RLG00000024112

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002063
Physical Location & Seq
Reverse (-)
32039013 .. 32041660
2648 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024112

Sequence Viewer

Length: 1254 bp
ATGGATACCAATCCAGTTCAAGAAGAACACAACCATGTCACCCCCATCTCCGGAATGAACAATGATCGCCTAGCTTCCATGTACCAGAAGATCGCAGACCCTCCACAACTCCTCAGCAACGCTGCCGGCAAAGCCTCCTGTTGCATCTTCCGAGTCCCGCAGAACCTTGTCGAGATAAACGGCAAGTCGTACCAGCCCCACATCGTCTCCATAGGTCCCTTCCACCGCGGCGAGCCCCACCTCAGAATGATCGAGGAGCACAAGTGGCGCTACCTGGGCTCTCTGCTTTCAAGAACAGAGCCCAAAGGGTTGACTCTCCAGCACTACTTGAAGTCCATAGAGCCAATGGAAGCTAGAGCCAGAGAGTGTTACTCTGAAACAATCCACCTTAGCAGTGATGAGTTCGTTGAAATGATGGTTGTTGATGGTTGCTTCTTAATCGAGATGTTTCGAAAATATGGCCGTGTGGTTCGGTTTGGGCGCGATGATCCACTCATCAGTATGTTCTGGATACTTCCGTTTATGGTTAGAGATTTTCTTCGTCTTGAGAACCAAATCCCCTACTTTATACTTGAGCATTTGTATGATCTGATAACCAAGTCAGAAGATAGTCAAGACCCTGTGAAGTCTTTGTCCTTGCTTGCTTTGGACTTCTTCAACAACCATATGCAGAGGCCGGACGAAGTCATTGCAAAGCTGCATAATCTTACAGGTACGCATTTGCTTGACTTACTCCGGTCAAGTGTGATACCAGCCGACCTTGTTGAACCAGGACGCAGGAATAGTACACCAACCCACATTATACATTGTGTTTCAAGGCTTCGTCGCGCTGGAATCACTCTCAATCCTACTAGCGAATACGAAAGCTTCTTGGTGATCAAGTTCAAGCCTGGAGTTATCGAAATGCCTCCAATCACCATAGACGATTTCATGAGCTCGTTCTTGTTGAACTGTGTGGCCTATGAGCAAAGCCACAAGTCATGCTCTAAACACATCACCACTTACACAGCCTGGCTGGATTGCCTAGTGAATACTTACAAGGATGTCGAGTATTTGCGTGACATAAACATAATCAACAATTACTTCGGAAACGATGAAGAGGTTGCTCATTTTATTAACAATTTGGGGAAGGATGTGGCTTTTGATATTGATAGATGTCATCTGTCGAAATTGTTCAATGAAGTACATCATTATTACCGGAATAGTTGGCATGTTCAATGGGCAACCTTCAAGAACAACGTACTAGGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

418

Amino Acids

48.41

Weight (kDa)

6.15

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 49 - 413 1.1e-112 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 228, 483, 828
AccIII TCCGGA 1 cut(s) 50
AciI CCGC 3 cut(s) 158, 226, 228
AclWI GGATC 1 cut(s) 482
AcoI YGGCCR 1 cut(s) 460
AfaI GTAC 6 cut(s) 83, 191, 715, 787, 1185, 1242
AfiI CCNNNNNNNGG 1 cut(s) 50
AjnI CCWGG 4 cut(s) 273, 769, 889, 1010
AluBI AGCT 5 cut(s) 74, 353, 697, 867, 936
AluI AGCT 5 cut(s) 74, 353, 697, 867, 936
Alw21I GWGCWC 2 cut(s) 261, 938
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 1 cut(s) 482
Aor13HI TCCGGA 1 cut(s) 50
AoxI GGCC 3 cut(s) 460, 674, 957
ApeKI GCWGC 2 cut(s) 122, 697
Asp700I GAANNNNTTC 1 cut(s) 1172
AspLEI GCGC 3 cut(s) 270, 483, 830
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 4 cut(s) 31, 886, 907, 988
AsuII TTCGAA 1 cut(s) 451
AvaII GGWCC 1 cut(s) 215
BaeI ACNNNNGTAYC 2 cut(s) 503, 536
BanII GRGCYC 4 cut(s) 237, 281, 303, 938
Bbv12I GWGCWC 2 cut(s) 261, 938
BbvCI CCTCAGC 1 cut(s) 113
BbvI GCAGC 2 cut(s) 109, 684
BccI CCATC 3 cut(s) 53, 409, 419
BceAI ACGGC 2 cut(s) 196, 447
BcgI CGANNNNNNTGC 2 cut(s) 671, 705
BciT130I CCWGG 4 cut(s) 275, 771, 891, 1012
BciVI GTATCC 1 cut(s) 504
BclI TGATCA 1 cut(s) 876
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 5 cut(s) 71, 354, 852, 1025, 1244
BfoI RGCGCY 1 cut(s) 271
BfuI GTATCC 1 cut(s) 504
BisI GCNGC 3 cut(s) 123, 229, 698
BlsI GCNGC 3 cut(s) 124, 230, 699
Bme1390I CCNGG 4 cut(s) 275, 771, 891, 1012
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 4 cut(s) 275, 771, 891, 1012
BmsI GCATC 1 cut(s) 153
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpmI CTGGAG 2 cut(s) 302, 912
Bpu10I CCTNAGC 2 cut(s) 113, 389
Bpu14I TTCGAA 1 cut(s) 451
BpuEI CTTGAG 2 cut(s) 566, 593
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 226, 274
BsaWI WCCGGW 3 cut(s) 50, 735, 1197
BsaXI ACNNNNNCTCC 4 cut(s) 191, 221, 248, 278
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 687
Bse8I GATNNNNATC 1 cut(s) 9
BseAI TCCGGA 1 cut(s) 50
BseBI CCWGG 4 cut(s) 275, 771, 891, 1012
BseDI CCNNGG 2 cut(s) 226, 274
BseGI GGATG 2 cut(s) 1048, 1138
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMI GCAATG 1 cut(s) 687
BseMII CTCAG 2 cut(s) 127, 256
BseNI ACTGG 1 cut(s) 14
BseRI GAGGAG 2 cut(s) 101, 269
BseXI GCAGC 2 cut(s) 109, 684
Bsh1236I CGCG 3 cut(s) 228, 483, 828
BshFI GGCC 3 cut(s) 462, 676, 959
BsiHKAI GWGCWC 2 cut(s) 261, 938
BsiSI CCGG 5 cut(s) 51, 126, 677, 736, 1198
BslFI GGGAC 2 cut(s) 140, 201
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 211
BsmBI CGTCTC 1 cut(s) 211
BsmFI GGGAC 2 cut(s) 140, 201
BsnI GGCC 3 cut(s) 462, 676, 959
Bsp119I TTCGAA 1 cut(s) 451
Bsp1286I GDGCHC 5 cut(s) 237, 261, 281, 303, 938
Bsp13I TCCGGA 1 cut(s) 50
Bsp143I GATC 6 cut(s) 64, 90, 249, 487, 586, 876
BspACI CCGC 3 cut(s) 158, 226, 228
BspANI GGCC 3 cut(s) 462, 676, 959
BspCNI CTCAG 2 cut(s) 126, 255
BspEI TCCGGA 1 cut(s) 50
BspFNI CGCG 3 cut(s) 228, 483, 828
BspHI TCATGA 1 cut(s) 930
BspLI GGNNCC 1 cut(s) 217
BspPI GGATC 1 cut(s) 482
BspT104I TTCGAA 1 cut(s) 451
BsrDI GCAATG 1 cut(s) 687
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 226, 274
BssMI GATC 6 cut(s) 64, 90, 249, 487, 586, 876
Bst2UI CCWGG 4 cut(s) 275, 771, 891, 1012
Bst4CI ACNGT 1 cut(s) 953
Bst6I CTCTTC 1 cut(s) 1092
BstBI TTCGAA 1 cut(s) 451
BstC8I GCNNGC 3 cut(s) 127, 233, 642
BstDEI CTNAG 3 cut(s) 113, 242, 389
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 2 cut(s) 1048, 1138
BstFNI CGCG 3 cut(s) 228, 483, 828
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 3 cut(s) 270, 483, 830
BstKTI GATC 6 cut(s) 67, 93, 252, 490, 589, 879
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 6 cut(s) 64, 90, 249, 487, 586, 876
BstMWI GCNNNNNNNGC 3 cut(s) 131, 265, 276
BstNI CCWGG 4 cut(s) 275, 771, 891, 1012
BstNSI RCATGY 1 cut(s) 1214
BstSCI CCNGG 4 cut(s) 273, 769, 889, 1010
BstUI CGCG 3 cut(s) 228, 483, 828
BstV1I GCAGC 2 cut(s) 109, 684
BsuI GTATCC 1 cut(s) 504
BsuRI GGCC 3 cut(s) 462, 676, 959
BtgI CCRYGG 1 cut(s) 226
BtgZI GCGATG 1 cut(s) 498
BtsCI GGATG 2 cut(s) 1048, 1138
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 400
Cac8I GCNNGC 3 cut(s) 127, 233, 642
CciI TCATGA 1 cut(s) 930
CfoI GCGC 3 cut(s) 270, 483, 830
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 215
Cfr42I CCGCGG 1 cut(s) 229
CseI GACGC 1 cut(s) 783
Csp6I GTAC 6 cut(s) 82, 190, 714, 786, 1184, 1241
CviAII CATG 5 cut(s) 35, 79, 931, 981, 1211
CviQI GTAC 6 cut(s) 82, 190, 714, 786, 1184, 1241
DdeI CTNAG 3 cut(s) 113, 242, 389
DpnI GATC 6 cut(s) 66, 92, 251, 489, 588, 878
DpnII GATC 6 cut(s) 64, 90, 249, 487, 586, 876
EaeI YGGCCR 1 cut(s) 460
Eam1104I CTCTTC 1 cut(s) 1092
EarI CTCTTC 1 cut(s) 1092
Ecl136II GAGCTC 1 cut(s) 936
Eco24I GRGCYC 4 cut(s) 237, 281, 303, 938
Eco47I GGWCC 1 cut(s) 215
Eco53kI GAGCTC 1 cut(s) 936
EcoICRI GAGCTC 1 cut(s) 936
EcoO109I RGGNCCY 1 cut(s) 215
EcoRII CCWGG 4 cut(s) 273, 769, 889, 1010
EcoT38I GRGCYC 4 cut(s) 237, 281, 303, 938
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 5 cut(s) 38, 82, 934, 984, 1214
FaqI GGGAC 2 cut(s) 140, 201
FatI CATG 5 cut(s) 34, 78, 930, 980, 1210
FauI CCCGC 1 cut(s) 165
FauNDI CATATG 1 cut(s) 666
FbaI TGATCA 1 cut(s) 876
Fnu4HI GCNGC 3 cut(s) 123, 229, 698
FokI GGATG 2 cut(s) 1055, 1145
FriOI GRGCYC 4 cut(s) 237, 281, 303, 938
Fsp4HI GCNGC 3 cut(s) 123, 229, 698
FspBI CTAG 5 cut(s) 71, 354, 852, 1025, 1244
GlaI GCGC 3 cut(s) 269, 482, 829
GluI GCNGC 3 cut(s) 123, 229, 698
GsuI CTGGAG 2 cut(s) 302, 912
HaeII RGCGCY 1 cut(s) 271
HaeIII GGCC 3 cut(s) 462, 676, 959
HapII CCGG 5 cut(s) 51, 126, 677, 736, 1198
HgaI GACGC 1 cut(s) 783
HhaI GCGC 3 cut(s) 270, 483, 830
Hin1II CATG 5 cut(s) 38, 82, 934, 984, 1214
Hin6I GCGC 3 cut(s) 268, 481, 828
HinP1I GCGC 3 cut(s) 268, 481, 828
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 865
HinfI GANTC 3 cut(s) 153, 313, 834
HpaII CCGG 5 cut(s) 51, 126, 677, 736, 1198
HphI GGTGA 4 cut(s) 31, 886, 907, 988
Hpy166II GTNNAC 2 cut(s) 312, 788
Hpy188I TCNGA 6 cut(s) 152, 245, 376, 591, 604, 1088
Hpy8I GTNNAC 2 cut(s) 312, 788
Hpy99I CGWCG 1 cut(s) 828
HpyAV CCTTC 3 cut(s) 229, 1123, 1237
HpyCH4III ACNGT 1 cut(s) 953
HpyCH4IV ACGT 1 cut(s) 1239
HpyCH4V TGCA 4 cut(s) 144, 670, 692, 700
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 265, 276
HpyF3I CTNAG 3 cut(s) 113, 242, 389
HpySE526I ACGT 1 cut(s) 1239
Hsp92II CATG 5 cut(s) 38, 82, 934, 984, 1214
HspAI GCGC 3 cut(s) 268, 481, 828
Kpn2I TCCGGA 1 cut(s) 50
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 876
KspI CCGCGG 1 cut(s) 229
Kzo9I GATC 6 cut(s) 64, 90, 249, 487, 586, 876
LmnI GCTCC 1 cut(s) 256
Lsp1109I GCAGC 2 cut(s) 109, 684
LweI GCATC 1 cut(s) 153
MaeI CTAG 5 cut(s) 71, 354, 852, 1025, 1244
MaeII ACGT 1 cut(s) 1239
MaeIII GTNAC 3 cut(s) 37, 368, 1058
MalI GATC 6 cut(s) 66, 92, 251, 489, 588, 878
MboI GATC 6 cut(s) 64, 90, 249, 487, 586, 876
MboII GAAGA 7 cut(s) 35, 100, 139, 530, 617, 646, 1109
MhlI GDGCHC 5 cut(s) 237, 261, 281, 303, 938
MluCI AATT 3 cut(s) 1078, 1120, 1169
MlyI GAGTC 2 cut(s) 162, 307
MnlI CCTC 8 cut(s) 111, 122, 145, 247, 251, 666, 918, 1093
MroI TCCGGA 1 cut(s) 50
MroNI GCCGGC 1 cut(s) 125
MroXI GAANNNNTTC 1 cut(s) 1172
MseI TTAA 3 cut(s) 437, 1116, 1252
MslI CAYNNNNRTG 3 cut(s) 33, 500, 582
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 5 cut(s) 51, 126, 677, 736, 1198
MspR9I CCNGG 4 cut(s) 275, 771, 891, 1012
MvaI CCWGG 4 cut(s) 275, 771, 891, 1012
MvnI CGCG 3 cut(s) 228, 483, 828
MwoI GCNNNNNNNGC 3 cut(s) 131, 265, 276
NaeI GCCGGC 1 cut(s) 127
NdeI CATATG 1 cut(s) 666
NdeII GATC 6 cut(s) 64, 90, 249, 487, 586, 876
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 5 cut(s) 38, 82, 934, 984, 1214
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 2 cut(s) 37, 1058
NspI RCATGY 1 cut(s) 1214
NspV TTCGAA 1 cut(s) 451
PagI TCATGA 1 cut(s) 930
PdiI GCCGGC 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 1172
PfeI GAWTC 1 cut(s) 834
PflFI GACNNNGTC 1 cut(s) 683
PkrI GCNGC 3 cut(s) 124, 230, 699
PleI GAGTC 2 cut(s) 161, 307
PpsI GAGTC 2 cut(s) 161, 307
PpuMI RGGWCCY 1 cut(s) 215
Psp124BI GAGCTC 1 cut(s) 938
Psp5II RGGWCCY 1 cut(s) 215
Psp6I CCWGG 4 cut(s) 273, 769, 889, 1010
PspGI CCWGG 4 cut(s) 273, 769, 889, 1010
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 1 cut(s) 215
PspPPI RGGWCCY 1 cut(s) 215
PsyI GACNNNGTC 1 cut(s) 683
RsaI GTAC 6 cut(s) 83, 191, 715, 787, 1185, 1242
RsaNI GTAC 6 cut(s) 82, 190, 714, 786, 1184, 1241
RseI CAYNNNNRTG 3 cut(s) 33, 500, 582
SacI GAGCTC 1 cut(s) 938
SacII CCGCGG 1 cut(s) 229
SaqAI TTAA 3 cut(s) 437, 1116, 1252
SatI GCNGC 3 cut(s) 123, 229, 698
Sau3AI GATC 6 cut(s) 64, 90, 249, 487, 586, 876
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 2 cut(s) 162, 307
ScrFI CCNGG 4 cut(s) 275, 771, 891, 1012
SduI GDGCHC 5 cut(s) 237, 261, 281, 303, 938
SfaNI GCATC 1 cut(s) 153
Sfr303I CCGCGG 1 cut(s) 229
SfuI TTCGAA 1 cut(s) 451
SgrBI CCGCGG 1 cut(s) 229
SinI GGWCC 1 cut(s) 215
SmiMI CAYNNNNRTG 3 cut(s) 33, 500, 582
SmlI CTYRAG 2 cut(s) 545, 572
SmoI CTYRAG 2 cut(s) 545, 572
Sse9I AATT 3 cut(s) 1078, 1120, 1169
SsiI CCGC 3 cut(s) 158, 226, 228
SspMI CTAG 5 cut(s) 71, 354, 852, 1025, 1244
SstI GAGCTC 1 cut(s) 938
StyD4I CCNGG 4 cut(s) 273, 769, 889, 1010
TaaI ACNGT 1 cut(s) 953
TaiI ACGT 1 cut(s) 1242
TaqI TCGA 7 cut(s) 171, 252, 441, 451, 900, 1047, 1166
TasI AATT 3 cut(s) 1078, 1120, 1169
TatI WGTACW 2 cut(s) 785, 1183
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 1 cut(s) 834
Tru1I TTAA 3 cut(s) 437, 1116, 1252
Tru9I TTAA 3 cut(s) 437, 1116, 1252
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 2 cut(s) 37, 1058
TseI GCWGC 2 cut(s) 122, 697
Tsp45I GTSAC 2 cut(s) 37, 1058
TspDTI ATGAA 4 cut(s) 71, 919, 1110, 1194
TspGWI ACGGA 1 cut(s) 507
TspRI CASTG 1 cut(s) 400
Tth111I GACNNNGTC 1 cut(s) 683
VpaK11BI GGWCC 1 cut(s) 215
XceI RCATGY 1 cut(s) 1214
XcmI CCANNNNNNNNNTGG 1 cut(s) 343
XmnI GAANNNNTTC 1 cut(s) 1172
XspI CTAG 5 cut(s) 71, 354, 852, 1025, 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.