Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002063

Physical Location & Seq

Genomic Coordinates Forward (+)

14131458 .. 14132109

Gene Structure 652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G116200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAGCTCAATGTCCTCAGAGCCTTTACAGTTCTTAATGCTTCATATGAGCGCTGGTACTTCTGGTGTTCATGTTAACGAGGAAGAAGGGCAAGCACTTGATGGCTTACTTGGGTTCATATCAGAGCTTTGGGAAAAAGCACCTGCAAAAATAGCAGACCAATTACTTAATGTGGATGGAACCAAAGCTCGAACCGCTGCGCAGAAGGTTACAAGTACGCACGGCCTTCAAGGATCAGTGGAGGAGTTGTTACACAAGCTTGAGCGCTTCAAGATACGGACTTATGATTTGGGAGGGGTTGTGAAGGAGGAAGATAAGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

11.74

Weight (kDa)

5.51

Isoelectric Point (pI)

53.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36430
fragaria_vesca	FvH4_6g18050 FvH4_6g18060 FvH4_6g18063
malus_domestica	MD12G1019200.v1.1 MD14G1017100.v1.1
prunus_persica	Prupe.7G116000_v2.0.a1 Prupe.7G116100_v2.0.a1 Prupe.7G116200_v2.0.a1
pyrus_communis	pycom12g01590 pycom12g01610 pycom14g01490
rosa_chinensis	RchiOBHm_Chr3g0472321 RchiOBHm_Chr3g0472331 RchiOBHm_Chr3g0472341
rosa_laevigata	RLG00000024087 RLG00000024112
rosa_multiflora	Rmu_co8308659.1_g000001 Rmu_co8344587.1_g000001 Rmu_co8459455.1_g000001 Rmu_sc0000090.1_g000030 Rmu_sc0000627.1_g000002 Rmu_sc0002532.1_g000004 Rmu_sc0026961.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409010 Rroxscaffold_6G00409020 Rroxscaffold_6G00409030 Rroxscaffold_6G00409070 Rroxscaffold_6G00409360
rosa_rugosa	Rorug03G0123900 Rorug03G0124000 Rorug03G0124100 Rorug03G0124200
rosa_samantha	Rh3AG176300 Rh3AG176500 Rh3BG202000 Rh3BG202100 Rh3BG202200 Rh3DG173000 Rh3DG173200 Rh3DG173300
rosa_wichuraiana	Rw3G016490 Rw3G016500 Rw3G016740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	151
Acc16I	TGCGCA	1 cut(s)	201
Acc36I	ACCTGC	1 cut(s)	151
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	1 cut(s)	241
AfaI	GTAC	2 cut(s)	58, 217
AfeI	AGCGCT	2 cut(s)	52, 266
AgsI	TTSAA	2 cut(s)	230, 271
AluBI	AGCT	4 cut(s)	6, 127, 188, 259
AluI	AGCT	4 cut(s)	6, 127, 188, 259
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	241
Aor51HI	AGCGCT	2 cut(s)	52, 266
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	1 cut(s)	197
ArsI	GACNNNNNNTTYG	2 cut(s)	271, 303
AspLEI	GCGC	3 cut(s)	53, 202, 267
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	2 cut(s)	95, 170
BceAI	ACGGC	1 cut(s)	238
BfoI	RGCGCY	2 cut(s)	54, 268
BfuAI	ACCTGC	1 cut(s)	151
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	281
BsaXI	ACNNNNNCTCC	4 cut(s)	233, 263, 285, 315
BseGI	GGATG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	8
BsnI	GGCC	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	233
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	151
BspPI	GGATC	1 cut(s)	241
BssMI	GATC	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	181
BstH2I	RGCGCY	2 cut(s)	54, 268
BstHHI	GCGC	3 cut(s)	53, 202, 267
BstKTI	GATC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 194
BstV1I	GCAGC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	243
BveI	ACCTGC	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	93
CfoI	GCGC	3 cut(s)	53, 202, 267
Csp6I	GTAC	2 cut(s)	57, 216
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	7 cut(s)	6, 22, 105, 127, 188, 225, 259
CviKI_1	RGCY	7 cut(s)	6, 22, 105, 127, 188, 225, 259
CviQI	GTAC	2 cut(s)	57, 216
DdeI	CTNAG	1 cut(s)	16
DpnI	GATC	1 cut(s)	235
DpnII	GATC	1 cut(s)	233
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco47III	AGCGCT	2 cut(s)	52, 266
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	1 cut(s)	74
FaiI	YATR	5 cut(s)	45, 47, 72, 119, 285
FatI	CATG	1 cut(s)	70
FauNDI	CATATG	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	198
FspI	TGCGCA	1 cut(s)	201
GlaI	GCGC	3 cut(s)	52, 201, 266
GluI	GCNGC	1 cut(s)	198
HaeII	RGCGCY	2 cut(s)	54, 268
HaeIII	GGCC	1 cut(s)	225
HhaI	GCGC	3 cut(s)	53, 202, 267
Hin1II	CATG	1 cut(s)	74
Hin6I	GCGC	3 cut(s)	51, 200, 265
HinP1I	GCGC	3 cut(s)	51, 200, 265
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	257
HpaI	GTTAAC	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	19, 124
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	4 cut(s)	80, 199, 236, 298
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4V	TGCA	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 194
HpyF3I	CTNAG	1 cut(s)	16
Hsp92II	CATG	1 cut(s)	74
HspAI	GCGC	3 cut(s)	51, 200, 265
KspAI	GTTAAC	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	233
LpnPI	CCDG	3 cut(s)	39, 48, 156
Lsp1109I	GCAGC	1 cut(s)	184
MaeIII	GTNAC	2 cut(s)	208, 249
MalI	GATC	1 cut(s)	235
MboI	GATC	1 cut(s)	233
MboII	GAAGA	2 cut(s)	95, 323
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	161
MnlI	CCTC	5 cut(s)	25, 73, 235, 287, 301
MseI	TTAA	3 cut(s)	35, 75, 168
MspA1I	CMGCKG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	152, 194
NdeI	CATATG	1 cut(s)	45
NdeII	GATC	1 cut(s)	233
NlaIII	CATG	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	181
NsbI	TGCGCA	1 cut(s)	201
PaqCI	CACCTGC	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	199
Psp124BI	GAGCTC	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	181
RsaI	GTAC	2 cut(s)	58, 217
RsaNI	GTAC	2 cut(s)	57, 216
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	3 cut(s)	35, 75, 168
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	6 cut(s)	8, 129, 145, 190, 210, 261
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	1 cut(s)	195
SstI	GAGCTC	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	190
TasI	AATT	1 cut(s)	161
Tru1I	TTAA	3 cut(s)	35, 75, 168
Tru9I	TTAA	3 cut(s)	35, 75, 168
TscAI	CASTG	1 cut(s)	243
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	3 cut(s)	32, 59, 106
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.