Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002063

Physical Location & Seq

Genomic Coordinates Reverse (-)

11852624 .. 11853097

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGTTCAGAAACCTGTGCATGCCAGAATTATGGAGTGAATCAACTTCCTAAACTCACAAGATCAATGAGCAGCTGCGATATGGCTTCGATATCTTCATTGCCTTCATCTTTTCCTCATCCCACAAGACCGGTTAGCATAGACCAATACAATGCTCCACAAGATGTTTATAATGAAACTTTTGTCCATGAGGCACAACCAACTGAAGAGGAAGATAGGGAAGGTCTTCATGGGTTACTTGGGTTCATCTCAGAGCTTTTTGAAAAAGTTCCTGCAAAACTAGATCACATATTACTTGATAACTATATGAATCATAGAGAAAATGAAGGTCCTGTCATTGTGGAAAGGGGTTCAACCACTACTAGCCGTGGCCTTCAAGAAACTGGGGACTCATCAAAGAAGCTTGAGCGCTTCAAGATCCGAACTCAGGATTTTGATGACGATGTCAAGGAGGAACAGAACGTCAAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.79

Weight (kDa)

4.92

Isoelectric Point (pI)

66.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36430
fragaria_vesca	FvH4_6g18050 FvH4_6g18060 FvH4_6g18063
malus_domestica	MD12G1019200.v1.1 MD14G1017100.v1.1
prunus_persica	Prupe.7G116000_v2.0.a1 Prupe.7G116100_v2.0.a1 Prupe.7G116200_v2.0.a1
pyrus_communis	pycom12g01590 pycom12g01610 pycom14g01490
rosa_chinensis	RchiOBHm_Chr3g0472321 RchiOBHm_Chr3g0472331 RchiOBHm_Chr3g0472341
rosa_laevigata	RLG00000024087 RLG00000024112
rosa_multiflora	Rmu_co8308659.1_g000001 Rmu_co8344587.1_g000001 Rmu_co8459455.1_g000001 Rmu_sc0000090.1_g000030 Rmu_sc0000627.1_g000002 Rmu_sc0002532.1_g000004 Rmu_sc0026961.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409010 Rroxscaffold_6G00409020 Rroxscaffold_6G00409030 Rroxscaffold_6G00409070 Rroxscaffold_6G00409360
rosa_rugosa	Rorug03G0123900 Rorug03G0124000 Rorug03G0124100 Rorug03G0124200
rosa_samantha	Rh3AG176300 Rh3AG176500 Rh3BG202000 Rh3BG202100 Rh3BG202200 Rh3DG173000 Rh3DG173200 Rh3DG173300
rosa_wichuraiana	Rw3G016490 Rw3G016500 Rw3G016740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
AclWI	GGATC	1 cut(s)	412
AcuI	CTGAAG	1 cut(s)	225
AfeI	AGCGCT	1 cut(s)	410
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgeI	ACCGGT	1 cut(s)	130
AgsI	TTSAA	4 cut(s)	263, 354, 377, 415
AluBI	AGCT	3 cut(s)	75, 256, 403
AluI	AGCT	3 cut(s)	75, 256, 403
AlwI	GGATC	1 cut(s)	412
Aor51HI	AGCGCT	1 cut(s)	410
AoxI	GGCC	1 cut(s)	370
ApeKI	GCWGC	2 cut(s)	72, 75
AsiGI	ACCGGT	1 cut(s)	130
Asp700I	GAANNNNTTC	2 cut(s)	225, 267
AspLEI	GCGC	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	2 cut(s)	62, 84
BceAI	ACGGC	1 cut(s)	351
BfaI	CTAG	2 cut(s)	281, 363
BfoI	RGCGCY	1 cut(s)	412
BisI	GCNGC	2 cut(s)	73, 76
BlsI	GCNGC	2 cut(s)	74, 77
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
BmrI	ACTGGG	1 cut(s)	393
BmuI	ACTGGG	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	367
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	388
Bse3DI	GCAATG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	98
BseMII	CTCAG	2 cut(s)	264, 440
BseNI	ACTGG	1 cut(s)	388
BseXI	GCAGC	2 cut(s)	62, 84
BshFI	GGCC	1 cut(s)	372
BshTI	ACCGGT	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	1 cut(s)	372
Bsp143I	GATC	3 cut(s)	62, 283, 417
BspANI	GGCC	1 cut(s)	372
BspCNI	CTCAG	2 cut(s)	263, 439
BspPI	GGATC	1 cut(s)	412
BsrDI	GCAATG	1 cut(s)	98
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	388
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	3 cut(s)	62, 283, 417
Bst6I	CTCTTC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	2 cut(s)	250, 426
BstDSI	CCRYGG	1 cut(s)	367
BstF5I	GGATG	1 cut(s)	118
BstH2I	RGCGCY	1 cut(s)	412
BstHHI	GCGC	1 cut(s)	411
BstKTI	GATC	3 cut(s)	65, 286, 420
BstMBI	GATC	3 cut(s)	62, 283, 417
BstNSI	RCATGY	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	62, 84
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	417
BstXI	CCANNNNNNTGG	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	372
BtgI	CCRYGG	1 cut(s)	367
BtsCI	GGATG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	22
CfoI	GCGC	1 cut(s)	411
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	329
CspAI	ACCGGT	1 cut(s)	130
CviAII	CATG	3 cut(s)	21, 188, 230
CviJI	RGCY	6 cut(s)	75, 86, 256, 366, 372, 403
CviKI_1	RGCY	6 cut(s)	75, 86, 256, 366, 372, 403
DdeI	CTNAG	2 cut(s)	250, 426
DpnI	GATC	3 cut(s)	64, 285, 419
DpnII	GATC	3 cut(s)	62, 283, 417
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	329
Eco47III	AGCGCT	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	329
EcoRV	GATATC	1 cut(s)	93
FaeI	CATG	3 cut(s)	24, 191, 233
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	3 cut(s)	20, 187, 229
Fnu4HI	GCNGC	2 cut(s)	73, 76
FokI	GGATG	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	73, 76
FspBI	CTAG	2 cut(s)	281, 363
GlaI	GCGC	1 cut(s)	410
GluI	GCNGC	2 cut(s)	73, 76
HaeII	RGCGCY	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	372
HapII	CCGG	1 cut(s)	131
HhaI	GCGC	1 cut(s)	411
Hin1II	CATG	3 cut(s)	24, 191, 233
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	3 cut(s)	40, 310, 389
HpaII	CCGG	1 cut(s)	131
Hpy188I	TCNGA	3 cut(s)	10, 253, 422
Hpy188III	TCNNGA	3 cut(s)	377, 415, 428
HpyAV	CCTTC	4 cut(s)	114, 215, 320, 383
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	2 cut(s)	20, 275
HpyF3I	CTNAG	2 cut(s)	250, 426
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	3 cut(s)	24, 191, 233
HspAI	GCGC	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	62, 283, 417
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	7 cut(s)	28, 38, 144, 285, 345, 369, 413
Lsp1109I	GCAGC	2 cut(s)	62, 84
MaeI	CTAG	2 cut(s)	281, 363
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	1 cut(s)	234
MalI	GATC	3 cut(s)	64, 285, 419
MboI	GATC	3 cut(s)	62, 283, 417
MboII	GAAGA	4 cut(s)	87, 218, 218, 224
MflI	RGATCY	1 cut(s)	417
MluCI	AATT	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	383
MnlI	CCTC	4 cut(s)	126, 184, 202, 445
MroXI	GAANNNNTTC	2 cut(s)	225, 267
MseI	TTAA	1 cut(s)	472
MspA1I	CMGCKG	1 cut(s)	75
MspI	CCGG	1 cut(s)	131
NdeII	GATC	3 cut(s)	62, 283, 417
NlaIII	CATG	3 cut(s)	24, 191, 233
NspI	RCATGY	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	24
PdmI	GAANNNNTTC	2 cut(s)	225, 267
PfeI	GAWTC	2 cut(s)	40, 310
PflFI	GACNNNGTC	1 cut(s)	443
PinAI	ACCGGT	1 cut(s)	130
PkrI	GCNGC	2 cut(s)	74, 77
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
PpuMI	RGGWCCY	1 cut(s)	329
PsiI	TTATAA	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	329
PspPI	GGNCC	1 cut(s)	329
PspPPI	RGGWCCY	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	417
PsyI	GACNNNGTC	1 cut(s)	443
PvuII	CAGCTG	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	472
SatI	GCNGC	2 cut(s)	73, 76
Sau3AI	GATC	3 cut(s)	62, 283, 417
Sau96I	GGNCC	1 cut(s)	329
SchI	GAGTC	1 cut(s)	383
SetI	ASST	7 cut(s)	17, 77, 226, 258, 331, 405, 465
SinI	GGWCC	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SphI	GCATGC	1 cut(s)	24
Sse9I	AATT	1 cut(s)	28
SspMI	CTAG	2 cut(s)	281, 363
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	1 cut(s)	89
TasI	AATT	1 cut(s)	28
TfiI	GAWTC	2 cut(s)	40, 310
Tru1I	TTAA	1 cut(s)	472
Tru9I	TTAA	1 cut(s)	472
TseI	GCWGC	2 cut(s)	72, 75
TspDTI	ATGAA	7 cut(s)	87, 96, 189, 218, 235, 323, 339
Tth111I	GACNNNGTC	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	329
XceI	RCATGY	1 cut(s)	24
XmnI	GAANNNNTTC	2 cut(s)	225, 267
XspI	CTAG	2 cut(s)	281, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.