Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002063

Physical Location & Seq

Genomic Coordinates Forward (+)

31551888 .. 31553311

Gene Structure 1424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00409020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTACCAGAAGATAGCAGACCCTCCACGACTCCTCAGCAACGCCGCCGGCAAAGCCTCCTGCTGCATCTTCCGAGTCCCGCAGAGCCTCCTCGAGATAAACGGCAAGGCTTACCAGCCCCACATCGTCTCCATCGGCCCCTACCACCGCGGCGAGCCCCGCGTCAGAATGATCGAGGAGCACAAGTGGCGCTACCTGGGCTCTCTGCTTTCAAGAACAGAGCCCAAAACTCTACAGCACTACTTGAAGTCCATAGAGCCATTGGAAGTTAGAGCCAGGGAGTGTTTCTCTGAGACCATCCATCTCAGCACTGATGAGTTCCTAGAAATGATGGTTGTTGATGGTTGCTTCTTAATTGAGTTGTTTCGAAAAGTTGGGCGTGTGGTTCGGTTTGTGCGTGATGATCCACTCATTAATATGTTTTGGATACTACCGTTTATGGTCAGGGATTTTCTTCGGCTTGAGAACCAAATGCCCTACTTCATTCTTGAGCACTTGTATGATCTGATAAACAAGGCCGAAGATCGTATGCATTTGCTTGACTTGTTGCGGTCAAGTGTGATGCCAGCGGGTTATGCAGAGCCACAAAGAAGAAACAGTACACCAACGCACATAATACATCCTGTGTCTAATCTTCGTCGCGCTGGTATCAAGCTCAATGTTAAGGAATTCGAAAGCTTCTTGGTGGTCAAATTCAAGAGTGGAGCAATTGAAATGCCTACCATCACAATCGACGATTTCATGTGCGCCTTCTTGTTGAACTGCGTGGCCTATGAGCAGTGCCACAAGTCATGCTCCAAACACATCGCCACTTATGCCACATTGCTCGATTGCCTCGTGAACAGTTACAAGGATGTCGAGTATTTGTGTGACAGAAACATAATGGAGAATTGCTATGGGAACGATGGGGAAATTGCTCGTTTCATTAACAATATGGGGAAGGATGTGGCTTTTGATTATGATAGGTGTTATCTGTCGAAATTGTTCAATGATGTTCATCAGTATTACAGCAATAGTTGGCATGTTCAATGGGCTAGCTTCAAGTATAGATACTTTGACACACCGTGGTTGTTTATTTCAGCCTTGGCTGCTTTGATTTTGCTAATACTCACAGTGCTGCAGACCTTATACTCTGCTTTAAGTTATTATCATCATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

386

Amino Acids

45.23

Weight (kDa)

7.23

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	23 - 173	1.7e-50	Plant protein of unknown function
DUF247	PF03140	173 - 370	2.2e-57	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36430
fragaria_vesca	FvH4_6g18050 FvH4_6g18060 FvH4_6g18063
malus_domestica	MD12G1019200.v1.1 MD14G1017100.v1.1
prunus_persica	Prupe.7G116000_v2.0.a1 Prupe.7G116100_v2.0.a1 Prupe.7G116200_v2.0.a1
pyrus_communis	pycom12g01590 pycom12g01610 pycom14g01490
rosa_chinensis	RchiOBHm_Chr3g0472321 RchiOBHm_Chr3g0472331 RchiOBHm_Chr3g0472341
rosa_laevigata	RLG00000024087 RLG00000024112
rosa_multiflora	Rmu_co8308659.1_g000001 Rmu_co8344587.1_g000001 Rmu_co8459455.1_g000001 Rmu_sc0000090.1_g000030 Rmu_sc0000627.1_g000002 Rmu_sc0002532.1_g000004 Rmu_sc0026961.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409010 Rroxscaffold_6G00409020 Rroxscaffold_6G00409030 Rroxscaffold_6G00409070 Rroxscaffold_6G00409360
rosa_rugosa	Rorug03G0123900 Rorug03G0124000 Rorug03G0124100 Rorug03G0124200
rosa_samantha	Rh3AG176300 Rh3AG176500 Rh3BG202000 Rh3BG202100 Rh3BG202200 Rh3DG173000 Rh3DG173200 Rh3DG173300
rosa_wichuraiana	Rw3G016490 Rw3G016500 Rw3G016740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	150, 162, 642
AciI	CCGC	7 cut(s)	45, 80, 148, 150, 160, 550, 569
AclWI	GGATC	1 cut(s)	398
AcsI	RAATTY	2 cut(s)	668, 692
AdeI	CACNNNGTG	1 cut(s)	1065
AfaI	GTAC	2 cut(s)	5, 601
AgsI	TTSAA	8 cut(s)	213, 247, 697, 713, 760, 988, 1028, 1042
AjnI	CCWGG	2 cut(s)	195, 275
AluBI	AGCT	3 cut(s)	655, 678, 1038
AluI	AGCT	3 cut(s)	655, 678, 1038
Alw21I	GWGCWC	2 cut(s)	183, 495
Alw26I	GTCTC	2 cut(s)	133, 287
AlwI	GGATC	1 cut(s)	398
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	3 cut(s)	136, 516, 768
ApeKI	GCWGC	3 cut(s)	63, 1088, 1117
ApoI	RAATTY	2 cut(s)	668, 692
AseI	ATTAAT	1 cut(s)	414
Asp700I	GAANNNNTTC	1 cut(s)	983
AspLEI	GCGC	3 cut(s)	192, 644, 749
AspS9I	GGNCC	1 cut(s)	137
AsuII	TTCGAA	2 cut(s)	367, 672
AsuNHI	GCTAGC	1 cut(s)	1034
AvaI	CYCGRG	1 cut(s)	92
BaeI	ACNNNNGTAYC	2 cut(s)	419, 452
BanII	GRGCYC	3 cut(s)	159, 203, 225
BarI	GAAGNNNNNNTAC	2 cut(s)	583, 615
BauI	CACGAG	1 cut(s)	836
Bbv12I	GWGCWC	2 cut(s)	183, 495
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	3 cut(s)	50, 1075, 1104
BccI	CCATC	7 cut(s)	140, 305, 309, 325, 335, 731, 899
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	2 cut(s)	197, 277
BciVI	GTATCC	1 cut(s)	420
BcoDI	GTCTC	2 cut(s)	133, 287
BfaI	CTAG	2 cut(s)	323, 1035
BfmI	CTRYAG	2 cut(s)	233, 1118
BfoI	RGCGCY	1 cut(s)	193
BfuI	GTATCC	1 cut(s)	420
BisI	GCNGC	5 cut(s)	45, 64, 151, 1089, 1118
BlsI	GCNGC	5 cut(s)	46, 65, 152, 1090, 1119
Bme1390I	CCNGG	2 cut(s)	197, 277
BmeT110I	CYCGRG	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	2 cut(s)	197, 277
BmsI	GCATC	2 cut(s)	75, 552
BmtI	GCTAGC	1 cut(s)	1038
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
Bpu10I	CCTNAGC	1 cut(s)	35
Bpu14I	TTCGAA	2 cut(s)	367, 672
BpuEI	CTTGAG	2 cut(s)	482, 509
BsaBI	GATNNNNATC	1 cut(s)	996
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	5 cut(s)	148, 196, 276, 1064, 1083
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 143, 170, 200
Bse118I	RCCGGY	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	821
Bse8I	GATNNNNATC	1 cut(s)	996
BseBI	CCWGG	2 cut(s)	197, 277
BseDI	CCNNGG	5 cut(s)	148, 196, 276, 1064, 1083
BseGI	GGATG	4 cut(s)	297, 619, 859, 949
BseJI	GATNNNNATC	1 cut(s)	996
BseMI	GCAATG	1 cut(s)	821
BseMII	CTCAG	3 cut(s)	49, 282, 319
BseRI	GAGGAG	3 cut(s)	23, 80, 191
BseXI	GCAGC	3 cut(s)	50, 1075, 1104
Bsh1236I	CGCG	3 cut(s)	150, 162, 642
BshFI	GGCC	3 cut(s)	138, 518, 770
BsiHKAI	GWGCWC	2 cut(s)	183, 495
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	62
BsmAI	GTCTC	2 cut(s)	133, 287
BsmBI	CGTCTC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	3 cut(s)	138, 518, 770
Bso31I	GGTCTC	1 cut(s)	287
BsoBI	CYCGRG	1 cut(s)	92
Bsp119I	TTCGAA	2 cut(s)	367, 672
Bsp1286I	GDGCHC	5 cut(s)	159, 183, 203, 225, 495
Bsp143I	GATC	4 cut(s)	171, 403, 502, 523
BspACI	CCGC	7 cut(s)	45, 80, 148, 150, 160, 550, 569
BspANI	GGCC	3 cut(s)	138, 518, 770
BspCNI	CTCAG	3 cut(s)	48, 283, 318
BspFNI	CGCG	3 cut(s)	150, 162, 642
BspLI	GGNNCC	1 cut(s)	139
BspMAI	CTGCAG	1 cut(s)	1122
BspOI	GCTAGC	1 cut(s)	1038
BspPI	GGATC	1 cut(s)	398
BspT104I	TTCGAA	2 cut(s)	367, 672
BspTNI	GGTCTC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	821
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	5 cut(s)	148, 196, 276, 1064, 1083
BssMI	GATC	4 cut(s)	171, 403, 502, 523
BssSI	CACGAG	1 cut(s)	836
BssT1I	CCWWGG	1 cut(s)	1083
Bst2BI	CACGAG	1 cut(s)	836
Bst2UI	CCWGG	2 cut(s)	197, 277
Bst4CI	ACNGT	5 cut(s)	435, 599, 845, 1065, 1114
BstBI	TTCGAA	2 cut(s)	367, 672
BstC8I	GCNNGC	4 cut(s)	49, 155, 567, 1036
BstDEI	CTNAG	3 cut(s)	35, 291, 305
BstDSI	CCRYGG	2 cut(s)	148, 1064
BstF5I	GGATG	4 cut(s)	297, 619, 859, 949
BstFNI	CGCG	3 cut(s)	150, 162, 642
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	3 cut(s)	192, 644, 749
BstKTI	GATC	4 cut(s)	174, 406, 505, 526
BstMAI	GTCTC	2 cut(s)	133, 287
BstMBI	GATC	4 cut(s)	171, 403, 502, 523
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 159, 187, 198, 575, 815, 1088
BstNI	CCWGG	2 cut(s)	197, 277
BstNSI	RCATGY	1 cut(s)	1025
BstSCI	CCNGG	2 cut(s)	195, 275
BstSFI	CTRYAG	2 cut(s)	233, 1118
BstUI	CGCG	3 cut(s)	150, 162, 642
BstV1I	GCAGC	3 cut(s)	50, 1075, 1104
BsuI	GTATCC	1 cut(s)	420
BsuRI	GGCC	3 cut(s)	138, 518, 770
BtgI	CCRYGG	2 cut(s)	148, 1064
BtgZI	GCGATG	1 cut(s)	790
BtsCI	GGATG	4 cut(s)	297, 619, 859, 949
BtsI	GCAGTG	1 cut(s)	785
BtsIMutI	CAGTG	3 cut(s)	309, 785, 1119
Cac8I	GCNNGC	4 cut(s)	49, 155, 567, 1036
CfoI	GCGC	3 cut(s)	192, 644, 749
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	137
Cfr42I	CCGCGG	1 cut(s)	151
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	2 cut(s)	4, 600
CviAII	CATG	3 cut(s)	742, 792, 1022
CviQI	GTAC	2 cut(s)	4, 600
DdeI	CTNAG	3 cut(s)	35, 291, 305
DpnI	GATC	4 cut(s)	173, 405, 504, 525
DpnII	GATC	4 cut(s)	171, 403, 502, 523
DraIII	CACNNNGTG	1 cut(s)	1065
Eco130I	CCWWGG	1 cut(s)	1083
Eco24I	GRGCYC	3 cut(s)	159, 203, 225
Eco31I	GGTCTC	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	92
EcoRI	GAATTC	1 cut(s)	668
EcoRII	CCWGG	2 cut(s)	195, 275
EcoT14I	CCWWGG	1 cut(s)	1083
EcoT22I	ATGCAT	1 cut(s)	534
EcoT38I	GRGCYC	3 cut(s)	159, 203, 225
ErhI	CCWWGG	1 cut(s)	1083
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	3 cut(s)	745, 795, 1025
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	3 cut(s)	741, 791, 1021
FauI	CCCGC	3 cut(s)	87, 167, 562
Fnu4HI	GCNGC	5 cut(s)	45, 64, 151, 1089, 1118
FokI	GGATG	4 cut(s)	284, 606, 866, 956
FriOI	GRGCYC	3 cut(s)	159, 203, 225
Fsp4HI	GCNGC	5 cut(s)	45, 64, 151, 1089, 1118
FspBI	CTAG	2 cut(s)	323, 1035
GlaI	GCGC	3 cut(s)	191, 643, 748
GluI	GCNGC	5 cut(s)	45, 64, 151, 1089, 1118
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	3 cut(s)	138, 518, 770
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	3 cut(s)	192, 644, 749
Hin1II	CATG	3 cut(s)	745, 795, 1025
Hin6I	GCGC	3 cut(s)	190, 642, 747
HinP1I	GCGC	3 cut(s)	190, 642, 747
HindIII	AAGCTT	1 cut(s)	676
HinfI	GANTC	2 cut(s)	30, 75
HpaII	CCGG	1 cut(s)	48
Hpy166II	GTNNAC	2 cut(s)	602, 841
Hpy188I	TCNGA	4 cut(s)	74, 167, 292, 507
Hpy188III	TCNNGA	5 cut(s)	94, 213, 488, 697, 838
Hpy8I	GTNNAC	2 cut(s)	602, 841
Hpy99I	CGWCG	2 cut(s)	642, 737
HpyAV	CCTTC	2 cut(s)	760, 934
HpyCH4III	ACNGT	5 cut(s)	435, 599, 845, 1065, 1114
HpyCH4V	TGCA	4 cut(s)	66, 532, 578, 1120
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 159, 187, 198, 575, 815, 1088
HpyF3I	CTNAG	3 cut(s)	35, 291, 305
Hsp92II	CATG	3 cut(s)	745, 795, 1025
HspAI	GCGC	3 cut(s)	190, 642, 747
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
KspI	CCGCGG	1 cut(s)	151
Kzo9I	GATC	4 cut(s)	171, 403, 502, 523
LmnI	GCTCC	3 cut(s)	178, 704, 800
Lsp1109I	GCAGC	3 cut(s)	50, 1075, 1104
LweI	GCATC	2 cut(s)	75, 552
MaeI	CTAG	2 cut(s)	323, 1035
MaeIII	GTNAC	2 cut(s)	845, 869
MalI	GATC	4 cut(s)	173, 405, 504, 525
MboI	GATC	4 cut(s)	171, 403, 502, 523
MboII	GAAGA	6 cut(s)	22, 61, 446, 533, 603, 626
MfeI	CAATTG	1 cut(s)	708
MhlI	GDGCHC	5 cut(s)	159, 183, 203, 225, 495
MluCI	AATT	7 cut(s)	354, 668, 692, 708, 889, 912, 980
MlyI	GAGTC	2 cut(s)	24, 84
MnlI	CCTC	7 cut(s)	33, 44, 67, 98, 101, 169, 845
Mph1103I	ATGCAT	1 cut(s)	534
MroNI	GCCGGC	1 cut(s)	47
MroXI	GAANNNNTTC	1 cut(s)	983
MseI	TTAA	5 cut(s)	353, 414, 663, 927, 1139
MslI	CAYNNNNRTG	2 cut(s)	416, 498
MspA1I	CMGCKG	2 cut(s)	150, 569
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	2 cut(s)	197, 277
MunI	CAATTG	1 cut(s)	708
MvaI	CCWGG	2 cut(s)	197, 277
MvnI	CGCG	3 cut(s)	150, 162, 642
MwoI	GCNNNNNNNGC	7 cut(s)	53, 159, 187, 198, 575, 815, 1088
NaeI	GCCGGC	1 cut(s)	49
NdeII	GATC	4 cut(s)	171, 403, 502, 523
NgoMIV	GCCGGC	1 cut(s)	47
NheI	GCTAGC	1 cut(s)	1034
NlaIII	CATG	3 cut(s)	745, 795, 1025
NlaIV	GGNNCC	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	869
NsiI	ATGCAT	1 cut(s)	534
NspI	RCATGY	1 cut(s)	1025
NspV	TTCGAA	2 cut(s)	367, 672
PaeR7I	CTCGAG	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	2 cut(s)	394, 834
PdiI	GCCGGC	1 cut(s)	49
PdmI	GAANNNNTTC	1 cut(s)	983
PkrI	GCNGC	5 cut(s)	46, 65, 152, 1090, 1119
PleI	GAGTC	2 cut(s)	24, 83
PpsI	GAGTC	2 cut(s)	24, 83
PshBI	ATTAAT	1 cut(s)	414
Psp6I	CCWGG	2 cut(s)	195, 275
PspGI	CCWGG	2 cut(s)	195, 275
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	1122
RsaI	GTAC	2 cut(s)	5, 601
RsaNI	GTAC	2 cut(s)	4, 600
RseI	CAYNNNNRTG	2 cut(s)	416, 498
SacII	CCGCGG	1 cut(s)	151
SaqAI	TTAA	5 cut(s)	353, 414, 663, 927, 1139
SatI	GCNGC	5 cut(s)	45, 64, 151, 1089, 1118
Sau3AI	GATC	4 cut(s)	171, 403, 502, 523
Sau96I	GGNCC	1 cut(s)	137
SchI	GAGTC	2 cut(s)	24, 84
ScrFI	CCNGG	2 cut(s)	197, 277
SduI	GDGCHC	5 cut(s)	159, 183, 203, 225, 495
SetI	ASST	6 cut(s)	198, 657, 680, 968, 1040, 1127
SfaNI	GCATC	2 cut(s)	75, 552
SfcI	CTRYAG	2 cut(s)	233, 1118
Sfr274I	CTCGAG	1 cut(s)	92
Sfr303I	CCGCGG	1 cut(s)	151
SfuI	TTCGAA	2 cut(s)	367, 672
SgrBI	CCGCGG	1 cut(s)	151
SlaI	CTCGAG	1 cut(s)	92
SmiMI	CAYNNNNRTG	2 cut(s)	416, 498
SmlI	CTYRAG	3 cut(s)	92, 461, 488
SmoI	CTYRAG	3 cut(s)	92, 461, 488
Sse9I	AATT	7 cut(s)	354, 668, 692, 708, 889, 912, 980
SsiI	CCGC	7 cut(s)	45, 80, 148, 150, 160, 550, 569
SspMI	CTAG	2 cut(s)	323, 1035
StyD4I	CCNGG	2 cut(s)	195, 275
StyI	CCWWGG	1 cut(s)	1083
TaaI	ACNGT	5 cut(s)	435, 599, 845, 1065, 1114
TaqI	TCGA	8 cut(s)	93, 174, 367, 672, 732, 828, 858, 977
TasI	AATT	7 cut(s)	354, 668, 692, 708, 889, 912, 980
TatI	WGTACW	1 cut(s)	599
TauI	GCSGC	2 cut(s)	47, 153
Tru1I	TTAA	5 cut(s)	353, 414, 663, 927, 1139
Tru9I	TTAA	5 cut(s)	353, 414, 663, 927, 1139
TscAI	CASTG	3 cut(s)	316, 785, 1119
TseFI	GTSAC	1 cut(s)	869
TseI	GCWGC	3 cut(s)	63, 1088, 1117
Tsp45I	GTSAC	1 cut(s)	869
TspDTI	ATGAA	4 cut(s)	472, 730, 913, 986
TspRI	CASTG	3 cut(s)	316, 785, 1119
VspI	ATTAAT	1 cut(s)	414
XapI	RAATTY	2 cut(s)	668, 692
XceI	RCATGY	1 cut(s)	1025
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XhoI	CTCGAG	1 cut(s)	92
XmnI	GAANNNNTTC	1 cut(s)	983
XspI	CTAG	2 cut(s)	323, 1035
Zsp2I	ATGCAT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.