Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8308659.1

Orthogroup ID

OG0002063

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 718

Gene Structure 718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8308659.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 718 bp

taccaatccagttcaagaagaacacaaccatgtcacccccatctccggaatgaacaatgatcgcctagcttccatgtaccagaagatcgcagaccctccacaactcctcagcaacgctgccggcaaagcctcctgttgcatcttccgagtcccgcagaaccttgtcgagataaacggcaagtcgtaccagccccacatcgtctccatcggtcccttccaccgcggcgagccccacctcagaatgatcgaggagcacaagtggcgctaccttggctctctgctttcaagaacagagcccaaagggttgactctccagcactacttgaagtccatagagccaatggaagctagagccagagagtgttacgctgaaacaatcgaccttagcagtgatgagttcgtcgaaatgatggttgttgatggttgcttcttaatcgagatgtttcgaaaatatggccgtgtggttcggtttgagagcgatgatccactcatcaatatgttctggatacttccgtttatggttagagattttcttcgtcttgagaaccaaatcccctactttatacttgagcatttgtatgatctaataaccaagtcagaagatcgtcaagactctgtgaagtctttgtccttgcttgctttggacttcttcaacaaccatatgatgaggccgcaagaagtcattgcaaagctgcataatctttcaggcatggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

238

Amino Acids

27.67

Weight (kDa)

5.92

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36430
fragaria_vesca	FvH4_6g18050 FvH4_6g18060 FvH4_6g18063
malus_domestica	MD12G1019200.v1.1 MD14G1017100.v1.1
prunus_persica	Prupe.7G116000_v2.0.a1 Prupe.7G116100_v2.0.a1 Prupe.7G116200_v2.0.a1
pyrus_communis	pycom12g01590 pycom12g01610 pycom14g01490
rosa_chinensis	RchiOBHm_Chr3g0472321 RchiOBHm_Chr3g0472331 RchiOBHm_Chr3g0472341
rosa_laevigata	RLG00000024087 RLG00000024112
rosa_multiflora	Rmu_co8308659.1_g000001 Rmu_co8344587.1_g000001 Rmu_co8459455.1_g000001 Rmu_sc0000090.1_g000030 Rmu_sc0000627.1_g000002 Rmu_sc0002532.1_g000004 Rmu_sc0026961.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409010 Rroxscaffold_6G00409020 Rroxscaffold_6G00409030 Rroxscaffold_6G00409070 Rroxscaffold_6G00409360
rosa_rugosa	Rorug03G0123900 Rorug03G0124000 Rorug03G0124100 Rorug03G0124200
rosa_samantha	Rh3AG176300 Rh3AG176500 Rh3BG202000 Rh3BG202100 Rh3BG202200 Rh3DG173000 Rh3DG173200 Rh3DG173300
rosa_wichuraiana	Rw3G016490 Rw3G016500 Rw3G016740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	223
AccIII	TCCGGA	1 cut(s)	45
AciI	CCGC	4 cut(s)	153, 221, 223, 672
AclWI	GGATC	1 cut(s)	477
AcoI	YGGCCR	1 cut(s)	455
AfaI	GTAC	2 cut(s)	78, 186
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	4 cut(s)	15, 286, 326, 653
AluBI	AGCT	3 cut(s)	69, 348, 692
AluI	AGCT	3 cut(s)	69, 348, 692
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	477
Aor13HI	TCCGGA	1 cut(s)	45
AoxI	GGCC	2 cut(s)	455, 669
ApeKI	GCWGC	2 cut(s)	117, 692
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	26
AsuII	TTCGAA	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	210
BaeI	ACNNNNGTAYC	2 cut(s)	498, 531
BanII	GRGCYC	2 cut(s)	232, 298
Bbv12I	GWGCWC	1 cut(s)	256
BbvCI	CCTCAGC	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	104, 679
BccI	CCATC	4 cut(s)	48, 213, 404, 414
BceAI	ACGGC	2 cut(s)	191, 442
BciVI	GTATCC	1 cut(s)	499
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	2 cut(s)	66, 349
BfoI	RGCGCY	1 cut(s)	266
BfuI	GTATCC	1 cut(s)	499
BisI	GCNGC	4 cut(s)	118, 224, 672, 693
BlsI	GCNGC	4 cut(s)	119, 225, 673, 694
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	212
BmsI	GCATC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	297
Bpu10I	CCTNAGC	2 cut(s)	108, 384
Bpu14I	TTCGAA	1 cut(s)	446
BpuEI	CTTGAG	2 cut(s)	561, 588
BsaJI	CCNNGG	2 cut(s)	221, 269
BsaWI	WCCGGW	1 cut(s)	45
BsaXI	ACNNNNNCTCC	4 cut(s)	186, 216, 243, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse118I	RCCGGY	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	9
Bse3DI	GCAATG	1 cut(s)	682
BseAI	TCCGGA	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	221, 269
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	682
BseMII	CTCAG	2 cut(s)	122, 251
BseNI	ACTGG	1 cut(s)	9
BseRI	GAGGAG	2 cut(s)	96, 264
BseXI	GCAGC	2 cut(s)	104, 679
Bsh1236I	CGCG	1 cut(s)	223
BshFI	GGCC	2 cut(s)	457, 671
BsiHKAI	GWGCWC	1 cut(s)	256
BsiSI	CCGG	2 cut(s)	46, 121
BslFI	GGGAC	2 cut(s)	135, 196
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	206
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	2 cut(s)	135, 196
BsnI	GGCC	2 cut(s)	457, 671
Bsp119I	TTCGAA	1 cut(s)	446
Bsp1286I	GDGCHC	3 cut(s)	232, 256, 298
Bsp13I	TCCGGA	1 cut(s)	45
Bsp143I	GATC	6 cut(s)	59, 85, 244, 482, 581, 602
BspACI	CCGC	4 cut(s)	153, 221, 223, 672
BspANI	GGCC	2 cut(s)	457, 671
BspCNI	CTCAG	2 cut(s)	121, 250
BspEI	TCCGGA	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	477
BspT104I	TTCGAA	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	682
BsrFI	RCCGGY	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	9
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	2 cut(s)	221, 269
BssMI	GATC	6 cut(s)	59, 85, 244, 482, 581, 602
BssT1I	CCWWGG	1 cut(s)	269
BstBI	TTCGAA	1 cut(s)	446
BstC8I	GCNNGC	3 cut(s)	122, 228, 637
BstDEI	CTNAG	3 cut(s)	108, 237, 384
BstDSI	CCRYGG	1 cut(s)	221
BstFNI	CGCG	1 cut(s)	223
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	6 cut(s)	62, 88, 247, 485, 584, 605
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	6 cut(s)	59, 85, 244, 482, 581, 602
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 260, 271
BstUI	CGCG	1 cut(s)	223
BstV1I	GCAGC	2 cut(s)	104, 679
BsuI	GTATCC	1 cut(s)	499
BsuRI	GGCC	2 cut(s)	457, 671
BtgI	CCRYGG	1 cut(s)	221
BtgZI	GCGATG	1 cut(s)	493
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	1 cut(s)	395
Cac8I	GCNNGC	3 cut(s)	122, 228, 637
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	210
Cfr42I	CCGCGG	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	77, 185
CviAII	CATG	3 cut(s)	30, 74, 710
CviQI	GTAC	2 cut(s)	77, 185
DdeI	CTNAG	3 cut(s)	108, 237, 384
DpnI	GATC	6 cut(s)	61, 87, 246, 484, 583, 604
DpnII	GATC	6 cut(s)	59, 85, 244, 482, 581, 602
EaeI	YGGCCR	1 cut(s)	455
Eco130I	CCWWGG	1 cut(s)	269
Eco24I	GRGCYC	2 cut(s)	232, 298
Eco47I	GGWCC	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	269
EcoT38I	GRGCYC	2 cut(s)	232, 298
ErhI	CCWWGG	1 cut(s)	269
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	3 cut(s)	33, 77, 713
FaqI	GGGAC	2 cut(s)	135, 196
FatI	CATG	3 cut(s)	29, 73, 709
FauI	CCCGC	1 cut(s)	160
FauNDI	CATATG	1 cut(s)	661
Fnu4HI	GCNGC	4 cut(s)	118, 224, 672, 693
FriOI	GRGCYC	2 cut(s)	232, 298
Fsp4HI	GCNGC	4 cut(s)	118, 224, 672, 693
FspBI	CTAG	2 cut(s)	66, 349
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	4 cut(s)	118, 224, 672, 693
GsuI	CTGGAG	1 cut(s)	297
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	2 cut(s)	457, 671
HapII	CCGG	2 cut(s)	46, 121
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	33, 77, 713
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	3 cut(s)	148, 308, 612
HpaII	CCGG	2 cut(s)	46, 121
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	3 cut(s)	147, 240, 599
Hpy188III	TCNNGA	8 cut(s)	15, 46, 167, 286, 437, 503, 540, 609
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	405
HpyAV	CCTTC	1 cut(s)	224
HpyCH4V	TGCA	3 cut(s)	139, 687, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 260, 271
HpyF3I	CTNAG	3 cut(s)	108, 237, 384
Hsp92II	CATG	3 cut(s)	33, 77, 713
HspAI	GCGC	1 cut(s)	263
Kpn2I	TCCGGA	1 cut(s)	45
KroI	GCCGGC	1 cut(s)	120
KroNI	GCCGGC	1 cut(s)	122
KspI	CCGCGG	1 cut(s)	224
Kzo9I	GATC	6 cut(s)	59, 85, 244, 482, 581, 602
LmnI	GCTCC	1 cut(s)	251
Lsp1109I	GCAGC	2 cut(s)	104, 679
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	2 cut(s)	66, 349
MaeIII	GTNAC	2 cut(s)	32, 363
MalI	GATC	6 cut(s)	61, 87, 246, 484, 583, 604
MboI	GATC	6 cut(s)	59, 85, 244, 482, 581, 602
MboII	GAAGA	6 cut(s)	30, 95, 134, 525, 612, 641
MhlI	GDGCHC	3 cut(s)	232, 256, 298
MlyI	GAGTC	3 cut(s)	157, 302, 606
MnlI	CCTC	6 cut(s)	106, 117, 140, 242, 246, 661
MroI	TCCGGA	1 cut(s)	45
MroNI	GCCGGC	1 cut(s)	120
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	3 cut(s)	28, 495, 577
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	2 cut(s)	46, 121
MvnI	CGCG	1 cut(s)	223
MwoI	GCNNNNNNNGC	3 cut(s)	126, 260, 271
NaeI	GCCGGC	1 cut(s)	122
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	6 cut(s)	59, 85, 244, 482, 581, 602
NgoMIV	GCCGGC	1 cut(s)	120
NlaIII	CATG	3 cut(s)	33, 77, 713
NlaIV	GGNNCC	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	32
NspV	TTCGAA	1 cut(s)	446
PdiI	GCCGGC	1 cut(s)	122
PkrI	GCNGC	4 cut(s)	119, 225, 673, 694
PleI	GAGTC	3 cut(s)	156, 302, 606
PpsI	GAGTC	3 cut(s)	156, 302, 606
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	210
RsaI	GTAC	2 cut(s)	78, 186
RsaNI	GTAC	2 cut(s)	77, 185
RseI	CAYNNNNRTG	3 cut(s)	28, 495, 577
SacII	CCGCGG	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	4 cut(s)	118, 224, 672, 693
Sau3AI	GATC	6 cut(s)	59, 85, 244, 482, 581, 602
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	3 cut(s)	157, 302, 606
SduI	GDGCHC	3 cut(s)	232, 256, 298
SetI	ASST	7 cut(s)	71, 163, 238, 271, 350, 385, 694
SfaNI	GCATC	1 cut(s)	148
Sfr303I	CCGCGG	1 cut(s)	224
SfuI	TTCGAA	1 cut(s)	446
SgrBI	CCGCGG	1 cut(s)	224
SinI	GGWCC	1 cut(s)	210
SmiMI	CAYNNNNRTG	3 cut(s)	28, 495, 577
SmlI	CTYRAG	2 cut(s)	540, 567
SmoI	CTYRAG	2 cut(s)	540, 567
SsiI	CCGC	4 cut(s)	153, 221, 223, 672
SspMI	CTAG	2 cut(s)	66, 349
StyI	CCWWGG	1 cut(s)	269
TaqI	TCGA	6 cut(s)	166, 247, 379, 403, 436, 446
TaqII	GACCGA	1 cut(s)	198
TauI	GCSGC	2 cut(s)	226, 674
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	1 cut(s)	395
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	2 cut(s)	117, 692
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	1 cut(s)	66
TspGWI	ACGGA	1 cut(s)	502
TspRI	CASTG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338
XspI	CTAG	2 cut(s)	66, 349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.