MD04G1236500.v1.1

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
31534355 .. 31538124
3770 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1236500.v1.1.491

Sequence Viewer

Length: 1215 bp
ATGGAGGAGAGAGTGGGAGAGGCAGAACCAGAACAGCAGCAAGAGGAGGAGCAGGTAGTGAATCCATGGACGGTGTTGGCCAAGGGTGGCGGGAAAATCGACTACGACAAGCTCATCGACCAGTTCGGCTGCCAGAGAATCGACCAGCAGCTCGTGGATCGCATCCACTGCCTCACCGGCCGTCCTCCCCACGTCTTCCTCCGCCGTGGCGTCTTCTTTGCCCACAGGGACTTGAATGAGATTCTGGATGCCTACGAGAGAGGAGACAAGTTCTATTTGTACACAGGAAGAGGACCTTCCTCCGAAGCTTTGCATTTGGGGCATCTTATCCCCTTCATGTTCACTAAATATTTGCAAGATGTCTTCAAGGTTCCTCTCGTTGTACAACTTACCGATGATGAGAAGTGCATGTGGAAAAATCTGACTGTGGAAGAGAGCCAGAGACTTGCTAGGGAGAATGCTAAAGACATTATTGCTTGTGGTTTTGACATATCAAAAACCTTCATCTTCTCCGATTTTGATTTCGTTGGTGGTGCCTTCTACAAGAACATGGTGAAGGTTGGAAAGTGTGTCACATATAATAAGGTTGTTGGTATCTTTGGTTTCACTGGAGAAGATCACATAGGAAAAGTTAGTTTTCCACCTGTACAGGCAGTTCCCTCATTTCCAAGTTCATTTCCTCATCTCTTCTCTGGCCAAGACAATCTTCGATGCTTAATACCTTGTGCGATTGACCAGGATCCTTATTTTAGAATGACACGAGATGTTGCTCCACGAATTGGATATCACAAGCCTGCATTGATTGAGTCTTCTTTCTTCCCTGCCCTGCAGGGAGAGACTGGAAAAATGTCGGCTAGTGATCCAAATTCGGCCATATATGTAACTGATGCTGCAAAGGAAATTAAGAACAAGATAAACAGGTATGCATTTTCTGGTGGACAAGATTCGGTAGAGAAACATAGAGAGCTTGGAGCAAATCTTGAGGTAGATATTCCATTCAAATATCTGAGCTTTTTCCTAGACGACGATGATAAACTCGAAGAGATACGGAAGGAGTATGGTTCCGGACGCATGCTAACAGGTGAAGTGAAGCAACTTCTTGTTCAAGTTTTAACCGAAATGGTAGAAAGACATCGTAGGGCTAGGGCTGCTGTGACTGATGAGATGGTGGACGCATTTATGGCAGTGAGGCCTCTACCGAATATGTTCAGCTAA

Protein Analysis

405

Amino Acids

45.93

Weight (kDa)

5.58

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1b PF00579 89 - 374 4.4e-20 tRNA synthetases class I (W and Y)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 533
AccB7I CCANNNNNTGG 1 cut(s) 779
AccIII TCCGGA 1 cut(s) 1064
AciI CCGC 2 cut(s) 90, 202
AclWI GGATC 4 cut(s) 165, 734, 747, 854
AcoI YGGCCR 4 cut(s) 78, 178, 694, 870
AcsI RAATTY 1 cut(s) 865
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 3 cut(s) 281, 384, 648
AfiI CCNNNNNNNGG 1 cut(s) 779
AgsI TTSAA 4 cut(s) 235, 367, 1000, 1106
AjiI CACGTC 1 cut(s) 193
AjnI CCWGG 1 cut(s) 735
AjuI GAANNNNNNNTTGG 2 cut(s) 690, 722
AluBI AGCT 6 cut(s) 112, 151, 308, 967, 1011, 1212
AluI AGCT 6 cut(s) 112, 151, 308, 967, 1011, 1212
Alw26I GTCTC 3 cut(s) 258, 436, 830
AlwI GGATC 4 cut(s) 165, 734, 747, 854
Aor13HI TCCGGA 1 cut(s) 1064
AoxI GGCC 5 cut(s) 78, 178, 694, 870, 1190
ApeKI GCWGC 5 cut(s) 37, 129, 148, 890, 1148
ApoI RAATTY 1 cut(s) 865
Asp700I GAANNNNTTC 1 cut(s) 1205
AspS9I GGNCC 1 cut(s) 293
AsuHPI GGTGA 3 cut(s) 166, 565, 1094
AvaII GGWCC 1 cut(s) 293
BalI TGGCCA 2 cut(s) 80, 696
BamHI GGATCC 1 cut(s) 739
BanI GGYRCC 1 cut(s) 533
BauI CACGAG 2 cut(s) 152, 759
BbsI GAAGAC 4 cut(s) 187, 205, 355, 801
BbvI GCAGC 5 cut(s) 49, 116, 160, 877, 1135
BccI CCATC 1 cut(s) 1159
BceAI ACGGC 2 cut(s) 165, 189
BciT130I CCWGG 1 cut(s) 737
BcoDI GTCTC 3 cut(s) 258, 436, 830
BfaI CTAG 4 cut(s) 450, 855, 1019, 1143
BfmI CTRYAG 1 cut(s) 827
BfuAI ACCTGC 1 cut(s) 43
BglI GCCNNNNNGGC 1 cut(s) 177
BisI GCNGC 5 cut(s) 38, 130, 149, 891, 1149
BlsI GCNGC 5 cut(s) 39, 131, 150, 892, 1150
Bme1390I CCNGG 1 cut(s) 737
Bme18I GGWCC 1 cut(s) 293
BmgBI CACGTC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 4 cut(s) 372, 535, 741, 1063
BmrFI CCNGG 1 cut(s) 737
BmsI GCATC 5 cut(s) 171, 238, 331, 701, 877
BpiI GAAGAC 4 cut(s) 187, 205, 355, 801
BpmI CTGGAG 1 cut(s) 630
BpuEI CTTGAG 1 cut(s) 1001
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 3 cut(s) 65, 81, 205
BsaWI WCCGGW 1 cut(s) 1064
Bsc4I CCNNNNNNNGG 1 cut(s) 779
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 3 cut(s) 121, 613, 844
BseAI TCCGGA 1 cut(s) 1064
BseBI CCWGG 1 cut(s) 737
BseDI CCNNGG 3 cut(s) 65, 81, 205
BseGI GGATG 2 cut(s) 162, 253
BseLI CCNNNNNNNGG 1 cut(s) 779
BseMII CTCAG 1 cut(s) 998
BseNI ACTGG 3 cut(s) 121, 613, 844
BseRI GAGGAG 4 cut(s) 20, 59, 62, 276
BseX3I CGGCCG 1 cut(s) 178
BseXI GCAGC 5 cut(s) 49, 116, 160, 877, 1135
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 5 cut(s) 80, 180, 696, 872, 1192
BshNI GGYRCC 1 cut(s) 533
BsiEI CGRYCG 1 cut(s) 181
BsiSI CCGG 2 cut(s) 177, 1065
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 779
BsmAI GTCTC 3 cut(s) 258, 436, 830
BsmFI GGGAC 1 cut(s) 242
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 5 cut(s) 80, 180, 696, 872, 1192
Bsp13I TCCGGA 1 cut(s) 1064
Bsp1407I TGTACA 3 cut(s) 279, 382, 646
Bsp143I GATC 4 cut(s) 157, 616, 739, 859
Bsp19I CCATGG 1 cut(s) 65
BspACI CCGC 2 cut(s) 90, 202
BspANI GGCC 5 cut(s) 80, 180, 696, 872, 1192
BspCNI CTCAG 1 cut(s) 999
BspEI TCCGGA 1 cut(s) 1064
BspLI GGNNCC 4 cut(s) 372, 535, 741, 1063
BspMAI CTGCAG 1 cut(s) 831
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 4 cut(s) 165, 734, 747, 854
BspT107I GGYRCC 1 cut(s) 533
BsrFI RCCGGY 1 cut(s) 176
BsrGI TGTACA 3 cut(s) 279, 382, 646
BsrI ACTGG 3 cut(s) 121, 613, 844
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 3 cut(s) 65, 81, 205
BssMI GATC 4 cut(s) 157, 616, 739, 859
BssNI GRCGYC 1 cut(s) 210
BssSI CACGAG 2 cut(s) 152, 759
BssT1I CCWWGG 2 cut(s) 65, 81
Bst2BI CACGAG 2 cut(s) 152, 759
Bst2UI CCWGG 1 cut(s) 737
Bst4CI ACNGT 2 cut(s) 73, 427
Bst6I CTCTTC 4 cut(s) 283, 426, 692, 1035
BstACI GRCGYC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 168
BstAUI TGTACA 3 cut(s) 279, 382, 646
BstC8I GCNNGC 2 cut(s) 795, 1073
BstDEI CTNAG 1 cut(s) 1007
BstDSI CCRYGG 2 cut(s) 65, 205
BstF5I GGATG 2 cut(s) 162, 253
BstKTI GATC 4 cut(s) 160, 619, 742, 862
BstMAI GTCTC 3 cut(s) 258, 436, 830
BstMBI GATC 4 cut(s) 157, 616, 739, 859
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 5 cut(s) 168, 177, 319, 1148, 1181
BstNI CCWGG 1 cut(s) 737
BstNSI RCATGY 2 cut(s) 412, 1075
BstSCI CCNGG 1 cut(s) 735
BstSFI CTRYAG 1 cut(s) 827
BstV1I GCAGC 5 cut(s) 49, 116, 160, 877, 1135
BstV2I GAAGAC 4 cut(s) 187, 205, 355, 801
BstX2I RGATCY 1 cut(s) 739
BstYI RGATCY 1 cut(s) 739
BstZI CGGCCG 1 cut(s) 178
BsuRI GGCC 5 cut(s) 80, 180, 696, 872, 1192
BtgI CCRYGG 2 cut(s) 65, 205
BtrI CACGTC 1 cut(s) 193
BtsCI GGATG 2 cut(s) 162, 253
BtsI GCAGTG 2 cut(s) 166, 1191
BtsIMutI CAGTG 3 cut(s) 166, 606, 1191
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 2 cut(s) 795, 1073
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 293
CseI GACGC 3 cut(s) 199, 1077, 1181
Csp6I GTAC 3 cut(s) 280, 383, 647
CviAII CATG 5 cut(s) 66, 337, 409, 550, 1072
CviQI GTAC 3 cut(s) 280, 383, 647
DdeI CTNAG 1 cut(s) 1007
DpnI GATC 4 cut(s) 159, 618, 741, 861
DpnII GATC 4 cut(s) 157, 616, 739, 859
EaeI YGGCCR 4 cut(s) 78, 178, 694, 870
EagI CGGCCG 1 cut(s) 178
Eam1104I CTCTTC 4 cut(s) 283, 426, 692, 1035
EarI CTCTTC 4 cut(s) 283, 426, 692, 1035
EciI GGCGGA 1 cut(s) 191
EclXI CGGCCG 1 cut(s) 178
Eco130I CCWWGG 2 cut(s) 65, 81
Eco147I AGGCCT 1 cut(s) 1192
Eco32I GATATC 1 cut(s) 785
Eco47I GGWCC 1 cut(s) 293
Eco52I CGGCCG 1 cut(s) 178
EcoO109I RGGNCCY 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 735
EcoRV GATATC 1 cut(s) 785
EcoT14I CCWWGG 2 cut(s) 65, 81
EcoT22I ATGCAT 1 cut(s) 928
ErhI CCWWGG 2 cut(s) 65, 81
FaeI CATG 5 cut(s) 69, 340, 412, 553, 1075
FalI AAGNNNNNCTT 4 cut(s) 280, 312, 690, 722
FaqI GGGAC 1 cut(s) 242
FatI CATG 5 cut(s) 65, 336, 408, 549, 1071
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 5 cut(s) 38, 130, 149, 891, 1149
FokI GGATG 2 cut(s) 149, 260
Fsp4HI GCNGC 5 cut(s) 38, 130, 149, 891, 1149
FspBI CTAG 4 cut(s) 450, 855, 1019, 1143
GluI GCNGC 5 cut(s) 38, 130, 149, 891, 1149
GsuI CTGGAG 1 cut(s) 630
HaeIII GGCC 5 cut(s) 80, 180, 696, 872, 1192
HapII CCGG 2 cut(s) 177, 1065
HgaI GACGC 3 cut(s) 199, 1077, 1181
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 5 cut(s) 69, 340, 412, 553, 1075
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 5 cut(s) 61, 138, 241, 806, 944
HpaII CCGG 2 cut(s) 177, 1065
HphI GGTGA 3 cut(s) 166, 565, 1094
Hpy166II GTNNAC 4 cut(s) 282, 342, 938, 1171
Hpy188I TCNGA 4 cut(s) 304, 423, 514, 1008
Hpy188III TCNNGA 3 cut(s) 245, 980, 1065
Hpy8I GTNNAC 4 cut(s) 282, 342, 938, 1171
Hpy99I CGWCG 1 cut(s) 1028
HpyAV CCTTC 6 cut(s) 306, 343, 511, 547, 550, 1045
HpyCH4III ACNGT 2 cut(s) 73, 427
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 7 cut(s) 313, 355, 408, 797, 829, 893, 926
HpyF10VI GCNNNNNNNGC 5 cut(s) 168, 177, 319, 1148, 1181
HpyF3I CTNAG 1 cut(s) 1007
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 5 cut(s) 69, 340, 412, 553, 1075
Kpn2I TCCGGA 1 cut(s) 1064
Kzo9I GATC 4 cut(s) 157, 616, 739, 859
LmnI GCTCC 3 cut(s) 49, 775, 971
Lsp1109I GCAGC 5 cut(s) 49, 116, 160, 877, 1135
LweI GCATC 5 cut(s) 171, 238, 331, 701, 877
MaeI CTAG 4 cut(s) 450, 855, 1019, 1143
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 3 cut(s) 571, 880, 1153
MalI GATC 4 cut(s) 159, 618, 741, 861
MboI GATC 4 cut(s) 157, 616, 739, 859
MflI RGATCY 1 cut(s) 739
MlsI TGGCCA 2 cut(s) 80, 696
MluCI AATT 3 cut(s) 777, 865, 900
MluNI TGGCCA 2 cut(s) 80, 696
MlyI GAGTC 1 cut(s) 815
MmeI TCCRAC 1 cut(s) 541
Mox20I TGGCCA 2 cut(s) 80, 696
Mph1103I ATGCAT 1 cut(s) 928
MroI TCCGGA 1 cut(s) 1064
MroXI GAANNNNTTC 1 cut(s) 1205
MscI TGGCCA 2 cut(s) 80, 696
MseI TTAA 3 cut(s) 716, 903, 1112
Msp20I TGGCCA 2 cut(s) 80, 696
MspI CCGG 2 cut(s) 177, 1065
MspR9I CCNGG 1 cut(s) 737
Mva1269I GAATGC 1 cut(s) 463
MvaI CCWGG 1 cut(s) 737
MwoI GCNNNNNNNGC 5 cut(s) 168, 177, 319, 1148, 1181
NcoI CCATGG 1 cut(s) 65
NdeII GATC 4 cut(s) 157, 616, 739, 859
NlaIII CATG 5 cut(s) 69, 340, 412, 553, 1075
NlaIV GGNNCC 4 cut(s) 372, 535, 741, 1063
NmuCI GTSAC 2 cut(s) 571, 1153
NsiI ATGCAT 1 cut(s) 928
NspI RCATGY 2 cut(s) 412, 1075
PaeI GCATGC 1 cut(s) 1075
PceI AGGCCT 1 cut(s) 1192
PctI GAATGC 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 1205
PfeI GAWTC 4 cut(s) 61, 138, 241, 944
PflMI CCANNNNNTGG 1 cut(s) 779
PkrI GCNGC 5 cut(s) 39, 131, 150, 892, 1150
PleI GAGTC 1 cut(s) 814
PpsI GAGTC 1 cut(s) 814
PpuMI RGGWCCY 1 cut(s) 293
Psp5II RGGWCCY 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 735
PspGI CCWGG 1 cut(s) 735
PspN4I GGNNCC 4 cut(s) 372, 535, 741, 1063
PspPI GGNCC 1 cut(s) 293
PspPPI RGGWCCY 1 cut(s) 293
PsrI GAACNNNNNNTAC 2 cut(s) 639, 671
PstI CTGCAG 1 cut(s) 831
PsuI RGATCY 1 cut(s) 739
RsaI GTAC 3 cut(s) 281, 384, 648
RsaNI GTAC 3 cut(s) 280, 383, 647
SaqAI TTAA 3 cut(s) 716, 903, 1112
SatI GCNGC 5 cut(s) 38, 130, 149, 891, 1149
Sau3AI GATC 4 cut(s) 157, 616, 739, 859
Sau96I GGNCC 1 cut(s) 293
SbfI CCTGCAGG 1 cut(s) 831
SchI GAGTC 1 cut(s) 815
ScrFI CCNGG 1 cut(s) 737
SdaI CCTGCAGG 1 cut(s) 831
SfaNI GCATC 5 cut(s) 171, 238, 331, 701, 877
SfcI CTRYAG 1 cut(s) 827
SinI GGWCC 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 980
SmoI CTYRAG 1 cut(s) 980
SphI GCATGC 1 cut(s) 1075
Sse8387I CCTGCAGG 1 cut(s) 831
Sse9I AATT 3 cut(s) 777, 865, 900
SseBI AGGCCT 1 cut(s) 1192
SsiI CCGC 2 cut(s) 90, 202
SspI AATATT 1 cut(s) 350
SspMI CTAG 4 cut(s) 450, 855, 1019, 1143
StuI AGGCCT 1 cut(s) 1192
StyD4I CCNGG 1 cut(s) 735
StyI CCWWGG 2 cut(s) 65, 81
TaaI ACNGT 2 cut(s) 73, 427
TaiI ACGT 1 cut(s) 195
TaqI TCGA 5 cut(s) 99, 117, 141, 709, 1038
TasI AATT 3 cut(s) 777, 865, 900
TatI WGTACW 3 cut(s) 279, 382, 646
TfiI GAWTC 4 cut(s) 61, 138, 241, 944
Tru1I TTAA 3 cut(s) 716, 903, 1112
Tru9I TTAA 3 cut(s) 716, 903, 1112
TscAI CASTG 3 cut(s) 173, 613, 1191
TseFI GTSAC 2 cut(s) 571, 1153
TseI GCWGC 5 cut(s) 37, 129, 148, 890, 1148
Tsp45I GTSAC 2 cut(s) 571, 1153
TspDTI ATGAA 3 cut(s) 325, 493, 663
TspGWI ACGGA 1 cut(s) 1063
TspRI CASTG 3 cut(s) 173, 613, 1191
Van91I CCANNNNNTGG 1 cut(s) 779
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 1 cut(s) 865
XceI RCATGY 2 cut(s) 412, 1075
XmnI GAANNNNTTC 1 cut(s) 1205
XspI CTAG 4 cut(s) 450, 855, 1019, 1143
Zsp2I ATGCAT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.