a1
pyrus_communis	pycom12g01590 pycom12g01610 pycom14g01490
rosa_chinensis	RchiOBHm_Chr3g0472321 RchiOBHm_Chr3g0472331 RchiOBHm_Chr3g0472341
rosa_laevigata	RLG00000024087 RLG00000024112
rosa_multiflora	Rmu_co8308659.1_g000001 Rmu_co8344587.1_g000001 Rmu_co8459455.1_g000001 Rmu_sc0000090.1_g000030 Rmu_sc0000627.1_g000002 Rmu_sc0002532.1_g000004 Rmu_sc0026961.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409010 Rroxscaffold_6G00409020 Rroxscaffold_6G00409030 Rroxscaffold_6G00409070 Rroxscaffold_6G00409360
rosa_rugosa	Rorug03G0123900 Rorug03G0124000 Rorug03G0124100 Rorug03G0124200
rosa_samantha	Rh3AG176300 Rh3AG176500 Rh3BG202000 Rh3BG202100 Rh3BG202200 Rh3DG173000 Rh3DG173200 Rh3DG173300
rosa_wichuraiana	Rw3G016490 Rw3G016500 Rw3G016740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	375
AciI	CCGC	1 cut(s)	375
AclWI	GGATC	2 cut(s)	318, 418
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	1 cut(s)	7
AfeI	AGCGCT	1 cut(s)	416
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	3 cut(s)	263, 383, 421
AhlI	ACTAGT	1 cut(s)	368
AluBI	AGCT	3 cut(s)	75, 256, 409
AluI	AGCT	3 cut(s)	75, 256, 409
AlwI	GGATC	2 cut(s)	318, 418
Aor51HI	AGCGCT	1 cut(s)	416
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	1 cut(s)	72
ApoI	RAATTY	1 cut(s)	28
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	417
AspS9I	GGNCC	2 cut(s)	224, 329
AsuHPI	GGTGA	2 cut(s)	49, 393
AvaII	GGWCC	2 cut(s)	224, 329
BaeGI	GKGCMC	1 cut(s)	196
BbsI	GAAGAC	2 cut(s)	87, 371
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	2 cut(s)	112, 224
BceAI	ACGGC	1 cut(s)	94
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	3 cut(s)	51, 281, 369
BfoI	RGCGCY	1 cut(s)	418
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
Bme18I	GGWCC	2 cut(s)	224, 329
BmgT120I	GGNCC	2 cut(s)	224, 329
BmrI	ACTGGG	1 cut(s)	399
BmuI	ACTGGG	1 cut(s)	399
BpiI	GAAGAC	2 cut(s)	87, 371
BpuEI	CTTGAG	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	2 cut(s)	131, 394
Bse3DI	GCAATG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	118, 451
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMI	GCAATG	1 cut(s)	98
BseNI	ACTGG	2 cut(s)	131, 394
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	375
BshFI	GGCC	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	433
BsnI	GGCC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	310, 423
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	1 cut(s)	375
BspANI	GGCC	1 cut(s)	64
BspFNI	CGCG	1 cut(s)	375
BspPI	GGATC	2 cut(s)	318, 418
BsrDI	GCAATG	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	131, 394
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	2 cut(s)	310, 423
BssT1I	CCWWGG	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	2 cut(s)	201, 456
BstC8I	GCNNGC	1 cut(s)	22
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	118, 451
BstFNI	CGCG	1 cut(s)	375
BstH2I	RGCGCY	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	2 cut(s)	313, 426
BstMBI	GATC	2 cut(s)	310, 423
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	196
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	84
BstV2I	GAAGAC	2 cut(s)	87, 371
BstX2I	RGATCY	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	423
BsuRI	GGCC	1 cut(s)	64
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	118, 451
Cac8I	GCNNGC	1 cut(s)	22
CfoI	GCGC	1 cut(s)	417
Cfr13I	GGNCC	2 cut(s)	224, 329
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	4 cut(s)	21, 82, 188, 247
CviJI	RGCY	6 cut(s)	64, 75, 86, 256, 350, 409
CviKI_1	RGCY	6 cut(s)	64, 75, 86, 256, 350, 409
CviQI	GTAC	1 cut(s)	6
DpnI	GATC	2 cut(s)	312, 425
DpnII	GATC	2 cut(s)	310, 423
Eam1104I	CTCTTC	2 cut(s)	201, 456
EarI	CTCTTC	2 cut(s)	201, 456
Eco130I	CCWWGG	1 cut(s)	187
Eco47I	GGWCC	2 cut(s)	224, 329
Eco47III	AGCGCT	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	225
EcoO109I	RGGNCCY	2 cut(s)	224, 329
EcoT14I	CCWWGG	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	4 cut(s)	24, 85, 191, 250
FatI	CATG	4 cut(s)	20, 81, 187, 246
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	2 cut(s)	105, 458
Fsp4HI	GCNGC	1 cut(s)	73
FspBI	CTAG	3 cut(s)	51, 281, 369
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	1 cut(s)	73
HaeII	RGCGCY	1 cut(s)	418
HaeIII	GGCC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	417
Hin1II	CATG	4 cut(s)	24, 85, 191, 250
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	2 cut(s)	40, 395
HphI	GGTGA	2 cut(s)	49, 393
Hpy188I	TCNGA	2 cut(s)	253, 428
Hpy188III	TCNNGA	2 cut(s)	227, 421
HpyAV	CCTTC	2 cut(s)	215, 320
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	2 cut(s)	20, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	4 cut(s)	24, 85, 191, 250
HspAI	GCGC	1 cut(s)	415
Kzo9I	GATC	2 cut(s)	310, 423
LpnPI	CCDG	7 cut(s)	18, 28, 144, 240, 285, 345, 375
Lsp1109I	GCAGC	1 cut(s)	84
MaeI	CTAG	3 cut(s)	51, 281, 369
MaeII	ACGT	1 cut(s)	468
MalI	GATC	2 cut(s)	312, 425
MboI	GATC	2 cut(s)	310, 423
MboII	GAAGA	5 cut(s)	87, 218, 224, 371, 473
MflI	RGATCY	1 cut(s)	423
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	1 cut(s)	28
MnlI	CCTC	4 cut(s)	126, 202, 334, 451
MroXI	GAANNNNTTC	1 cut(s)	267
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	1 cut(s)	78
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	2 cut(s)	310, 423
NlaIII	CATG	4 cut(s)	24, 85, 191, 250
NspI	RCATGY	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	40, 395
PkrI	GCNGC	1 cut(s)	74
PpuMI	RGGWCCY	2 cut(s)	224, 329
Psp5II	RGGWCCY	2 cut(s)	224, 329
PspPI	GGNCC	2 cut(s)	224, 329
PspPPI	RGGWCCY	2 cut(s)	224, 329
PsrI	GAACNNNNNNTAC	2 cut(s)	276, 308
PsuI	RGATCY	1 cut(s)	423
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	2 cut(s)	310, 423
Sau96I	GGNCC	2 cut(s)	224, 329
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	7 cut(s)	17, 77, 226, 258, 331, 411, 471
SinI	GGWCC	2 cut(s)	224, 329
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SpeI	ACTAGT	1 cut(s)	368
SphI	GCATGC	1 cut(s)	24
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	1 cut(s)	375
SspMI	CTAG	3 cut(s)	51, 281, 369
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	433
TaiI	ACGT	1 cut(s)	471
TasI	AATT	1 cut(s)	28
TatI	WGTACW	1 cut(s)	5
TfiI	GAWTC	2 cut(s)	40, 395
TseI	GCWGC	1 cut(s)	72
TspDTI	ATGAA	4 cut(s)	87, 189, 235, 339
VpaK11BI	GGWCC	2 cut(s)	224, 329
XapI	RAATTY	1 cut(s)	28
XceI	RCATGY	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	3 cut(s)	51, 281, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.