Rw3G016740

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002063
Physical Location & Seq
Reverse (-)
17911636 .. 17913116
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G016740.1

Sequence Viewer

Length: 1338 bp
ATGGATACCAATCCAGTTCAAGAAGAACACAACCATGTCACCCCCATCTCCGGAATGAACAATGATCGCCTAGCTTCCATGTACCAGAAGATCGCAGACCCTCCACAACTCCTCAGCAACGCTGCCGGCAAAGCCTCCTGTTGCATCTTCCGAGTCCCGCAGAACCTTGTCGAGATAAACGGCAAGTCGTACCAGCCCCACATCGTCTCCATCGGTCCCTTCCACCGCGGCGAGCCCCACCTCAGAATGATCGAGGAGCACAAGTGGCGCTACCTTGGCTCTCTGCTTTCAAGAACAGAGCCCAAAGGGTTGACTCTCCAGCACTACTTGAAGTCCATAGAGCCAATGGAAGCTAGAGCCAGAGAGTGTTACTCTGAAACAATCCACCTTAGCAGTGATGAGTTCGTCGAAATGATGGTTGTTGATGGTTGCTTCTTAATCGAGATGTTTCGAAAATATGGCCGTGTGGTTCGGTTTGAGAGCGATGATCCACTCATCAATATGTTCTGGATACTTCCGTTTATGGTTAGAGATTTTCTTCGTCTTGAGAACCAAATCCCCTACTTTATACTTGAGCATTTGTATGATCTAATAACCAAGTCAGAAGATCGTCAAGACTCTGTGAAGTCTTTGTCCTTGCTTGCTTTGGACTTCTTCAACAACCATATGCTGAGGCCGCAAGAAGTCATTGCAAAGCTGCATAATCTTTCAGGTACGCATTTGCTTGACTTACTCCGGTCAAGTGTGATACCAGCTGACCTTGTTGAACCAGGACGCAGGAATTACACCCCCATTATACGTTGTGTTTCAACGCTTCGTCGAGCTGGAATCACGCTCAATCCTACTAGAGAATACGAAAGCTTCTTGGAGATCAAGTTCAACCGTGGAGTTATCGAAATGCCTCCAATCACCATAGACGATTTCATGAGCTCGTTCTTGTTAAACTGTGTGGCCTATGAGCAATGCCGCAAGTCATGCTCTAAACACATCACCACTTACACAATCTGGCTGGATTGCCTAGTGAATACTTACAAGGATGTCCAGTATTTGTCTGACATAAACATAATCGACAATTGGTTCGGAAACGATGAAGAGGTTGCTCTTTTTATTAACAATTTGGGGAAGGATGTGGCTGTTGATATTGAGAGATGTCATCTGTCGAAATTGTTCAAAGATGTACATGATTATTACAGATATAGTTGGCATGTTCAATGGGCAGGCTTCAAGTACACTTACTTTCCTGATCCATGGTCGTTTCTTTCGGCTTTTGCTGTGTTGATTTTCTTTTTTACCTTGCTGCAGACCTTATACACTGTTTTAAGTTATTATCATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

445

Amino Acids

52.07

Weight (kDa)

5.94

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 49 - 429 1.2e-117 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 228
AccIII TCCGGA 1 cut(s) 50
AciI CCGC 5 cut(s) 158, 226, 228, 677, 967
AclWI GGATC 2 cut(s) 482, 1238
AcoI YGGCCR 1 cut(s) 460
AfaI GTAC 5 cut(s) 83, 191, 715, 1179, 1229
AfiI CCNNNNNNNGG 1 cut(s) 50
AjnI CCWGG 1 cut(s) 769
AloI GAACNNNNNNTCC 2 cut(s) 860, 892
AluBI AGCT 7 cut(s) 74, 353, 697, 755, 824, 861, 930
AluI AGCT 7 cut(s) 74, 353, 697, 755, 824, 861, 930
Alw21I GWGCWC 2 cut(s) 261, 932
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 2 cut(s) 482, 1238
Aor13HI TCCGGA 1 cut(s) 50
AoxI GGCC 3 cut(s) 460, 674, 951
ApeKI GCWGC 3 cut(s) 122, 697, 1297
ArsI GACNNNNNNTTYG 2 cut(s) 1061, 1093
Asp700I GAANNNNTTC 1 cut(s) 1166
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 3 cut(s) 31, 901, 982
AsuII TTCGAA 1 cut(s) 451
AvaII GGWCC 1 cut(s) 215
BaeI ACNNNNGTAYC 2 cut(s) 503, 536
BanII GRGCYC 3 cut(s) 237, 303, 932
Bbv12I GWGCWC 2 cut(s) 261, 932
BbvCI CCTCAGC 2 cut(s) 113, 671
BbvI GCAGC 3 cut(s) 109, 684, 1284
BccI CCATC 4 cut(s) 53, 218, 409, 419
BceAI ACGGC 2 cut(s) 196, 447
BciT130I CCWGG 1 cut(s) 771
BciVI GTATCC 1 cut(s) 504
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 4 cut(s) 71, 354, 846, 1019
BfmI CTRYAG 1 cut(s) 1298
BfoI RGCGCY 1 cut(s) 271
BfuI GTATCC 1 cut(s) 504
BisI GCNGC 6 cut(s) 123, 229, 677, 698, 967, 1298
BlsI GCNGC 6 cut(s) 124, 230, 678, 699, 968, 1299
Bme1390I CCNGG 1 cut(s) 771
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 771
BmsI GCATC 1 cut(s) 153
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpmI CTGGAG 1 cut(s) 302
Bpu10I CCTNAGC 3 cut(s) 113, 389, 671
Bpu14I TTCGAA 1 cut(s) 451
BpuEI CTTGAG 2 cut(s) 566, 593
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 4 cut(s) 226, 274, 883, 1247
BsaWI WCCGGW 2 cut(s) 50, 735
BsaXI ACNNNNNCTCC 6 cut(s) 191, 221, 248, 278, 860, 890
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 2 cut(s) 14, 1042
Bse3DI GCAATG 2 cut(s) 687, 968
Bse8I GATNNNNATC 1 cut(s) 9
BseAI TCCGGA 1 cut(s) 50
BseBI CCWGG 1 cut(s) 771
BseDI CCNNGG 4 cut(s) 226, 274, 883, 1247
BseGI GGATG 2 cut(s) 1042, 1132
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMI GCAATG 2 cut(s) 687, 968
BseMII CTCAG 3 cut(s) 127, 256, 662
BseNI ACTGG 2 cut(s) 14, 1042
BseRI GAGGAG 2 cut(s) 101, 269
BseXI GCAGC 3 cut(s) 109, 684, 1284
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 3 cut(s) 462, 676, 953
BsiHKAI GWGCWC 2 cut(s) 261, 932
BsiSI CCGG 3 cut(s) 51, 126, 736
BslFI GGGAC 2 cut(s) 140, 201
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 211
BsmBI CGTCTC 1 cut(s) 211
BsmFI GGGAC 2 cut(s) 140, 201
BsnI GGCC 3 cut(s) 462, 676, 953
Bsp119I TTCGAA 1 cut(s) 451
Bsp1286I GDGCHC 4 cut(s) 237, 261, 303, 932
Bsp13I TCCGGA 1 cut(s) 50
Bsp1407I TGTACA 1 cut(s) 1177
Bsp143I GATC 8 cut(s) 64, 90, 249, 487, 586, 607, 870, 1243
Bsp19I CCATGG 1 cut(s) 1247
BspACI CCGC 5 cut(s) 158, 226, 228, 677, 967
BspANI GGCC 3 cut(s) 462, 676, 953
BspCNI CTCAG 3 cut(s) 126, 255, 663
BspEI TCCGGA 1 cut(s) 50
BspFNI CGCG 1 cut(s) 228
BspHI TCATGA 1 cut(s) 924
BspLI GGNNCC 1 cut(s) 217
BspMAI CTGCAG 1 cut(s) 1302
BspPI GGATC 2 cut(s) 482, 1238
BspT104I TTCGAA 1 cut(s) 451
BsrDI GCAATG 2 cut(s) 687, 968
BsrFI RCCGGY 1 cut(s) 125
BsrGI TGTACA 1 cut(s) 1177
BsrI ACTGG 2 cut(s) 14, 1042
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 4 cut(s) 226, 274, 883, 1247
BssMI GATC 8 cut(s) 64, 90, 249, 487, 586, 607, 870, 1243
BssT1I CCWWGG 2 cut(s) 274, 1247
Bst2UI CCWGG 1 cut(s) 771
Bst4CI ACNGT 3 cut(s) 884, 947, 1315
Bst6I CTCTTC 1 cut(s) 1086
BstAPI GCANNNNNTGC 1 cut(s) 975
BstAUI TGTACA 1 cut(s) 1177
BstBI TTCGAA 1 cut(s) 451
BstC8I GCNNGC 4 cut(s) 127, 233, 642, 1219
BstDEI CTNAG 4 cut(s) 113, 242, 389, 671
BstDSI CCRYGG 3 cut(s) 226, 883, 1247
BstF5I GGATG 2 cut(s) 1042, 1132
BstFNI CGCG 1 cut(s) 228
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 8 cut(s) 67, 93, 252, 490, 589, 610, 873, 1246
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 8 cut(s) 64, 90, 249, 487, 586, 607, 870, 1243
BstMWI GCNNNNNNNGC 5 cut(s) 131, 265, 276, 676, 975
BstNI CCWGG 1 cut(s) 771
BstNSI RCATGY 1 cut(s) 1208
BstSCI CCNGG 1 cut(s) 769
BstSFI CTRYAG 1 cut(s) 1298
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 3 cut(s) 109, 684, 1284
BsuI GTATCC 1 cut(s) 504
BsuRI GGCC 3 cut(s) 462, 676, 953
BtgI CCRYGG 3 cut(s) 226, 883, 1247
BtgZI GCGATG 1 cut(s) 498
BtsCI GGATG 2 cut(s) 1042, 1132
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 2 cut(s) 400, 1311
Cac8I GCNNGC 4 cut(s) 127, 233, 642, 1219
CciI TCATGA 1 cut(s) 924
CfoI GCGC 1 cut(s) 270
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 215
Cfr42I CCGCGG 1 cut(s) 229
CseI GACGC 1 cut(s) 783
Csp6I GTAC 5 cut(s) 82, 190, 714, 1178, 1228
CviAII CATG 7 cut(s) 35, 79, 925, 975, 1181, 1205, 1248
CviQI GTAC 5 cut(s) 82, 190, 714, 1178, 1228
DdeI CTNAG 4 cut(s) 113, 242, 389, 671
DpnI GATC 8 cut(s) 66, 92, 251, 489, 588, 609, 872, 1245
DpnII GATC 8 cut(s) 64, 90, 249, 487, 586, 607, 870, 1243
EaeI YGGCCR 1 cut(s) 460
Eam1104I CTCTTC 1 cut(s) 1086
EarI CTCTTC 1 cut(s) 1086
Ecl136II GAGCTC 1 cut(s) 930
Eco130I CCWWGG 2 cut(s) 274, 1247
Eco24I GRGCYC 3 cut(s) 237, 303, 932
Eco47I GGWCC 1 cut(s) 215
Eco53kI GAGCTC 1 cut(s) 930
EcoICRI GAGCTC 1 cut(s) 930
EcoRII CCWGG 1 cut(s) 769
EcoT14I CCWWGG 2 cut(s) 274, 1247
EcoT38I GRGCYC 3 cut(s) 237, 303, 932
ErhI CCWWGG 2 cut(s) 274, 1247
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 7 cut(s) 38, 82, 928, 978, 1184, 1208, 1251
FaqI GGGAC 2 cut(s) 140, 201
FatI CATG 7 cut(s) 34, 78, 924, 974, 1180, 1204, 1247
FauI CCCGC 1 cut(s) 165
FauNDI CATATG 1 cut(s) 666
Fnu4HI GCNGC 6 cut(s) 123, 229, 677, 698, 967, 1298
FokI GGATG 2 cut(s) 1049, 1139
FriOI GRGCYC 3 cut(s) 237, 303, 932
Fsp4HI GCNGC 6 cut(s) 123, 229, 677, 698, 967, 1298
FspBI CTAG 4 cut(s) 71, 354, 846, 1019
GlaI GCGC 1 cut(s) 269
GluI GCNGC 6 cut(s) 123, 229, 677, 698, 967, 1298
GsuI CTGGAG 1 cut(s) 302
HaeII RGCGCY 1 cut(s) 271
HaeIII GGCC 3 cut(s) 462, 676, 953
HapII CCGG 3 cut(s) 51, 126, 736
HgaI GACGC 1 cut(s) 783
HhaI GCGC 1 cut(s) 270
Hin1II CATG 7 cut(s) 38, 82, 928, 978, 1184, 1208, 1251
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 859
HinfI GANTC 4 cut(s) 153, 313, 617, 828
HpaII CCGG 3 cut(s) 51, 126, 736
HphI GGTGA 3 cut(s) 31, 901, 982
Hpy166II GTNNAC 2 cut(s) 312, 1230
Hpy188I TCNGA 6 cut(s) 152, 245, 376, 604, 1054, 1082
Hpy8I GTNNAC 2 cut(s) 312, 1230
Hpy99I CGWCG 2 cut(s) 410, 822
HpyAV CCTTC 2 cut(s) 229, 1117
HpyCH4III ACNGT 3 cut(s) 884, 947, 1315
HpyCH4IV ACGT 1 cut(s) 799
HpyCH4V TGCA 4 cut(s) 144, 692, 700, 1300
HpyF10VI GCNNNNNNNGC 5 cut(s) 131, 265, 276, 676, 975
HpyF3I CTNAG 4 cut(s) 113, 242, 389, 671
HpySE526I ACGT 1 cut(s) 799
Hsp92II CATG 7 cut(s) 38, 82, 928, 978, 1184, 1208, 1251
HspAI GCGC 1 cut(s) 268
Kpn2I TCCGGA 1 cut(s) 50
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
KspI CCGCGG 1 cut(s) 229
Kzo9I GATC 8 cut(s) 64, 90, 249, 487, 586, 607, 870, 1243
LmnI GCTCC 1 cut(s) 256
Lsp1109I GCAGC 3 cut(s) 109, 684, 1284
LweI GCATC 1 cut(s) 153
MaeI CTAG 4 cut(s) 71, 354, 846, 1019
MaeII ACGT 1 cut(s) 799
MaeIII GTNAC 2 cut(s) 37, 368
MalI GATC 8 cut(s) 66, 92, 251, 489, 588, 609, 872, 1245
MboI GATC 8 cut(s) 64, 90, 249, 487, 586, 607, 870, 1243
MboII GAAGA 7 cut(s) 35, 100, 139, 530, 617, 646, 1103
MfeI CAATTG 1 cut(s) 1072
MhlI GDGCHC 4 cut(s) 237, 261, 303, 932
MluCI AATT 4 cut(s) 781, 1072, 1114, 1163
MlyI GAGTC 3 cut(s) 162, 307, 611
MnlI CCTC 8 cut(s) 111, 122, 145, 247, 251, 666, 912, 1087
MroI TCCGGA 1 cut(s) 50
MroNI GCCGGC 1 cut(s) 125
MroXI GAANNNNTTC 1 cut(s) 1166
MseI TTAA 4 cut(s) 437, 941, 1110, 1319
MslI CAYNNNNRTG 3 cut(s) 33, 500, 582
MspA1I CMGCKG 2 cut(s) 228, 755
MspI CCGG 3 cut(s) 51, 126, 736
MspR9I CCNGG 1 cut(s) 771
MunI CAATTG 1 cut(s) 1072
MvaI CCWGG 1 cut(s) 771
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 5 cut(s) 131, 265, 276, 676, 975
NaeI GCCGGC 1 cut(s) 127
NcoI CCATGG 1 cut(s) 1247
NdeI CATATG 1 cut(s) 666
NdeII GATC 8 cut(s) 64, 90, 249, 487, 586, 607, 870, 1243
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 7 cut(s) 38, 82, 928, 978, 1184, 1208, 1251
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 37
NspI RCATGY 1 cut(s) 1208
NspV TTCGAA 1 cut(s) 451
PagI TCATGA 1 cut(s) 924
PdiI GCCGGC 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 1166
PfeI GAWTC 1 cut(s) 828
PkrI GCNGC 6 cut(s) 124, 230, 678, 699, 968, 1299
PleI GAGTC 3 cut(s) 161, 307, 611
PpsI GAGTC 3 cut(s) 161, 307, 611
Psp124BI GAGCTC 1 cut(s) 932
Psp6I CCWGG 1 cut(s) 769
PspGI CCWGG 1 cut(s) 769
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 1 cut(s) 215
PstI CTGCAG 1 cut(s) 1302
PvuII CAGCTG 1 cut(s) 755
RsaI GTAC 5 cut(s) 83, 191, 715, 1179, 1229
RsaNI GTAC 5 cut(s) 82, 190, 714, 1178, 1228
RseI CAYNNNNRTG 3 cut(s) 33, 500, 582
SacI GAGCTC 1 cut(s) 932
SacII CCGCGG 1 cut(s) 229
SaqAI TTAA 4 cut(s) 437, 941, 1110, 1319
SatI GCNGC 6 cut(s) 123, 229, 677, 698, 967, 1298
Sau3AI GATC 8 cut(s) 64, 90, 249, 487, 586, 607, 870, 1243
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 3 cut(s) 162, 307, 611
ScrFI CCNGG 1 cut(s) 771
SduI GDGCHC 4 cut(s) 237, 261, 303, 932
SfaNI GCATC 1 cut(s) 153
SfcI CTRYAG 1 cut(s) 1298
Sfr303I CCGCGG 1 cut(s) 229
SfuI TTCGAA 1 cut(s) 451
SgrBI CCGCGG 1 cut(s) 229
SinI GGWCC 1 cut(s) 215
SmiMI CAYNNNNRTG 3 cut(s) 33, 500, 582
SmlI CTYRAG 2 cut(s) 545, 572
SmoI CTYRAG 2 cut(s) 545, 572
Sse9I AATT 4 cut(s) 781, 1072, 1114, 1163
SsiI CCGC 5 cut(s) 158, 226, 228, 677, 967
SspMI CTAG 4 cut(s) 71, 354, 846, 1019
SstI GAGCTC 1 cut(s) 932
StyD4I CCNGG 1 cut(s) 769
StyI CCWWGG 2 cut(s) 274, 1247
TaaI ACNGT 3 cut(s) 884, 947, 1315
TaiI ACGT 1 cut(s) 802
TaqI TCGA 9 cut(s) 171, 252, 408, 441, 451, 820, 894, 1068, 1160
TaqII GACCGA 1 cut(s) 203
TasI AATT 4 cut(s) 781, 1072, 1114, 1163
TatI WGTACW 2 cut(s) 1177, 1227
TauI GCSGC 3 cut(s) 231, 679, 969
TfiI GAWTC 1 cut(s) 828
Tru1I TTAA 4 cut(s) 437, 941, 1110, 1319
Tru9I TTAA 4 cut(s) 437, 941, 1110, 1319
TscAI CASTG 2 cut(s) 400, 1318
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 3 cut(s) 122, 697, 1297
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 3 cut(s) 71, 913, 1104
TspGWI ACGGA 1 cut(s) 507
TspRI CASTG 2 cut(s) 400, 1318
VpaK11BI GGWCC 1 cut(s) 215
XceI RCATGY 1 cut(s) 1208
XcmI CCANNNNNNNNNTGG 1 cut(s) 343
XmnI GAANNNNTTC 1 cut(s) 1166
XspI CTAG 4 cut(s) 71, 354, 846, 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.