Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002063

Physical Location & Seq

Genomic Coordinates Reverse (-)

16427982 .. 16428644

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG176300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTTGACTGCCTTTGAAAATGTCAAATTGCAATGTTTCAGTTTTGATTTCTTCAACCCTGATTCCATATATATGTACCAAAGCGAACTTTCAATTCCAAAACAAATTTCTTTGCTCCATAATCTCCTAGAAACGCACCATATAGCAAGAGCTAGCGATCAGACTTTGCGAAGATTTTATAGAATGAGTTCAGAAACCTGTGCATGCCAAAATTCAGGGGTGAATCAACTTCCTAGACCCACAAGGCCGATAAGCAGCTACGGCATGGCTACGATGTCTTCATTGCCTTCATCTTTTCCTCATCCCACAAGACCAGTTAGCATAGACCAATACAATGCTCAACAAGTTGTTTATGATGAAACTTTTGTCCATGGGGCACAACTAACTGAAGACGAAGATAGGGAAGGTCTTGATGGATTGCTTGGGTTCGTGTCAGAGCTTATTGAAAAAGTTCCTGCAAAACTAGAACACATATTACTTGATAAATATATGGATCATAGAGAAAATGAAGGTCCTGTCATTGTGGAAAGGGGTACTACTACTACTACTACTAGTCGCGGTCTTCAAGGAACTGGGGAATCATCACCAAAGCTTGAGCGCTTCAAGATCCGAACTGTGGATTTTGGGGATGATGTCAAGGAGGAAGAGAACGTGAAGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

25.01

Weight (kDa)

5.28

Isoelectric Point (pI)

58.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36430
fragaria_vesca	FvH4_6g18050 FvH4_6g18060 FvH4_6g18063
malus_domestica	MD12G1019200.v1.1 MD14G1017100.v1.1
prunus_persica	Prupe.7G116000_v2.0.a1 Prupe.7G116100_v2.0.a1 Prupe.7G116200_v2.0.a1
pyrus_communis	pycom12g01590 pycom12g01610 pycom14g01490
rosa_chinensis	RchiOBHm_Chr3g0472321 RchiOBHm_Chr3g0472331 RchiOBHm_Chr3g0472341
rosa_laevigata	RLG00000024087 RLG00000024112
rosa_multiflora	Rmu_co8308659.1_g000001 Rmu_co8344587.1_g000001 Rmu_co8459455.1_g000001 Rmu_sc0000090.1_g000030 Rmu_sc0000627.1_g000002 Rmu_sc0002532.1_g000004 Rmu_sc0026961.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409010 Rroxscaffold_6G00409020 Rroxscaffold_6G00409030 Rroxscaffold_6G00409070 Rroxscaffold_6G00409360
rosa_rugosa	Rorug03G0123900 Rorug03G0124000 Rorug03G0124100 Rorug03G0124200
rosa_samantha	Rh3AG176300 Rh3AG176500 Rh3BG202000 Rh3BG202100 Rh3BG202200 Rh3DG173000 Rh3DG173200 Rh3DG173300
rosa_wichuraiana	Rw3G016490 Rw3G016500 Rw3G016740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	558
AciI	CCGC	1 cut(s)	558
AclWI	GGATC	2 cut(s)	501, 601
AcsI	RAATTY	2 cut(s)	105, 211
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	2 cut(s)	77, 535
AfeI	AGCGCT	1 cut(s)	599
AfiI	CCNNNNNNNGG	1 cut(s)	616
AgsI	TTSAA	6 cut(s)	17, 55, 93, 446, 566, 604
AhlI	ACTAGT	1 cut(s)	551
AjuI	GAANNNNNNNTTGG	2 cut(s)	91, 123
AluBI	AGCT	4 cut(s)	152, 258, 439, 592
AluI	AGCT	4 cut(s)	152, 258, 439, 592
AlwI	GGATC	2 cut(s)	501, 601
Aor51HI	AGCGCT	1 cut(s)	599
AoxI	GGCC	1 cut(s)	245
ApeKI	GCWGC	1 cut(s)	255
ApoI	RAATTY	2 cut(s)	105, 211
Asp700I	GAANNNNTTC	2 cut(s)	187, 450
AspLEI	GCGC	1 cut(s)	600
AspS9I	GGNCC	1 cut(s)	512
AsuHPI	GGTGA	2 cut(s)	232, 576
AsuNHI	GCTAGC	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	512
BaeGI	GKGCMC	1 cut(s)	379
BbsI	GAAGAC	3 cut(s)	270, 396, 554
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	1 cut(s)	407
BceAI	ACGGC	1 cut(s)	277
BcuI	ACTAGT	1 cut(s)	551
BfaI	CTAG	5 cut(s)	128, 153, 234, 464, 552
BfoI	RGCGCY	1 cut(s)	601
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	512
BmgT120I	GGNCC	1 cut(s)	512
BmrI	ACTGGG	1 cut(s)	582
BmtI	GCTAGC	1 cut(s)	156
BmuI	ACTGGG	1 cut(s)	582
BpiI	GAAGAC	3 cut(s)	270, 396, 554
BpuEI	CTTGAG	1 cut(s)	614
BsaJI	CCNNGG	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	1 cut(s)	616
Bse1I	ACTGG	2 cut(s)	314, 577
Bse3DI	GCAATG	2 cut(s)	38, 281
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	2 cut(s)	301, 634
BseLI	CCNNNNNNNGG	1 cut(s)	616
BseMI	GCAATG	2 cut(s)	38, 281
BseNI	ACTGG	2 cut(s)	314, 577
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	558
BshFI	GGCC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	616
BsnI	GGCC	1 cut(s)	247
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	3 cut(s)	157, 493, 606
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	1 cut(s)	558
BspANI	GGCC	1 cut(s)	247
BspFNI	CGCG	1 cut(s)	558
BspOI	GCTAGC	1 cut(s)	156
BspPI	GGATC	2 cut(s)	501, 601
BsrDI	GCAATG	2 cut(s)	38, 281
BsrI	ACTGG	2 cut(s)	314, 577
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	3 cut(s)	157, 493, 606
BssT1I	CCWWGG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	616
Bst6I	CTCTTC	1 cut(s)	639
BstC8I	GCNNGC	2 cut(s)	154, 205
BstDSI	CCRYGG	1 cut(s)	370
BstF5I	GGATG	2 cut(s)	301, 634
BstFNI	CGCG	1 cut(s)	558
BstH2I	RGCGCY	1 cut(s)	601
BstHHI	GCGC	1 cut(s)	600
BstKTI	GATC	3 cut(s)	160, 496, 609
BstMBI	GATC	3 cut(s)	157, 493, 606
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	379
BstUI	CGCG	1 cut(s)	558
BstV1I	GCAGC	1 cut(s)	267
BstV2I	GAAGAC	3 cut(s)	270, 396, 554
BstX2I	RGATCY	1 cut(s)	606
BstYI	RGATCY	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	247
BtgI	CCRYGG	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	301, 634
Cac8I	GCNNGC	2 cut(s)	154, 205
CfoI	GCGC	1 cut(s)	600
Cfr13I	GGNCC	1 cut(s)	512
Csp6I	GTAC	2 cut(s)	76, 534
CviAII	CATG	3 cut(s)	204, 265, 371
CviJI	RGCY	6 cut(s)	152, 247, 258, 269, 439, 592
CviKI_1	RGCY	6 cut(s)	152, 247, 258, 269, 439, 592
CviQI	GTAC	2 cut(s)	76, 534
DpnI	GATC	3 cut(s)	159, 495, 608
DpnII	GATC	3 cut(s)	157, 493, 606
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Eco130I	CCWWGG	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	512
Eco47III	AGCGCT	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	512
EcoT14I	CCWWGG	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	3 cut(s)	207, 268, 374
FatI	CATG	3 cut(s)	203, 264, 370
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	2 cut(s)	288, 641
Fsp4HI	GCNGC	1 cut(s)	256
FspBI	CTAG	5 cut(s)	128, 153, 234, 464, 552
GlaI	GCGC	1 cut(s)	599
GluI	GCNGC	1 cut(s)	256
HaeII	RGCGCY	1 cut(s)	601
HaeIII	GGCC	1 cut(s)	247
HhaI	GCGC	1 cut(s)	600
Hin1II	CATG	3 cut(s)	207, 268, 374
Hin6I	GCGC	1 cut(s)	598
HinP1I	GCGC	1 cut(s)	598
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	3 cut(s)	62, 223, 578
HphI	GGTGA	2 cut(s)	232, 576
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	4 cut(s)	162, 193, 436, 611
Hpy188III	TCNNGA	2 cut(s)	410, 604
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	3 cut(s)	297, 398, 503
HpyCH4III	ACNGT	1 cut(s)	616
HpyCH4IV	ACGT	1 cut(s)	651
HpyCH4V	TGCA	3 cut(s)	31, 203, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpySE526I	ACGT	1 cut(s)	651
Hsp92II	CATG	3 cut(s)	207, 268, 374
HspAI	GCGC	1 cut(s)	598
Kzo9I	GATC	3 cut(s)	157, 493, 606
LmnI	GCTCC	1 cut(s)	120
LpnPI	CCDG	7 cut(s)	72, 201, 211, 327, 468, 528, 558
Lsp1109I	GCAGC	1 cut(s)	267
MaeI	CTAG	5 cut(s)	128, 153, 234, 464, 552
MaeII	ACGT	1 cut(s)	651
MalI	GATC	3 cut(s)	159, 495, 608
MboI	GATC	3 cut(s)	157, 493, 606
MboII	GAAGA	7 cut(s)	43, 183, 270, 401, 407, 554, 656
MflI	RGATCY	1 cut(s)	606
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	4 cut(s)	26, 93, 105, 211
MnlI	CCTC	2 cut(s)	309, 634
MroXI	GAANNNNTTC	2 cut(s)	187, 450
MslI	CAYNNNNRTG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	558
MwoI	GCNNNNNNNGC	1 cut(s)	261
NcoI	CCATGG	1 cut(s)	370
NdeII	GATC	3 cut(s)	157, 493, 606
NheI	GCTAGC	1 cut(s)	152
NlaIII	CATG	3 cut(s)	207, 268, 374
NspI	RCATGY	1 cut(s)	207
PaeI	GCATGC	1 cut(s)	207
PdmI	GAANNNNTTC	2 cut(s)	187, 450
PfeI	GAWTC	3 cut(s)	62, 223, 578
PkrI	GCNGC	1 cut(s)	257
PpuMI	RGGWCCY	1 cut(s)	512
Psp5II	RGGWCCY	1 cut(s)	512
PspPI	GGNCC	1 cut(s)	512
PspPPI	RGGWCCY	1 cut(s)	512
PsrI	GAACNNNNNNTAC	2 cut(s)	459, 491
PsuI	RGATCY	1 cut(s)	606
RsaI	GTAC	2 cut(s)	77, 535
RsaNI	GTAC	2 cut(s)	76, 534
RseI	CAYNNNNRTG	1 cut(s)	71
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	3 cut(s)	157, 493, 606
Sau96I	GGNCC	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	379
SetI	ASST	8 cut(s)	154, 200, 260, 409, 441, 514, 594, 654
SinI	GGWCC	1 cut(s)	512
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
SpeI	ACTAGT	1 cut(s)	551
SphI	GCATGC	1 cut(s)	207
Sse9I	AATT	4 cut(s)	26, 93, 105, 211
SsiI	CCGC	1 cut(s)	558
SspMI	CTAG	5 cut(s)	128, 153, 234, 464, 552
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	616
TaiI	ACGT	1 cut(s)	654
TasI	AATT	4 cut(s)	26, 93, 105, 211
TfiI	GAWTC	3 cut(s)	62, 223, 578
TseI	GCWGC	1 cut(s)	255
TspDTI	ATGAA	4 cut(s)	270, 279, 372, 522
VpaK11BI	GGWCC	1 cut(s)	512
XapI	RAATTY	2 cut(s)	105, 211
XceI	RCATGY	1 cut(s)	207
XmnI	GAANNNNTTC	2 cut(s)	187, 450
XspI	CTAG	5 cut(s)	128, 153, 234, 464, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.