Rh3DG173000

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002063
Physical Location & Seq
Forward (+)
15211854 .. 15214657
2804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG173000.1

Sequence Viewer

Length: 1347 bp
ATGCATACCAATCCAGTTCAAGAAGAACACAACCATGTCACCCCCATCTCCGAAATGAACAATGATCGCCTAGCTTCCATGTACAAGAAGATCGCAGACCCTCCGAGACTCCTCAGCAATGCTGCCGGCAAAGACTCCTGCTGCATCTTCCGAGTCCCGCAGAGTCTCCTCGAGATTAACGGCAAGTCGTACCAGCCCCACATCGTCTCCATCGGTCCCTTCCACAGCGGCCAGCCCCACCTCAGAATGATCGAGGAGCACAAGTGGCGTTACCTGGGCTCTCTGCTTTCAAGAACAGAGCCCAAAGGGTTGACTCTCCAGCACTACTTGAAGTCCATAGAGCCAATGGAGGATAGAGTCAGAGAGTGTTACTCTGAAACAATCCACCTCAGTAGTGATGAGTTCATCGAAATGATGGTTGTTGATGGTTGCTTCTTAATCGAGTTGTTTCGAAAATTTGACCGTGTGGTTCGGTTTGAGCGCGATGATCCACTCATCAATATGTTCTGGGTAATTCCGTTTATGGTTAGAGATTTTCTTCGTCTTGAGAACCAAATCCCCTACTTTATACTTGAGCATTTGTATGATCTGATAACCAAGTCGGAAGATCGTCAAGACTCTGTGAAGTCTTTGTCCTTGCTTGCTTTAAACTTCTTCAACAACCATATGGACAGGCCGAAAGAAGTCATTGCAAAGCTGCATAATCTTACAGGTAAGCATTTGCTTGACTTACTCCGGTCAAGTGTGATACCAGCCGACCATGTTGAACCAGGACACAAGAATAGTACCCCAACCCACATTATACATTGTATTTCAAAGCTTCGTCGCGCTGGAATCAAGCTCAATCCTCCTAAAGAATACGAAAGCTTCTTGGCGATCAAGTTCAAGCGTGGAGTTATCGAAATGCCCCCAATCATCATAGACGATTTCATGAGCTCGTTCTTGTTGAACTGTGTAGCCTATGAGCAATGCCACAAGTCATGCTCCAAACACATCACCGCTTACGCAACGTTGCTGGATTACCTAGTGAATACTTACAAGGATGTCGAGTATTTGGCTGACAGAAACATAATCGAGAATTGCTTCGGAAACGATGAGGAGGTTACTCATTTTATTAACAATTTGGGTAAGGATGTGGCTTTTGATGATGAAAGATGTTATCTGTCGAAATTGTTCAATGATGTTCATCAGTATTACAGCAATAGTAGGCATGTTCAATGGGCAAGCTTCAAGTACACTTACTTTGACACTCCATGGTCGTTTATTTCGGCTTTTGCTGCGTTGATTTTGCTCATATTCACCTTGCTGCAGACCTTATACACTGTTTTAAGTTATTATCATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

448

Amino Acids

52.37

Weight (kDa)

6.29

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 49 - 433 9.7e-124 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 483, 828
AciI CCGC 3 cut(s) 158, 228, 999
AclI AACGTT 1 cut(s) 1010
AclWI GGATC 1 cut(s) 482
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 1 cut(s) 455
AfaI GTAC 4 cut(s) 83, 191, 787, 1235
AjnI CCWGG 2 cut(s) 273, 769
AluBI AGCT 7 cut(s) 74, 697, 820, 841, 867, 936, 1227
AluI AGCT 7 cut(s) 74, 697, 820, 841, 867, 936, 1227
Alw21I GWGCWC 2 cut(s) 261, 938
Alw26I GTCTC 3 cut(s) 100, 170, 211
AlwI GGATC 1 cut(s) 482
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 2 cut(s) 229, 674
ApeKI GCWGC 5 cut(s) 122, 141, 697, 1277, 1306
ApoI RAATTY 1 cut(s) 455
Asp700I GAANNNNTTC 2 cut(s) 1082, 1172
AspLEI GCGC 2 cut(s) 483, 830
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 3 cut(s) 31, 988, 1291
AsuII TTCGAA 1 cut(s) 451
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 1 cut(s) 215
BanII GRGCYC 3 cut(s) 281, 303, 938
Bbv12I GWGCWC 2 cut(s) 261, 938
BbvCI CCTCAGC 1 cut(s) 113
BbvI GCAGC 5 cut(s) 109, 128, 684, 1264, 1293
BccI CCATC 4 cut(s) 53, 218, 409, 419
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 2 cut(s) 275, 771
BcoDI GTCTC 3 cut(s) 100, 170, 211
BfaI CTAG 2 cut(s) 71, 1025
BfmI CTRYAG 1 cut(s) 1307
BisI GCNGC 6 cut(s) 123, 142, 229, 698, 1278, 1307
BlsI GCNGC 6 cut(s) 124, 143, 230, 699, 1279, 1308
Bme1390I CCNGG 2 cut(s) 275, 771
Bme18I GGWCC 1 cut(s) 215
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 2 cut(s) 275, 771
BmsI GCATC 1 cut(s) 153
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpmI CTGGAG 1 cut(s) 302
Bpu10I CCTNAGC 1 cut(s) 113
Bpu14I TTCGAA 1 cut(s) 451
BpuEI CTTGAG 2 cut(s) 566, 593
BsaBI GATNNNNATC 1 cut(s) 1185
BsaJI CCNNGG 2 cut(s) 274, 1253
BsaWI WCCGGW 1 cut(s) 735
BsaXI ACNNNNNCTCC 4 cut(s) 191, 221, 248, 278
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 14
Bse3DI GCAATG 3 cut(s) 124, 687, 974
Bse8I GATNNNNATC 1 cut(s) 1185
BseBI CCWGG 2 cut(s) 275, 771
BseDI CCNNGG 2 cut(s) 274, 1253
BseGI GGATG 2 cut(s) 1048, 1138
BseJI GATNNNNATC 1 cut(s) 1185
BseMI GCAATG 3 cut(s) 124, 687, 974
BseMII CTCAG 3 cut(s) 127, 256, 403
BseNI ACTGG 1 cut(s) 14
BseRI GAGGAG 4 cut(s) 101, 158, 269, 1112
BseXI GCAGC 5 cut(s) 109, 128, 684, 1264, 1293
Bsh1236I CGCG 2 cut(s) 483, 828
BshFI GGCC 2 cut(s) 231, 676
BsiHKAI GWGCWC 2 cut(s) 261, 938
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 2 cut(s) 126, 736
BslFI GGGAC 2 cut(s) 140, 201
BsmAI GTCTC 3 cut(s) 100, 170, 211
BsmBI CGTCTC 1 cut(s) 211
BsmFI GGGAC 2 cut(s) 140, 201
BsnI GGCC 2 cut(s) 231, 676
BsoBI CYCGRG 1 cut(s) 170
Bsp119I TTCGAA 1 cut(s) 451
Bsp1286I GDGCHC 4 cut(s) 261, 281, 303, 938
Bsp1407I TGTACA 1 cut(s) 81
Bsp143I GATC 7 cut(s) 64, 90, 249, 487, 586, 607, 876
Bsp19I CCATGG 1 cut(s) 1253
BspACI CCGC 3 cut(s) 158, 228, 999
BspANI GGCC 2 cut(s) 231, 676
BspCNI CTCAG 3 cut(s) 126, 255, 402
BspFNI CGCG 2 cut(s) 483, 828
BspHI TCATGA 1 cut(s) 930
BspLI GGNNCC 1 cut(s) 217
BspMAI CTGCAG 1 cut(s) 1311
BspPI GGATC 1 cut(s) 482
BspT104I TTCGAA 1 cut(s) 451
BsrDI GCAATG 3 cut(s) 124, 687, 974
BsrFI RCCGGY 1 cut(s) 125
BsrGI TGTACA 1 cut(s) 81
BsrI ACTGG 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 274, 1253
BssMI GATC 7 cut(s) 64, 90, 249, 487, 586, 607, 876
BssT1I CCWWGG 1 cut(s) 1253
Bst2UI CCWGG 2 cut(s) 275, 771
Bst4CI ACNGT 3 cut(s) 464, 953, 1324
BstAUI TGTACA 1 cut(s) 81
BstBI TTCGAA 1 cut(s) 451
BstC8I GCNNGC 4 cut(s) 127, 233, 642, 1225
BstDEI CTNAG 3 cut(s) 113, 242, 389
BstDSI CCRYGG 1 cut(s) 1253
BstF5I GGATG 2 cut(s) 1048, 1138
BstFNI CGCG 2 cut(s) 483, 828
BstHHI GCGC 2 cut(s) 483, 830
BstKTI GATC 7 cut(s) 67, 93, 252, 490, 589, 610, 879
BstMAI GTCTC 3 cut(s) 100, 170, 211
BstMBI GATC 7 cut(s) 64, 90, 249, 487, 586, 607, 876
BstMWI GCNNNNNNNGC 2 cut(s) 265, 1277
BstNI CCWGG 2 cut(s) 275, 771
BstNSI RCATGY 1 cut(s) 1214
BstSCI CCNGG 2 cut(s) 273, 769
BstSFI CTRYAG 1 cut(s) 1307
BstUI CGCG 2 cut(s) 483, 828
BstV1I GCAGC 5 cut(s) 109, 128, 684, 1264, 1293
BsuRI GGCC 2 cut(s) 231, 676
BtgI CCRYGG 1 cut(s) 1253
BtgZI GCGATG 1 cut(s) 498
BtsCI GGATG 2 cut(s) 1048, 1138
BtsIMutI CAGTG 1 cut(s) 1320
Cac8I GCNNGC 4 cut(s) 127, 233, 642, 1225
CciI TCATGA 1 cut(s) 930
CfoI GCGC 2 cut(s) 483, 830
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 215
Csp6I GTAC 4 cut(s) 82, 190, 786, 1234
CviAII CATG 7 cut(s) 35, 79, 761, 931, 981, 1211, 1254
CviQI GTAC 4 cut(s) 82, 190, 786, 1234
DdeI CTNAG 3 cut(s) 113, 242, 389
DpnI GATC 7 cut(s) 66, 92, 251, 489, 588, 609, 878
DpnII GATC 7 cut(s) 64, 90, 249, 487, 586, 607, 876
DraI TTTAAA 1 cut(s) 648
EaeI YGGCCR 1 cut(s) 229
Ecl136II GAGCTC 1 cut(s) 936
Eco130I CCWWGG 1 cut(s) 1253
Eco24I GRGCYC 3 cut(s) 281, 303, 938
Eco47I GGWCC 1 cut(s) 215
Eco53kI GAGCTC 1 cut(s) 936
Eco88I CYCGRG 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 936
EcoRII CCWGG 2 cut(s) 273, 769
EcoT14I CCWWGG 1 cut(s) 1253
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 3 cut(s) 281, 303, 938
ErhI CCWWGG 1 cut(s) 1253
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 7 cut(s) 38, 82, 764, 934, 984, 1214, 1257
FaqI GGGAC 2 cut(s) 140, 201
FatI CATG 7 cut(s) 34, 78, 760, 930, 980, 1210, 1253
FauI CCCGC 1 cut(s) 165
FauNDI CATATG 1 cut(s) 666
Fnu4HI GCNGC 6 cut(s) 123, 142, 229, 698, 1278, 1307
FokI GGATG 2 cut(s) 1055, 1145
FriOI GRGCYC 3 cut(s) 281, 303, 938
Fsp4HI GCNGC 6 cut(s) 123, 142, 229, 698, 1278, 1307
FspBI CTAG 2 cut(s) 71, 1025
GlaI GCGC 2 cut(s) 482, 829
GluI GCNGC 6 cut(s) 123, 142, 229, 698, 1278, 1307
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 2 cut(s) 231, 676
HapII CCGG 2 cut(s) 126, 736
HhaI GCGC 2 cut(s) 483, 830
Hin1II CATG 7 cut(s) 38, 82, 764, 934, 984, 1214, 1257
Hin6I GCGC 2 cut(s) 481, 828
HinP1I GCGC 2 cut(s) 481, 828
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HindIII AAGCTT 3 cut(s) 818, 865, 1225
HinfI GANTC 8 cut(s) 108, 134, 153, 163, 313, 357, 617, 834
HpaII CCGG 2 cut(s) 126, 736
HphI GGTGA 3 cut(s) 31, 988, 1291
Hpy166II GTNNAC 2 cut(s) 312, 1236
Hpy188I TCNGA 9 cut(s) 52, 105, 152, 245, 362, 376, 591, 604, 1088
Hpy188III TCNNGA 8 cut(s) 20, 172, 291, 545, 614, 931, 1075, 1344
Hpy8I GTNNAC 2 cut(s) 312, 1236
Hpy99I CGWCG 1 cut(s) 828
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 3 cut(s) 464, 953, 1324
HpyCH4IV ACGT 1 cut(s) 1010
HpyCH4V TGCA 5 cut(s) 4, 144, 692, 700, 1309
HpyF10VI GCNNNNNNNGC 2 cut(s) 265, 1277
HpyF3I CTNAG 3 cut(s) 113, 242, 389
HpySE526I ACGT 1 cut(s) 1010
Hsp92II CATG 7 cut(s) 38, 82, 764, 934, 984, 1214, 1257
HspAI GCGC 2 cut(s) 481, 828
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Kzo9I GATC 7 cut(s) 64, 90, 249, 487, 586, 607, 876
LmnI GCTCC 2 cut(s) 256, 989
Lsp1109I GCAGC 5 cut(s) 109, 128, 684, 1264, 1293
LweI GCATC 1 cut(s) 153
MaeI CTAG 2 cut(s) 71, 1025
MaeII ACGT 1 cut(s) 1010
MaeIII GTNAC 4 cut(s) 37, 269, 368, 1102
MalI GATC 7 cut(s) 66, 92, 251, 489, 588, 609, 878
MboI GATC 7 cut(s) 64, 90, 249, 487, 586, 607, 876
MboII GAAGA 6 cut(s) 35, 100, 139, 530, 617, 646
MhlI GDGCHC 4 cut(s) 261, 281, 303, 938
MluCI AATT 5 cut(s) 455, 513, 1078, 1120, 1169
MlyI GAGTC 7 cut(s) 102, 128, 162, 172, 307, 366, 611
MmeI TCCRAC 1 cut(s) 582
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 125
MroXI GAANNNNTTC 2 cut(s) 1082, 1172
MseI TTAA 5 cut(s) 177, 437, 647, 1116, 1328
MslI CAYNNNNRTG 4 cut(s) 33, 410, 500, 582
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 2 cut(s) 126, 736
MspR9I CCNGG 2 cut(s) 275, 771
MvaI CCWGG 2 cut(s) 275, 771
MvnI CGCG 2 cut(s) 483, 828
MwoI GCNNNNNNNGC 2 cut(s) 265, 1277
NaeI GCCGGC 1 cut(s) 127
NcoI CCATGG 1 cut(s) 1253
NdeI CATATG 1 cut(s) 666
NdeII GATC 7 cut(s) 64, 90, 249, 487, 586, 607, 876
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 7 cut(s) 38, 82, 764, 934, 984, 1214, 1257
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 37
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 1214
NspV TTCGAA 1 cut(s) 451
PaeR7I CTCGAG 1 cut(s) 170
PagI TCATGA 1 cut(s) 930
PdiI GCCGGC 1 cut(s) 127
PdmI GAANNNNTTC 2 cut(s) 1082, 1172
PfeI GAWTC 1 cut(s) 834
PkrI GCNGC 6 cut(s) 124, 143, 230, 699, 1279, 1308
PleI GAGTC 7 cut(s) 102, 128, 161, 171, 307, 365, 611
PpsI GAGTC 7 cut(s) 102, 128, 161, 171, 307, 365, 611
Psp124BI GAGCTC 1 cut(s) 938
Psp1406I AACGTT 1 cut(s) 1010
Psp6I CCWGG 2 cut(s) 273, 769
PspGI CCWGG 2 cut(s) 273, 769
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 1 cut(s) 215
PstI CTGCAG 1 cut(s) 1311
RsaI GTAC 4 cut(s) 83, 191, 787, 1235
RsaNI GTAC 4 cut(s) 82, 190, 786, 1234
RseI CAYNNNNRTG 4 cut(s) 33, 410, 500, 582
SacI GAGCTC 1 cut(s) 938
SaqAI TTAA 5 cut(s) 177, 437, 647, 1116, 1328
SatI GCNGC 6 cut(s) 123, 142, 229, 698, 1278, 1307
Sau3AI GATC 7 cut(s) 64, 90, 249, 487, 586, 607, 876
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 7 cut(s) 102, 128, 162, 172, 307, 366, 611
ScrFI CCNGG 2 cut(s) 275, 771
SduI GDGCHC 4 cut(s) 261, 281, 303, 938
SfaNI GCATC 1 cut(s) 153
SfcI CTRYAG 1 cut(s) 1307
Sfr274I CTCGAG 1 cut(s) 170
SfuI TTCGAA 1 cut(s) 451
SinI GGWCC 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 170
SmiMI CAYNNNNRTG 4 cut(s) 33, 410, 500, 582
SmlI CTYRAG 3 cut(s) 170, 545, 572
SmoI CTYRAG 3 cut(s) 170, 545, 572
Sse9I AATT 5 cut(s) 455, 513, 1078, 1120, 1169
SsiI CCGC 3 cut(s) 158, 228, 999
SspMI CTAG 2 cut(s) 71, 1025
SstI GAGCTC 1 cut(s) 938
StyD4I CCNGG 2 cut(s) 273, 769
StyI CCWWGG 1 cut(s) 1253
TaaI ACNGT 3 cut(s) 464, 953, 1324
TaiI ACGT 1 cut(s) 1013
TaqI TCGA 9 cut(s) 171, 252, 408, 441, 451, 900, 1047, 1074, 1166
TaqII GACCGA 1 cut(s) 203
TasI AATT 5 cut(s) 455, 513, 1078, 1120, 1169
TatI WGTACW 2 cut(s) 81, 1233
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 1 cut(s) 834
Tru1I TTAA 5 cut(s) 177, 437, 647, 1116, 1328
Tru9I TTAA 5 cut(s) 177, 437, 647, 1116, 1328
TscAI CASTG 1 cut(s) 1327
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 5 cut(s) 122, 141, 697, 1277, 1306
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 5 cut(s) 71, 394, 919, 1164, 1175
TspGWI ACGGA 1 cut(s) 507
TspRI CASTG 1 cut(s) 1327
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 1 cut(s) 455
XceI RCATGY 1 cut(s) 1214
XcmI CCANNNNNNNNNTGG 1 cut(s) 343
XhoI CTCGAG 1 cut(s) 170
XmnI GAANNNNTTC 2 cut(s) 1082, 1172
XspI CTAG 2 cut(s) 71, 1025
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.