Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002063

Physical Location & Seq

Genomic Coordinates Forward (+)

31556675 .. 31557148

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00409030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGTTCAGAAACCTGTGCATGCCAAAATTCAGGGGTGAATCAACTTCCTAGACCCACAAGGCCGATAAGCAGCTACGGTATTGCTACGATGTCTTCATTGCCTTCATCTTTTCCTCATCCCACAAGACCAGTTAGCATAGACCAATACAATGCTCAACAAGTTGGTTATGTTGAAACTTTTGTCCATGGGGCACAACCAACTGAAGAGGAAGATAGGGAAGGTCTTGATGGATTGCTTGGGTTCATGTCAGAGCTTATTGAAAAAGTTCCTGCAAAACTAGAACACATATTACTTGATAAATATATGGATCATAGAGAAAATGAAGGTCCTGTCATTGTGGAAAGGGGTACTACTACTACTAGTCGCGGTCTTCAAGGAAATGGGGAATCATCACCAAAGCTTGAGCGCTTCAAAATCCGAACTGTGGATTTTGGGGATGATGTCGAGGAGGAAGAGAACGTGAAGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.47

Weight (kDa)

4.85

Isoelectric Point (pI)

61.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36430
fragaria_vesca	FvH4_6g18050 FvH4_6g18060 FvH4_6g18063
malus_domestica	MD12G1019200.v1.1 MD14G1017100.v1.1
prunus_persica	Prupe.7G116000_v2.0.a1 Prupe.7G116100_v2.0.a1 Prupe.7G116200_v2.0.a1
pyrus_communis	pycom12g01590 pycom12g01610 pycom14g01490
rosa_chinensis	RchiOBHm_Chr3g0472321 RchiOBHm_Chr3g0472331 RchiOBHm_Chr3g0472341
rosa_laevigata	RLG00000024087 RLG00000024112
rosa_multiflora	Rmu_co8308659.1_g000001 Rmu_co8344587.1_g000001 Rmu_co8459455.1_g000001 Rmu_sc0000090.1_g000030 Rmu_sc0000627.1_g000002 Rmu_sc0002532.1_g000004 Rmu_sc0026961.1_g000001
rosa_roxburghii	Rroxscaffold_6G00409010 Rroxscaffold_6G00409020 Rroxscaffold_6G00409030 Rroxscaffold_6G00409070 Rroxscaffold_6G00409360
rosa_rugosa	Rorug03G0123900 Rorug03G0124000 Rorug03G0124100 Rorug03G0124200
rosa_samantha	Rh3AG176300 Rh3AG176500 Rh3BG202000 Rh3BG202100 Rh3BG202200 Rh3DG173000 Rh3DG173200 Rh3DG173300
rosa_wichuraiana	Rw3G016490 Rw3G016500 Rw3G016740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	369
AciI	CCGC	1 cut(s)	369
AclWI	GGATC	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	1 cut(s)	352
AfeI	AGCGCT	1 cut(s)	410
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	4 cut(s)	176, 263, 377, 415
AhlI	ACTAGT	1 cut(s)	362
AluBI	AGCT	3 cut(s)	75, 256, 403
AluI	AGCT	3 cut(s)	75, 256, 403
AlwI	GGATC	1 cut(s)	318
Aor51HI	AGCGCT	1 cut(s)	410
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	1 cut(s)	72
ApoI	RAATTY	1 cut(s)	28
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	329
AsuHPI	GGTGA	2 cut(s)	49, 387
AvaII	GGWCC	1 cut(s)	329
BaeGI	GKGCMC	1 cut(s)	196
BbsI	GAAGAC	2 cut(s)	87, 365
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	1 cut(s)	224
BcuI	ACTAGT	1 cut(s)	362
BfaI	CTAG	3 cut(s)	51, 281, 363
BfoI	RGCGCY	1 cut(s)	412
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
BpiI	GAAGAC	2 cut(s)	87, 365
BpuEI	CTTGAG	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse1I	ACTGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	118, 445
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	464
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	427
BsnI	GGCC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	310
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	1 cut(s)	369
BspANI	GGCC	1 cut(s)	64
BspFNI	CGCG	1 cut(s)	369
BspPI	GGATC	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	1 cut(s)	310
BssT1I	CCWWGG	1 cut(s)	187
Bst4CI	ACNGT	2 cut(s)	80, 427
Bst6I	CTCTTC	2 cut(s)	201, 450
BstC8I	GCNNGC	1 cut(s)	22
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	118, 445
BstFNI	CGCG	1 cut(s)	369
BstH2I	RGCGCY	1 cut(s)	412
BstHHI	GCGC	1 cut(s)	411
BstKTI	GATC	1 cut(s)	313
BstMBI	GATC	1 cut(s)	310
BstNSI	RCATGY	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	196
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	84
BstV2I	GAAGAC	2 cut(s)	87, 365
BsuRI	GGCC	1 cut(s)	64
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	118, 445
Cac8I	GCNNGC	1 cut(s)	22
CfoI	GCGC	1 cut(s)	411
Cfr13I	GGNCC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	3 cut(s)	21, 188, 247
CviJI	RGCY	4 cut(s)	64, 75, 256, 403
CviKI_1	RGCY	4 cut(s)	64, 75, 256, 403
CviQI	GTAC	1 cut(s)	351
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eam1104I	CTCTTC	2 cut(s)	201, 450
EarI	CTCTTC	2 cut(s)	201, 450
Eco130I	CCWWGG	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	329
Eco47III	AGCGCT	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	329
EcoT14I	CCWWGG	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	3 cut(s)	24, 191, 250
FaiI	YATR	9 cut(s)	22, 140, 171, 189, 248, 290, 306, 308, 315
FatI	CATG	3 cut(s)	20, 187, 246
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	2 cut(s)	105, 452
Fsp4HI	GCNGC	1 cut(s)	73
FspBI	CTAG	3 cut(s)	51, 281, 363
GlaI	GCGC	1 cut(s)	410
GluI	GCNGC	1 cut(s)	73
HaeII	RGCGCY	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	411
Hin1II	CATG	3 cut(s)	24, 191, 250
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	2 cut(s)	40, 389
HphI	GGTGA	2 cut(s)	49, 387
Hpy188I	TCNGA	3 cut(s)	10, 253, 422
Hpy188III	TCNNGA	1 cut(s)	227
HpyAV	CCTTC	3 cut(s)	114, 215, 320
HpyCH4III	ACNGT	2 cut(s)	80, 427
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	2 cut(s)	20, 275
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	3 cut(s)	24, 191, 250
HspAI	GCGC	1 cut(s)	409
Kzo9I	GATC	1 cut(s)	310
LpnPI	CCDG	5 cut(s)	18, 28, 144, 285, 345
Lsp1109I	GCAGC	1 cut(s)	84
MaeI	CTAG	3 cut(s)	51, 281, 363
MaeII	ACGT	1 cut(s)	462
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	5 cut(s)	87, 218, 224, 365, 467
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	1 cut(s)	28
MnlI	CCTC	4 cut(s)	126, 202, 442, 445
MroXI	GAANNNNTTC	1 cut(s)	267
MvnI	CGCG	1 cut(s)	369
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	3 cut(s)	24, 191, 250
NspI	RCATGY	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	40, 389
PkrI	GCNGC	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	329
PspPI	GGNCC	1 cut(s)	329
PspPPI	RGGWCCY	1 cut(s)	329
PsrI	GAACNNNNNNTAC	2 cut(s)	276, 308
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	7 cut(s)	17, 77, 226, 258, 331, 405, 465
SinI	GGWCC	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SpeI	ACTAGT	1 cut(s)	362
SphI	GCATGC	1 cut(s)	24
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	1 cut(s)	369
SspMI	CTAG	3 cut(s)	51, 281, 363
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	80, 427
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	1 cut(s)	447
TasI	AATT	1 cut(s)	28
TfiI	GAWTC	2 cut(s)	40, 389
TseI	GCWGC	1 cut(s)	72
TspDTI	ATGAA	4 cut(s)	87, 96, 235, 339
VpaK11BI	GGWCC	1 cut(s)	329
XapI	RAATTY	1 cut(s)	28
XceI	RCATGY	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	3 cut(s)	51, 281, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.