FvH4_6g18063

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002063
Physical Location & Seq
Reverse (-)
11871295 .. 11873134
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18063.t1

Sequence Viewer

Length: 1341 bp
ATGGATACCAATCCAATTCAAGAAGAGCACAACCATGTTACCCCCATCTCCGAAATGAACAACGATCTTTTAGCTTCCATGTACAAGAAGATCGCAGAGCCTCCGAGACTTCTTAGCAATGCCGCTGGTAAAGCCTCCTGCTGCATCTTCCGAGTCCCGCAGAGCCTCCTCGAGATAAACGGCAAGTCGTACCAACCCCACATCGTCTCCATCGGCCCTTACCACCGCGGCGAGCCCCACCTCAGAATGATCGAGGAGCACAAGTGGCGCTACCTGGGTTCTCTGCTTTCAAGAACAGAGCCTAAAGGGTTGGCTCTCCAGCACTACTTGAAGTCCATAGAGCCAATGGAAGCTAGAGCCAGAGAGTGTTACTCTGAGACAATCCACCTTAGCTCTGATGAGTTCGTCGAGATGATGGTCCTTGATGGTTGCTTCTTGATCGAGTTGTTTCGAAAAAATGGCCGAGTGGTTCGGTTTGAGCGTGATGATCCACTCGTCAATATGTTCTGGGTAATTCCGTTTATGGTTAGAGATTTTCTTCGTCTTGAAAACCAAATCCCCTACTTTGTTCTTGAGCACTTGTATGATCTGATTACGAAAGCCGAAGATCGTAAAGATTCTGTGAAATCCTTGTCCTTGCTTGCTTTGGGATTCTTCAACAACCATATGCTGAGGCCTGACCCTGTCATAGAGAAGCTTCATAGTCTTACAGGTAAGCATTTGCTTGACTTGTTGCGGTTAAGTGTGATACCAGCGGGTTATGCAGAGCCACAAAGAAGCAGTACACCAACACACATAATACATTGTGTGTCTAAGCTTCGTCACGCTGGAATCAAGCTCAATGCTAAGGAATTCGAAAGCTTCTTGATGGTCAAATTTAAGCGTGGAGTGATCGAGATGCCTACCATCACAATCGACGATTTCATGAGCGCCTTCTTGTTGAACTGCGTCGCCTACGAGCAGTGCCACAAGTCGTGCTCCAAGCACATCACCACTTATGCCACATTGCTCGATTGCCTCGTGAACAGTTACAAGGATGTCGAGTACTTGTGTGACAGAAACATAATGGAGAATTGCTATGGGAACGATGGGGAAATTGCTCATTTCATCAACAATATGGGGAAGGATGTAGCTTTTGATTATGATAGGTGTTATCTATCGAAATTGTTCAATGATGTTCATGACTATTACCGGAATAGTTGGCATGTTACGTGGGCTAGTTTCAAGTACACCTACTTTGACACACCGTGGTCGTTTGTTTCGGCCTTAGCTGCTTTGATTTTGCTCATACTCACCGTGCTGCAGACCTTGTACTCCGTTCTATCTTTTTATAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

447

Amino Acids

51.71

Weight (kDa)

6.37

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 49 - 431 1.2e-123 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1332
AccII CGCG 1 cut(s) 228
AciI CCGC 6 cut(s) 123, 158, 226, 228, 736, 755
AclWI GGATC 1 cut(s) 482
AcoI YGGCCR 1 cut(s) 460
AcsI RAATTY 2 cut(s) 851, 875
AdeI CACNNNGTG 1 cut(s) 1248
AfaI GTAC 6 cut(s) 83, 191, 784, 1046, 1229, 1313
AgsI TTSAA 8 cut(s) 20, 291, 331, 548, 658, 943, 1171, 1225
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 9 cut(s) 74, 353, 393, 697, 817, 838, 861, 1133, 1271
AluI AGCT 9 cut(s) 74, 353, 393, 697, 817, 838, 861, 1133, 1271
Alw21I GWGCWC 4 cut(s) 30, 261, 579, 980
Alw26I GTCTC 3 cut(s) 100, 211, 371
AlwI GGATC 1 cut(s) 482
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 4 cut(s) 214, 460, 674, 1263
ApeKI GCWGC 3 cut(s) 141, 1271, 1300
ApoI RAATTY 2 cut(s) 851, 875
Asp700I GAANNNNTTC 1 cut(s) 1166
AspLEI GCGC 2 cut(s) 270, 932
AspS9I GGNCC 2 cut(s) 215, 418
AsuHPI GGTGA 2 cut(s) 982, 1285
AsuII TTCGAA 2 cut(s) 451, 855
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 1 cut(s) 418
BanII GRGCYC 1 cut(s) 237
BauI CACGAG 1 cut(s) 1019
Bbv12I GWGCWC 4 cut(s) 30, 261, 579, 980
BbvCI CCTCAGC 1 cut(s) 671
BbvI GCAGC 3 cut(s) 128, 1258, 1287
BccI CCATC 7 cut(s) 53, 218, 409, 419, 862, 914, 1082
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 275
BcoDI GTCTC 3 cut(s) 100, 211, 371
BfaI CTAG 2 cut(s) 354, 1218
BfmI CTRYAG 1 cut(s) 1301
BfoI RGCGCY 2 cut(s) 271, 933
BisI GCNGC 5 cut(s) 123, 142, 229, 1272, 1301
BlsI GCNGC 5 cut(s) 124, 143, 230, 1273, 1302
BmcAI AGTACT 1 cut(s) 1046
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 418
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 2 cut(s) 215, 418
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 2 cut(s) 153, 888
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpmI CTGGAG 1 cut(s) 302
Bpu10I CCTNAGC 4 cut(s) 389, 671, 846, 1267
Bpu14I TTCGAA 2 cut(s) 451, 855
BpuEI CTTGAG 1 cut(s) 593
BsaAI YACGTR 1 cut(s) 1212
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 3 cut(s) 226, 274, 1247
BsaWI WCCGGW 1 cut(s) 1191
BsaXI ACNNNNNCTCC 4 cut(s) 191, 221, 248, 278
Bse3DI GCAATG 2 cut(s) 124, 1004
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 3 cut(s) 226, 274, 1247
BseGI GGATG 2 cut(s) 1042, 1132
BseJI GATNNNNATC 1 cut(s) 9
BseMI GCAATG 2 cut(s) 124, 1004
BseMII CTCAG 3 cut(s) 256, 366, 662
BseRI GAGGAG 2 cut(s) 158, 269
BseXI GCAGC 3 cut(s) 128, 1258, 1287
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 4 cut(s) 216, 462, 676, 1265
BsiHKAI GWGCWC 4 cut(s) 30, 261, 579, 980
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 1 cut(s) 1192
BslFI GGGAC 1 cut(s) 140
BsmAI GTCTC 3 cut(s) 100, 211, 371
BsmBI CGTCTC 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 4 cut(s) 216, 462, 676, 1265
BsoBI CYCGRG 1 cut(s) 170
Bsp119I TTCGAA 2 cut(s) 451, 855
Bsp1286I GDGCHC 5 cut(s) 30, 237, 261, 579, 980
Bsp1407I TGTACA 1 cut(s) 81
Bsp143I GATC 8 cut(s) 64, 90, 249, 438, 487, 586, 607, 891
BspACI CCGC 6 cut(s) 123, 158, 226, 228, 736, 755
BspANI GGCC 4 cut(s) 216, 462, 676, 1265
BspCNI CTCAG 3 cut(s) 255, 367, 663
BspFNI CGCG 1 cut(s) 228
BspHI TCATGA 2 cut(s) 924, 1180
BspMAI CTGCAG 1 cut(s) 1305
BspPI GGATC 1 cut(s) 482
BspQI GCTCTTC 1 cut(s) 18
BspT104I TTCGAA 2 cut(s) 451, 855
BsrDI GCAATG 2 cut(s) 124, 1004
BsrGI TGTACA 1 cut(s) 81
BssECI CCNNGG 3 cut(s) 226, 274, 1247
BssMI GATC 8 cut(s) 64, 90, 249, 438, 487, 586, 607, 891
BssSI CACGAG 1 cut(s) 1019
Bst2BI CACGAG 1 cut(s) 1019
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 3 cut(s) 1028, 1248, 1297
Bst6I CTCTTC 1 cut(s) 18
BstAUI TGTACA 1 cut(s) 81
BstBAI YACGTR 1 cut(s) 1212
BstBI TTCGAA 2 cut(s) 451, 855
BstC8I GCNNGC 2 cut(s) 233, 642
BstDEI CTNAG 8 cut(s) 113, 242, 375, 389, 671, 813, 846, 1267
BstDSI CCRYGG 2 cut(s) 226, 1247
BstF5I GGATG 2 cut(s) 1042, 1132
BstFNI CGCG 1 cut(s) 228
BstH2I RGCGCY 2 cut(s) 271, 933
BstHHI GCGC 2 cut(s) 270, 932
BstKTI GATC 8 cut(s) 67, 93, 252, 441, 490, 589, 610, 894
BstMAI GTCTC 3 cut(s) 100, 211, 371
BstMBI GATC 8 cut(s) 64, 90, 249, 438, 487, 586, 607, 891
BstMWI GCNNNNNNNGC 4 cut(s) 131, 265, 761, 1271
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 1 cut(s) 1208
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 1 cut(s) 1301
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 3 cut(s) 128, 1258, 1287
BsuRI GGCC 4 cut(s) 216, 462, 676, 1265
BtgI CCRYGG 2 cut(s) 226, 1247
BtsCI GGATG 2 cut(s) 1042, 1132
BtsI GCAGTG 1 cut(s) 968
BtsIMutI CAGTG 1 cut(s) 968
Cac8I GCNNGC 2 cut(s) 233, 642
CciI TCATGA 2 cut(s) 924, 1180
CfoI GCGC 2 cut(s) 270, 932
Cfr13I GGNCC 2 cut(s) 215, 418
Cfr42I CCGCGG 1 cut(s) 229
CseI GACGC 1 cut(s) 937
Csp6I GTAC 6 cut(s) 82, 190, 783, 1045, 1228, 1312
CviAII CATG 5 cut(s) 35, 79, 925, 1181, 1205
CviQI GTAC 6 cut(s) 82, 190, 783, 1045, 1228, 1312
DdeI CTNAG 8 cut(s) 113, 242, 375, 389, 671, 813, 846, 1267
DpnI GATC 8 cut(s) 66, 92, 251, 440, 489, 588, 609, 893
DpnII GATC 8 cut(s) 64, 90, 249, 438, 487, 586, 607, 891
DraIII CACNNNGTG 1 cut(s) 1248
EaeI YGGCCR 1 cut(s) 460
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco147I AGGCCT 1 cut(s) 676
Eco24I GRGCYC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 418
Eco88I CYCGRG 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 851
EcoRII CCWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 237
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 5 cut(s) 38, 82, 928, 1184, 1208
FaqI GGGAC 1 cut(s) 140
FatI CATG 5 cut(s) 34, 78, 924, 1180, 1204
FauI CCCGC 2 cut(s) 165, 748
FauNDI CATATG 1 cut(s) 666
Fnu4HI GCNGC 5 cut(s) 123, 142, 229, 1272, 1301
FokI GGATG 2 cut(s) 1049, 1139
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 5 cut(s) 123, 142, 229, 1272, 1301
FspBI CTAG 2 cut(s) 354, 1218
GlaI GCGC 2 cut(s) 269, 931
GluI GCNGC 5 cut(s) 123, 142, 229, 1272, 1301
GsuI CTGGAG 1 cut(s) 302
HaeII RGCGCY 2 cut(s) 271, 933
HaeIII GGCC 4 cut(s) 216, 462, 676, 1265
HapII CCGG 1 cut(s) 1192
HgaI GACGC 1 cut(s) 937
HhaI GCGC 2 cut(s) 270, 932
Hin1II CATG 5 cut(s) 38, 82, 928, 1184, 1208
Hin6I GCGC 2 cut(s) 268, 930
HinP1I GCGC 2 cut(s) 268, 930
HindIII AAGCTT 3 cut(s) 695, 815, 859
HinfI GANTC 4 cut(s) 153, 617, 651, 831
HpaII CCGG 1 cut(s) 1192
HphI GGTGA 2 cut(s) 982, 1285
Hpy166II GTNNAC 3 cut(s) 785, 1024, 1230
Hpy188I TCNGA 7 cut(s) 52, 105, 152, 245, 376, 397, 591
Hpy8I GTNNAC 3 cut(s) 785, 1024, 1230
Hpy99I CGWCG 3 cut(s) 410, 920, 953
HpyAV CCTTC 2 cut(s) 943, 1117
HpyCH4III ACNGT 3 cut(s) 1028, 1248, 1297
HpyCH4IV ACGT 1 cut(s) 1211
HpyCH4V TGCA 3 cut(s) 144, 764, 1303
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 265, 761, 1271
HpyF3I CTNAG 8 cut(s) 113, 242, 375, 389, 671, 813, 846, 1267
HpySE526I ACGT 1 cut(s) 1211
Hsp92II CATG 5 cut(s) 38, 82, 928, 1184, 1208
HspAI GCGC 2 cut(s) 268, 930
KspI CCGCGG 1 cut(s) 229
Kzo9I GATC 8 cut(s) 64, 90, 249, 438, 487, 586, 607, 891
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 256, 983
Lsp1109I GCAGC 3 cut(s) 128, 1258, 1287
LweI GCATC 2 cut(s) 153, 888
MaeI CTAG 2 cut(s) 354, 1218
MaeII ACGT 1 cut(s) 1211
MaeIII GTNAC 6 cut(s) 37, 368, 821, 1028, 1052, 1207
MalI GATC 8 cut(s) 66, 92, 251, 440, 489, 588, 609, 893
MboI GATC 8 cut(s) 64, 90, 249, 438, 487, 586, 607, 891
MboII GAAGA 6 cut(s) 35, 100, 139, 530, 617, 646
MhlI GDGCHC 5 cut(s) 30, 237, 261, 579, 980
MluCI AATT 8 cut(s) 15, 513, 851, 875, 1072, 1095, 1163, 1333
MlyI GAGTC 1 cut(s) 162
MnlI CCTC 8 cut(s) 111, 145, 176, 179, 247, 251, 666, 1028
MroXI GAANNNNTTC 1 cut(s) 1166
MseI TTAA 2 cut(s) 740, 879
MslI CAYNNNNRTG 2 cut(s) 33, 582
MspA1I CMGCKG 3 cut(s) 125, 228, 755
MspI CCGG 1 cut(s) 1192
MspR9I CCNGG 1 cut(s) 275
MvaI CCWGG 1 cut(s) 275
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 4 cut(s) 131, 265, 761, 1271
NdeI CATATG 1 cut(s) 666
NdeII GATC 8 cut(s) 64, 90, 249, 438, 487, 586, 607, 891
NlaIII CATG 5 cut(s) 38, 82, 928, 1184, 1208
NmeAIII GCCGAG 1 cut(s) 488
NmuCI GTSAC 2 cut(s) 821, 1052
NspI RCATGY 1 cut(s) 1208
NspV TTCGAA 2 cut(s) 451, 855
PaeR7I CTCGAG 1 cut(s) 170
PagI TCATGA 2 cut(s) 924, 1180
PceI AGGCCT 1 cut(s) 676
PciSI GCTCTTC 1 cut(s) 18
PcsI WCGNNNNNNNCGW 2 cut(s) 478, 1017
PdmI GAANNNNTTC 1 cut(s) 1166
PfeI GAWTC 3 cut(s) 617, 651, 831
PflFI GACNNNGTC 1 cut(s) 683
PkrI GCNGC 5 cut(s) 124, 143, 230, 1273, 1302
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
Ppu21I YACGTR 1 cut(s) 1212
PsiI TTATAA 1 cut(s) 1332
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspPI GGNCC 2 cut(s) 215, 418
PstI CTGCAG 1 cut(s) 1305
PsyI GACNNNGTC 1 cut(s) 683
RsaI GTAC 6 cut(s) 83, 191, 784, 1046, 1229, 1313
RsaNI GTAC 6 cut(s) 82, 190, 783, 1045, 1228, 1312
RseI CAYNNNNRTG 2 cut(s) 33, 582
SacII CCGCGG 1 cut(s) 229
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 2 cut(s) 740, 879
SatI GCNGC 5 cut(s) 123, 142, 229, 1272, 1301
Sau3AI GATC 8 cut(s) 64, 90, 249, 438, 487, 586, 607, 891
Sau96I GGNCC 2 cut(s) 215, 418
ScaI AGTACT 1 cut(s) 1046
SchI GAGTC 1 cut(s) 162
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 5 cut(s) 30, 237, 261, 579, 980
SfaNI GCATC 2 cut(s) 153, 888
SfcI CTRYAG 1 cut(s) 1301
Sfr274I CTCGAG 1 cut(s) 170
Sfr303I CCGCGG 1 cut(s) 229
SfuI TTCGAA 2 cut(s) 451, 855
SgrBI CCGCGG 1 cut(s) 229
SinI GGWCC 1 cut(s) 418
SlaI CTCGAG 1 cut(s) 170
SmiMI CAYNNNNRTG 2 cut(s) 33, 582
SmlI CTYRAG 2 cut(s) 170, 572
SmoI CTYRAG 2 cut(s) 170, 572
Sse9I AATT 8 cut(s) 15, 513, 851, 875, 1072, 1095, 1163, 1333
SseBI AGGCCT 1 cut(s) 676
SsiI CCGC 6 cut(s) 123, 158, 226, 228, 736, 755
SspMI CTAG 2 cut(s) 354, 1218
StuI AGGCCT 1 cut(s) 676
StyD4I CCNGG 1 cut(s) 273
TaaI ACNGT 3 cut(s) 1028, 1248, 1297
TaiI ACGT 1 cut(s) 1214
TasI AATT 8 cut(s) 15, 513, 851, 875, 1072, 1095, 1163, 1333
TatI WGTACW 5 cut(s) 81, 782, 1044, 1227, 1311
TauI GCSGC 2 cut(s) 125, 231
TfiI GAWTC 3 cut(s) 617, 651, 831
Tru1I TTAA 2 cut(s) 740, 879
Tru9I TTAA 2 cut(s) 740, 879
TscAI CASTG 1 cut(s) 968
TseFI GTSAC 2 cut(s) 821, 1052
TseI GCWGC 3 cut(s) 141, 1271, 1300
Tsp45I GTSAC 2 cut(s) 821, 1052
TspDTI ATGAA 5 cut(s) 71, 689, 913, 1096, 1169
TspGWI ACGGA 2 cut(s) 507, 1306
TspRI CASTG 1 cut(s) 968
Tth111I GACNNNGTC 1 cut(s) 683
VpaK11BI GGWCC 1 cut(s) 418
XapI RAATTY 2 cut(s) 851, 875
XceI RCATGY 1 cut(s) 1208
XcmI CCANNNNNNNNNTGG 1 cut(s) 343
XhoI CTCGAG 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 1166
XspI CTAG 2 cut(s) 354, 1218
ZrmI AGTACT 1 cut(s) 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.