Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001148

Physical Location & Seq

Genomic Coordinates Forward (+)

1242929 .. 1246211

Gene Structure 3283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGAGGTGGATAAGAAGGACGAGAGAGAGGCTGAATCTTCGGAGCAAGTGGTGAATCCATGGGAAGTGTCCGCCAAAGACGGCGGGAAGATCGATTACGACAAGCTTATTGACAAATTTGGATGTCAAAGGCTTGACGAGTCACTGATTGATCGTGTTCAGAGACTGACTTCTCGTCAACCACACGTGTTCCTCCGCCGTAGTGTCTTCTTCGCCCACCGGGATTTCAATGAGATTTTGGACGCTTATGAGAGAGGAGACAAGTTCTATCTCTACACTGGAAGAGGACCTTCATCAGAAGCATTGCATTTGGGGCATTTGATTCCTTTCATGTTTACCAAATACTTGCAAGAAGCTTTCAAGGTTCCCCTTGTTATACAGCTCACGGATGATGAAAAAAGTATATGGAAGAACTTATCGGTGGAGGAAAGTCAAAGACTTGCCAGAGAAAATGCGAAAGATATTATTGCTTGTGGATTCGATGTAACAAAGACCTTCATTTTCTCGGACTTCGACTATGTTGGCGGTGCTTTCTATAAAAATATGGTGAAGGTTGGCAAGTGCGTTACACTTAATAAGGCTATGGGAATCTTTGGCTTTTCCGGTGAAGATCCTATCGCGAAACTCAGTTTCCCTCCTGTGCAGGCAGTTCCATCTTTTCCTAGCTCATTCCCACATTTGTTCCCTGGCAAGGACAATCTCCGCTGCTTGATTCCTTGTGCTATTGACCAGGATCCTTATTTTAGAATGACTCGTGATGTCGCACCCCGGTTAGGCTATAGCAAGCCCGCCCTGATTGAGTCAACATTTTTTCCTGCGTTGCAGGGAGAGAATGGAAAAATGTCTGCTAGTGATCCAAATTCTGCTATCTATGTGACTGATTCCGCAAAGGACATTAAAAACAAGATAAACAGATATGCGTTTAGTGGTGGGCAAGACTCCATTGAGAAGCACCGAGAACTTGGAGCAAATCTCGAGGTTGACATACCCGTCAAGTATCTGAGTTTCTTCCTCGAAGACGATTCTGAACTAGAACACATTAAAAAGGAATATGGAGAAGGAAGAATGCTAACAGGAGAAGTAAAGAAGAGACTTACGGAAGTGTTGACAGAAATTGTGGAGAGACACCGCAGGGCTCGAGCTGCTGTTACTGATGAGATGGTTGATGCGTTCATGGCGGTGAGACCTCTCCCAAGCATGTTCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004830 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006436 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

402

Amino Acids

45.75

Weight (kDa)

5.67

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1b	PF00579	87 - 372	2.8e-24	tRNA synthetases class I (W and Y)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04600 AT3G04600 AT3G04600
fragaria_vesca	FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_5g27321
malus_domestica	MD04G1236500.v1.1 MD12G1255800.v1.1
prunus_persica	Prupe.7G057000_v2.0.a1 Prupe.7G057800_v2.0.a1
pyrus_communis	pycom04g21040 pycom12g23440
rosa_chinensis	RchiOBHm_Chr3g0493481 RchiOBHm_Chr7g0219201 RchiOBHm_Chr7g0219221 RchiOBHm_Chr7g0223011
rosa_laevigata	RLG00000002003 RLG00000002302 RLG00000002303 RLG00000022713
rosa_multiflora	Rmu_sc0000868.1_g000014 Rmu_sc0006373.1_g000002 Rmu_sc0006514.1_g000024 Rmu_sc0007422.1_g000005 Rmu_sc0009785.1_g000024 Rmu_sc0039697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234440 Rroxscaffold_3G00236350 Rroxscaffold_3G00237890 Rroxscaffold_3G00237970 Rroxscaffold_3G00238030 Rroxscaffold_3G00238960 Rroxscaffold_3G00238970 Rroxscaffold_5G00377610 Rroxscaffold_6G00391570 Rroxscaffold_7G00199590 Rroxscaffold_7G00199600
rosa_rugosa	Rorug07G0177500 Rorug07G0177500 Rorug07G0212800
rosa_samantha	Rh3AG310200 Rh3BG346300 Rh3CG344200 Rh3DG345400 Rh7AG319000 Rh7AG326700 Rh7AG357900 Rh7BG310900 Rh7BG346100 Rh7CG376000 Rh7DG318100 Rh7DG318200 Rh7DG352800
rosa_wichuraiana	Rw3G027260 Rw7G027160 Rw7G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	989
AccII	CGCG	1 cut(s)	620
AciI	CCGC	9 cut(s)	72, 84, 196, 525, 703, 789, 885, 1129, 1178
AclWI	GGATC	4 cut(s)	605, 728, 741, 848
AcsI	RAATTY	2 cut(s)	116, 859
AcvI	CACGTG	1 cut(s)	187
AfiI	CCNNNNNNNGG	2 cut(s)	691, 773
AflIII	ACRYGT	2 cut(s)	184, 186
AgsI	TTSAA	2 cut(s)	229, 361
AhdI	GACNNNNNGTC	1 cut(s)	174
AjnI	CCWGG	2 cut(s)	685, 729
AluBI	AGCT	5 cut(s)	106, 356, 382, 666, 1142
AluI	AGCT	5 cut(s)	106, 356, 382, 666, 1142
Alw26I	GTCTC	5 cut(s)	157, 252, 1084, 1117, 1177
AlwI	GGATC	4 cut(s)	605, 728, 741, 848
AlwNI	CAGNNNCTG	1 cut(s)	166
Ama87I	CYCGRG	2 cut(s)	974, 1137
ApeKI	GCWGC	2 cut(s)	705, 1142
ApoI	RAATTY	2 cut(s)	116, 859
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	2 cut(s)	221, 769
AsuHPI	GGTGA	4 cut(s)	64, 559, 617, 1192
AsuII	TTCGAA	1 cut(s)	1203
AvaI	CYCGRG	2 cut(s)	974, 1137
AvaII	GGWCC	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	733
BanII	GRGCYC	1 cut(s)	1138
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
BauI	CACGAG	1 cut(s)	753
BbrPI	CACGTG	1 cut(s)	187
BbsI	GAAGAC	2 cut(s)	199, 1023
BbvI	GCAGC	2 cut(s)	692, 1129
BccI	CCATC	2 cut(s)	661, 1153
BceAI	ACGGC	2 cut(s)	97, 183
BciT130I	CCWGG	2 cut(s)	687, 731
BcnI	CCSGG	2 cut(s)	221, 769
BcoDI	GTCTC	5 cut(s)	157, 252, 1084, 1117, 1177
BfaI	CTAG	3 cut(s)	663, 849, 1031
BfmI	CTRYAG	1 cut(s)	778
BisI	GCNGC	2 cut(s)	706, 1143
BlsI	GCNGC	2 cut(s)	707, 1144
Bme1390I	CCNGG	4 cut(s)	221, 687, 731, 769
Bme18I	GGWCC	1 cut(s)	287
BmeRI	GACNNNNNGTC	1 cut(s)	174
BmeT110I	CYCGRG	2 cut(s)	974, 1137
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	2 cut(s)	366, 735
BmrFI	CCNGG	4 cut(s)	221, 687, 731, 769
BmsI	GCATC	1 cut(s)	1156
BpiI	GAAGAC	2 cut(s)	199, 1023
BplI	GAGNNNNNCTC	2 cut(s)	957, 989
Bpu14I	TTCGAA	1 cut(s)	1203
BpuMI	CCSGG	2 cut(s)	221, 769
Bsa29I	ATCGAT	1 cut(s)	93
BsaAI	YACGTR	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	1177
BsaJI	CCNNGG	3 cut(s)	59, 685, 767
BsaWI	WCCGGW	1 cut(s)	602
Bsc4I	CCNNNNNNNGG	2 cut(s)	691, 773
Bse1I	ACTGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	302
BseBI	CCWGG	2 cut(s)	687, 731
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	3 cut(s)	59, 685, 767
BseGI	GGATG	2 cut(s)	128, 394
BseLI	CCNNNNNNNGG	2 cut(s)	691, 773
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	2 cut(s)	640, 992
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	692, 1129
BsgI	GTGCAG	1 cut(s)	662
Bsh1236I	CGCG	1 cut(s)	620
BshVI	ATCGAT	1 cut(s)	93
BsiHKCI	CYCGRG	2 cut(s)	974, 1137
BsiSI	CCGG	3 cut(s)	220, 603, 769
BslI	CCNNNNNNNGG	2 cut(s)	691, 773
BsmAI	GTCTC	5 cut(s)	157, 252, 1084, 1117, 1177
BsmI	GAATGC	1 cut(s)	1071
Bso31I	GGTCTC	1 cut(s)	1177
BsoBI	CYCGRG	2 cut(s)	974, 1137
Bsp119I	TTCGAA	1 cut(s)	1203
Bsp1286I	GDGCHC	1 cut(s)	1138
Bsp143I	GATC	5 cut(s)	90, 151, 610, 733, 853
Bsp19I	CCATGG	1 cut(s)	59
Bsp68I	TCGCGA	1 cut(s)	620
BspACI	CCGC	9 cut(s)	72, 84, 196, 525, 703, 789, 885, 1129, 1178
BspCNI	CTCAG	2 cut(s)	639, 993
BspDI	ATCGAT	1 cut(s)	93
BspFNI	CGCG	1 cut(s)	620
BspLI	GGNNCC	2 cut(s)	366, 735
BspPI	GGATC	4 cut(s)	605, 728, 741, 848
BspT104I	TTCGAA	1 cut(s)	1203
BspTNI	GGTCTC	1 cut(s)	1177
BsrDI	GCAATG	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	3 cut(s)	59, 685, 767
BssMI	GATC	5 cut(s)	90, 151, 610, 733, 853
BssSI	CACGAG	1 cut(s)	753
BssT1I	CCWWGG	1 cut(s)	59
Bst2BI	CACGAG	1 cut(s)	753
Bst2UI	CCWGG	2 cut(s)	687, 731
Bst6I	CTCTTC	2 cut(s)	277, 1082
BstBAI	YACGTR	1 cut(s)	187
BstBI	TTCGAA	1 cut(s)	1203
BstC8I	GCNNGC	3 cut(s)	645, 785, 789
BstDEI	CTNAG	2 cut(s)	626, 1001
BstDSI	CCRYGG	1 cut(s)	59
BstF5I	GGATG	2 cut(s)	128, 394
BstFNI	CGCG	1 cut(s)	620
BstKTI	GATC	5 cut(s)	93, 154, 613, 736, 856
BstMAI	GTCTC	5 cut(s)	157, 252, 1084, 1117, 1177
BstMBI	GATC	5 cut(s)	90, 151, 610, 733, 853
BstMWI	GCNNNNNNNGC	3 cut(s)	313, 1142, 1175
BstNI	CCWGG	2 cut(s)	687, 731
BstNSI	RCATGY	1 cut(s)	1201
BstSCI	CCNGG	4 cut(s)	219, 685, 729, 767
BstSFI	CTRYAG	1 cut(s)	778
BstUI	CGCG	1 cut(s)	620
BstV1I	GCAGC	2 cut(s)	692, 1129
BstV2I	GAAGAC	2 cut(s)	199, 1023
BstX2I	RGATCY	2 cut(s)	610, 733
BstYI	RGATCY	2 cut(s)	610, 733
Bsu15I	ATCGAT	1 cut(s)	93
BsuTUI	ATCGAT	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	59
BtsCI	GGATG	2 cut(s)	128, 394
BtsIMutI	CAGTG	2 cut(s)	143, 276
BtuMI	TCGCGA	1 cut(s)	620
Cac8I	GCNNGC	3 cut(s)	645, 785, 789
CaiI	CAGNNNCTG	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	287
ClaI	ATCGAT	1 cut(s)	93
CseI	GACGC	1 cut(s)	251
CviAII	CATG	4 cut(s)	60, 331, 1174, 1198
DdeI	CTNAG	2 cut(s)	626, 1001
DpnI	GATC	5 cut(s)	92, 153, 612, 735, 855
DpnII	GATC	5 cut(s)	90, 151, 610, 733, 853
DrdI	GACNNNNNNGTC	1 cut(s)	989
DriI	GACNNNNNGTC	1 cut(s)	174
DseDI	GACNNNNNNGTC	1 cut(s)	989
Eam1104I	CTCTTC	2 cut(s)	277, 1082
Eam1105I	GACNNNNNGTC	1 cut(s)	174
EarI	CTCTTC	2 cut(s)	277, 1082
EciI	GGCGGA	2 cut(s)	61, 185
Eco130I	CCWWGG	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	1138
Eco31I	GGTCTC	1 cut(s)	1177
Eco47I	GGWCC	1 cut(s)	287
Eco72I	CACGTG	1 cut(s)	187
Eco88I	CYCGRG	2 cut(s)	974, 1137
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	685, 729
EcoT14I	CCWWGG	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	1138
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	4 cut(s)	63, 334, 1177, 1201
FalI	AAGNNNNNCTT	2 cut(s)	274, 306
FatI	CATG	4 cut(s)	59, 330, 1173, 1197
FauI	CCCGC	2 cut(s)	77, 796
Fnu4HI	GCNGC	2 cut(s)	706, 1143
FokI	GGATG	2 cut(s)	135, 401
FriOI	GRGCYC	1 cut(s)	1138
Fsp4HI	GCNGC	2 cut(s)	706, 1143
FspBI	CTAG	3 cut(s)	663, 849, 1031
GluI	GCNGC	2 cut(s)	706, 1143
HapII	CCGG	3 cut(s)	220, 603, 769
HgaI	GACGC	1 cut(s)	251
Hin1II	CATG	4 cut(s)	63, 334, 1177, 1201
HincII	GTYRAC	4 cut(s)	179, 804, 982, 1107
HindII	GTYRAC	4 cut(s)	179, 804, 982, 1107
HindIII	AAGCTT	2 cut(s)	104, 354
HpaII	CCGG	3 cut(s)	220, 603, 769
HphI	GGTGA	4 cut(s)	64, 559, 617, 1192
Hpy166II	GTNNAC	5 cut(s)	179, 336, 804, 982, 1107
Hpy188I	TCNGA	6 cut(s)	43, 162, 298, 508, 1002, 1027
Hpy188III	TCNNGA	3 cut(s)	619, 755, 974
Hpy8I	GTNNAC	5 cut(s)	179, 336, 804, 982, 1107
HpyAV	CCTTC	5 cut(s)	10, 300, 505, 544, 1052
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	4 cut(s)	307, 349, 643, 823
HpyF10VI	GCNNNNNNNGC	3 cut(s)	313, 1142, 1175
HpyF3I	CTNAG	2 cut(s)	626, 1001
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	4 cut(s)	63, 334, 1177, 1201
Kzo9I	GATC	5 cut(s)	90, 151, 610, 733, 853
LmnI	GCTCC	2 cut(s)	43, 965
Lsp1109I	GCAGC	2 cut(s)	692, 1129
LweI	GCATC	1 cut(s)	1156
MaeI	CTAG	3 cut(s)	663, 849, 1031
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	5 cut(s)	141, 484, 565, 874, 1147
MalI	GATC	5 cut(s)	92, 153, 612, 735, 855
MboI	GATC	5 cut(s)	90, 151, 610, 733, 853
MflI	RGATCY	2 cut(s)	610, 733
MhlI	GDGCHC	1 cut(s)	1138
MluCI	AATT	3 cut(s)	116, 859, 1113
MlyI	GAGTC	4 cut(s)	149, 745, 809, 932
MnlI	CCTC	9 cut(s)	22, 203, 248, 278, 418, 645, 970, 1022, 1197
MseI	TTAA	3 cut(s)	573, 897, 1041
MslI	CAYNNNNRTG	1 cut(s)	1178
MspA1I	CMGCKG	1 cut(s)	705
MspI	CCGG	3 cut(s)	220, 603, 769
MspR9I	CCNGG	4 cut(s)	221, 687, 731, 769
Mva1269I	GAATGC	1 cut(s)	1071
MvaI	CCWGG	2 cut(s)	687, 731
MvnI	CGCG	1 cut(s)	620
MwoI	GCNNNNNNNGC	3 cut(s)	313, 1142, 1175
NciI	CCSGG	2 cut(s)	221, 769
NcoI	CCATGG	1 cut(s)	59
NdeII	GATC	5 cut(s)	90, 151, 610, 733, 853
NlaIII	CATG	4 cut(s)	63, 334, 1177, 1201
NlaIV	GGNNCC	2 cut(s)	366, 735
NmuCI	GTSAC	2 cut(s)	141, 874
NruI	TCGCGA	1 cut(s)	620
NspI	RCATGY	1 cut(s)	1201
NspV	TTCGAA	1 cut(s)	1203
PaeR7I	CTCGAG	2 cut(s)	974, 1137
PctI	GAATGC	1 cut(s)	1071
PfeI	GAWTC	8 cut(s)	35, 55, 322, 477, 588, 712, 881, 1022
PkrI	GCNGC	2 cut(s)	707, 1144
PleI	GAGTC	4 cut(s)	148, 745, 808, 932
PmaCI	CACGTG	1 cut(s)	187
PmlI	CACGTG	1 cut(s)	187
PpsI	GAGTC	4 cut(s)	148, 745, 808, 932
Ppu21I	YACGTR	1 cut(s)	187
PpuMI	RGGWCCY	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	287
Psp6I	CCWGG	2 cut(s)	685, 729
PspCI	CACGTG	1 cut(s)	187
PspGI	CCWGG	2 cut(s)	685, 729
PspN4I	GGNNCC	2 cut(s)	366, 735
PspPI	GGNCC	1 cut(s)	287
PspPPI	RGGWCCY	1 cut(s)	287
PspXI	VCTCGAGB	1 cut(s)	1137
PstNI	CAGNNNCTG	1 cut(s)	166
PsuI	RGATCY	2 cut(s)	610, 733
RruI	TCGCGA	1 cut(s)	620
RseI	CAYNNNNRTG	1 cut(s)	1178
SaqAI	TTAA	3 cut(s)	573, 897, 1041
SatI	GCNGC	2 cut(s)	706, 1143
Sau3AI	GATC	5 cut(s)	90, 151, 610, 733, 853
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	4 cut(s)	149, 745, 809, 932
ScrFI	CCNGG	4 cut(s)	221, 687, 731, 769
SduI	GDGCHC	1 cut(s)	1138
SfaNI	GCATC	1 cut(s)	1156
SfcI	CTRYAG	1 cut(s)	778
Sfr274I	CTCGAG	2 cut(s)	974, 1137
SfuI	TTCGAA	1 cut(s)	1203
SinI	GGWCC	1 cut(s)	287
SlaI	CTCGAG	2 cut(s)	974, 1137
SmiMI	CAYNNNNRTG	1 cut(s)	1178
SmlI	CTYRAG	2 cut(s)	974, 1137
SmoI	CTYRAG	2 cut(s)	974, 1137
Sse9I	AATT	3 cut(s)	116, 859, 1113
SsiI	CCGC	9 cut(s)	72, 84, 196, 525, 703, 789, 885, 1129, 1178
SspMI	CTAG	3 cut(s)	663, 849, 1031
StyD4I	CCNGG	4 cut(s)	219, 685, 729, 767
StyI	CCWWGG	1 cut(s)	59
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	7 cut(s)	93, 480, 513, 975, 1014, 1138, 1203
TasI	AATT	3 cut(s)	116, 859, 1113
TfiI	GAWTC	8 cut(s)	35, 55, 322, 477, 588, 712, 881, 1022
Tru1I	TTAA	3 cut(s)	573, 897, 1041
Tru9I	TTAA	3 cut(s)	573, 897, 1041
TscAI	CASTG	2 cut(s)	150, 283
TseFI	GTSAC	2 cut(s)	141, 874
TseI	GCWGC	2 cut(s)	705, 1142
Tsp45I	GTSAC	2 cut(s)	141, 874
TspDTI	ATGAA	5 cut(s)	282, 319, 408, 487, 1162
TspGWI	ACGGA	2 cut(s)	401, 1112
TspRI	CASTG	2 cut(s)	150, 283
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	2 cut(s)	116, 859
XceI	RCATGY	1 cut(s)	1201
XhoI	CTCGAG	2 cut(s)	974, 1137
XspI	CTAG	3 cut(s)	663, 849, 1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.