Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001148

Physical Location & Seq

Genomic Coordinates Reverse (-)

25830833 .. 25833143

Gene Structure 2311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAGATAAAGGAAAATGGAGAAGAAGAGAAGCAGATTGTGAATCCTTGGAAGGTGGAGGCCAAAGAAGGCGGCAAAATTGACTACGATAAGCTCATAGATCAGTTCGGTTGCCAGAAGATCGATCAGTCTCTTGTCGACCATGTCCGCCGTCTCACCTCACGTACTCCGCACGTTTTCCTCCGTCGTGACGTCGTCTTCGCTCACCGATATTTGCAAGATGCCTTCAAGGTCCCTCTTGTTATACAACTTACCGACGACGAGAAATGTATGTGGAAAAATCCCACAGTTGAAGAAAGCCAGAGCCTTGCAAGGGAAAATGCTAAAGACATCATTGCTTGTGGTTTTGACGTAACAAGAACCTTGATCTTCTCTGATTTTGATTATGTTGGTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004830 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006436 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

132

Amino Acids

15.31

Weight (kDa)

5.22

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04600 AT3G04600 AT3G04600
fragaria_vesca	FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_5g27321
malus_domestica	MD04G1236500.v1.1 MD12G1255800.v1.1
prunus_persica	Prupe.7G057000_v2.0.a1 Prupe.7G057800_v2.0.a1
pyrus_communis	pycom04g21040 pycom12g23440
rosa_chinensis	RchiOBHm_Chr3g0493481 RchiOBHm_Chr7g0219201 RchiOBHm_Chr7g0219221 RchiOBHm_Chr7g0223011
rosa_laevigata	RLG00000002003 RLG00000002302 RLG00000002303 RLG00000022713
rosa_multiflora	Rmu_sc0000868.1_g000014 Rmu_sc0006373.1_g000002 Rmu_sc0006514.1_g000024 Rmu_sc0007422.1_g000005 Rmu_sc0009785.1_g000024 Rmu_sc0039697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234440 Rroxscaffold_3G00236350 Rroxscaffold_3G00237890 Rroxscaffold_3G00237970 Rroxscaffold_3G00238030 Rroxscaffold_3G00238960 Rroxscaffold_3G00238970 Rroxscaffold_5G00377610 Rroxscaffold_6G00391570 Rroxscaffold_7G00199590 Rroxscaffold_7G00199600
rosa_rugosa	Rorug07G0177500 Rorug07G0177500 Rorug07G0212800
rosa_samantha	Rh3AG310200 Rh3BG346300 Rh3CG344200 Rh3DG345400 Rh7AG319000 Rh7AG326700 Rh7AG357900 Rh7BG310900 Rh7BG346100 Rh7CG376000 Rh7DG318100 Rh7DG318200 Rh7DG352800
rosa_wichuraiana	Rw3G027260 Rw7G027160 Rw7G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	138
AciI	CCGC	3 cut(s)	72, 148, 170
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	2 cut(s)	229, 293
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw26I	GTCTC	2 cut(s)	135, 158
AoxI	GGCC	1 cut(s)	60
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	2 cut(s)	148, 197
AvaII	GGWCC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	190
BceAI	ACGGC	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	135, 158
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	234
BmsI	GCATC	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	190
Bsa29I	ATCGAT	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse3DI	GCAATG	1 cut(s)	333
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMI	GCAATG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	62
BshVI	ATCGAT	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	2 cut(s)	135, 158
BsmBI	CGTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	62
Bsp143I	GATC	4 cut(s)	100, 120, 124, 366
BspACI	CCGC	3 cut(s)	72, 148, 170
BspANI	GGCC	1 cut(s)	62
BspDI	ATCGAT	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	4 cut(s)	100, 120, 124, 366
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	164
BstKTI	GATC	4 cut(s)	103, 123, 127, 369
BstMAI	GTCTC	2 cut(s)	135, 158
BstMBI	GATC	4 cut(s)	100, 120, 124, 366
BstV2I	GAAGAC	1 cut(s)	190
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	62
BsuTUI	ATCGAT	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	232
ClaI	ATCGAT	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	4 cut(s)	62, 94, 300, 306
CviKI_1	RGCY	4 cut(s)	62, 94, 300, 306
CviQI	GTAC	1 cut(s)	165
DpnI	GATC	4 cut(s)	102, 122, 126, 368
DpnII	GATC	4 cut(s)	100, 120, 124, 366
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	1 cut(s)	146
FaiI	YATR	5 cut(s)	98, 144, 245, 272, 387
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	73
Fsp4HI	GCNGC	1 cut(s)	73
GluI	GCNGC	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	62
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	1 cut(s)	43
HphI	GGTGA	2 cut(s)	148, 197
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	1 cut(s)	376
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	4 cut(s)	189, 197, 260, 263
HpyAV	CCTTC	3 cut(s)	46, 62, 235
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	4 cut(s)	163, 174, 192, 351
HpyCH4V	TGCA	2 cut(s)	217, 311
HpySE526I	ACGT	4 cut(s)	163, 174, 192, 351
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	146
Kzo9I	GATC	4 cut(s)	100, 120, 124, 366
LpnPI	CCDG	2 cut(s)	128, 314
LweI	GCATC	1 cut(s)	211
MaeII	ACGT	4 cut(s)	163, 174, 192, 351
MaeIII	GTNAC	2 cut(s)	188, 352
MalI	GATC	4 cut(s)	102, 122, 126, 368
MboI	GATC	4 cut(s)	100, 120, 124, 366
MboII	GAAGA	6 cut(s)	35, 38, 130, 190, 305, 361
MluCI	AATT	1 cut(s)	78
MnlI	CCTC	4 cut(s)	52, 169, 191, 246
NdeII	GATC	4 cut(s)	100, 120, 124, 366
NlaIII	CATG	1 cut(s)	146
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	43
PflFI	GACNNNGTC	2 cut(s)	143, 194
PkrI	GCNGC	1 cut(s)	74
Ppu21I	YACGTR	1 cut(s)	164
PpuMI	RGGWCCY	1 cut(s)	232
Psp5II	RGGWCCY	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	232
PspPPI	RGGWCCY	1 cut(s)	232
PsyI	GACNNNGTC	2 cut(s)	143, 194
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
SalI	GTCGAC	1 cut(s)	137
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	4 cut(s)	100, 120, 124, 366
Sau96I	GGNCC	1 cut(s)	232
SetI	ASST	9 cut(s)	57, 96, 161, 166, 177, 195, 234, 354, 365
SfaNI	GCATC	1 cut(s)	211
SinI	GGWCC	1 cut(s)	232
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	3 cut(s)	72, 148, 170
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	4 cut(s)	166, 177, 195, 354
TaqI	TCGA	2 cut(s)	123, 138
TasI	AATT	1 cut(s)	78
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	188
TspGWI	ACGGA	1 cut(s)	173
Tth111I	GACNNNGTC	2 cut(s)	143, 194
VpaK11BI	GGWCC	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	138
ZraI	GACGTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.