Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001148

Physical Location & Seq

Genomic Coordinates Forward (+)

37619121 .. 37619423

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG318100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGTGACTCCATGGAGGGTGGAGGACAAAGATGGCAGCAAAATCAATTACGATATGCTTATTAACCAGTTTGGTTGCCAGAGGCTCGATCAATCTCTTAACGACCAGGTCCGCCGATTCACATCATGTGCTTGGCACGTCTTCCTCCGTTGTGGGGTTTTCTTAGCCCACCGGGACTTCAATGAGATTCTAGATGCTTATGAGAAAGGAGATAAGTTCTATTTGTACACAAGAAGAGGGCCTTCTTCTGAGTCTTTGCATTTGGCACATCTCATCCCCTTCATGTTCACTAAATATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

100

Amino Acids

11.91

Weight (kDa)

7.76

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04600 AT3G04600 AT3G04600
fragaria_vesca	FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_5g27321
malus_domestica	MD04G1236500.v1.1 MD12G1255800.v1.1
prunus_persica	Prupe.7G057000_v2.0.a1 Prupe.7G057800_v2.0.a1
pyrus_communis	pycom04g21040 pycom12g23440
rosa_chinensis	RchiOBHm_Chr3g0493481 RchiOBHm_Chr7g0219201 RchiOBHm_Chr7g0219221 RchiOBHm_Chr7g0223011
rosa_laevigata	RLG00000002003 RLG00000002302 RLG00000002303 RLG00000022713
rosa_multiflora	Rmu_sc0000868.1_g000014 Rmu_sc0006373.1_g000002 Rmu_sc0006514.1_g000024 Rmu_sc0007422.1_g000005 Rmu_sc0009785.1_g000024 Rmu_sc0039697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234440 Rroxscaffold_3G00236350 Rroxscaffold_3G00237890 Rroxscaffold_3G00237970 Rroxscaffold_3G00238030 Rroxscaffold_3G00238960 Rroxscaffold_3G00238970 Rroxscaffold_5G00377610 Rroxscaffold_6G00391570 Rroxscaffold_7G00199590 Rroxscaffold_7G00199600
rosa_rugosa	Rorug07G0177500 Rorug07G0177500 Rorug07G0212800
rosa_samantha	Rh3AG310200 Rh3BG346300 Rh3CG344200 Rh3DG345400 Rh7AG319000 Rh7AG326700 Rh7AG357900 Rh7BG310900 Rh7BG346100 Rh7CG376000 Rh7DG318100 Rh7DG318200 Rh7DG352800
rosa_wichuraiana	Rw3G027260 Rw7G027160 Rw7G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	112
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	181
AjiI	CACGTC	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	105
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	36
AspS9I	GGNCC	2 cut(s)	109, 239
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	107
BcnI	CCSGG	1 cut(s)	173
BfaI	CTAG	1 cut(s)	191
BisI	GCNGC	1 cut(s)	37
BlsI	GCNGC	1 cut(s)	38
Bme1390I	CCNGG	2 cut(s)	107, 173
Bme18I	GGWCC	1 cut(s)	109
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	109, 239
BmrFI	CCNGG	2 cut(s)	107, 173
BmsI	GCATC	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	133
BpuMI	CCSGG	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	121
BsaJI	CCNNGG	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	67
Bse8I	GATNNNNATC	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	11
BseGI	GGATG	1 cut(s)	273
BseJI	GATNNNNATC	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	48
BshFI	GGCC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	241
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	1 cut(s)	88
Bsp19I	CCATGG	1 cut(s)	11
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	1 cut(s)	241
BsrGI	TGTACA	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	107
Bst6I	CTCTTC	1 cut(s)	229
BstAUI	TGTACA	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	163, 249
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	273
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	2 cut(s)	105, 171
BstV1I	GCAGC	1 cut(s)	48
BstV2I	GAAGAC	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	11
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	273
Cfr13I	GGNCC	2 cut(s)	109, 239
CsiI	ACCWGGT	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	3 cut(s)	12, 126, 283
CviJI	RGCY	3 cut(s)	85, 167, 241
CviKI_1	RGCY	3 cut(s)	85, 167, 241
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	2 cut(s)	163, 249
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
EciI	GGCGGA	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	3 cut(s)	15, 129, 286
FaiI	YATR	5 cut(s)	13, 56, 127, 201, 284
FalI	AAGNNNNNCTT	2 cut(s)	226, 258
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	3 cut(s)	11, 125, 282
Fnu4HI	GCNGC	1 cut(s)	37
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	37
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	1 cut(s)	172
Hin1II	CATG	3 cut(s)	15, 129, 286
HinfI	GANTC	4 cut(s)	7, 117, 187, 251
HpaII	CCGG	1 cut(s)	172
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	228, 288
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	2 cut(s)	228, 288
HpyAV	CCTTC	2 cut(s)	252, 289
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	1 cut(s)	259
HpyF3I	CTNAG	2 cut(s)	163, 249
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	15, 129, 286
Kzo9I	GATC	1 cut(s)	88
LpnPI	CCDG	5 cut(s)	80, 92, 92, 119, 185
Lsp1109I	GCAGC	1 cut(s)	48
LweI	GCATC	1 cut(s)	184
MabI	ACCWGGT	1 cut(s)	105
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	3 cut(s)	133, 237, 246
MluCI	AATT	1 cut(s)	46
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	5 cut(s)	9, 16, 75, 155, 230
MseI	TTAA	2 cut(s)	63, 99
MspI	CCGG	1 cut(s)	172
MspR9I	CCNGG	2 cut(s)	107, 173
MvaI	CCWGG	1 cut(s)	107
NciI	CCSGG	1 cut(s)	173
NcoI	CCATGG	1 cut(s)	11
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	3 cut(s)	15, 129, 286
NmuCI	GTSAC	1 cut(s)	4
PfeI	GAWTC	2 cut(s)	117, 187
PflFI	GACNNNGTC	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	38
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspPI	GGNCC	2 cut(s)	109, 239
PsyI	GACNNNGTC	1 cut(s)	107
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SaqAI	TTAA	2 cut(s)	63, 99
SatI	GCNGC	1 cut(s)	37
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	2 cut(s)	109, 239
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	2 cut(s)	107, 173
SetI	ASST	2 cut(s)	111, 141
SexAI	ACCWGGT	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	184
SinI	GGWCC	1 cut(s)	109
Sse9I	AATT	1 cut(s)	46
SsiI	CCGC	1 cut(s)	112
SspI	AATATT	1 cut(s)	296
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	105, 171
StyI	CCWWGG	1 cut(s)	11
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	87
TasI	AATT	1 cut(s)	46
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	2 cut(s)	117, 187
Tru1I	TTAA	2 cut(s)	63, 99
Tru9I	TTAA	2 cut(s)	63, 99
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	36
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	271
TspGWI	ACGGA	1 cut(s)	137
Tth111I	GACNNNGTC	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	109
XbaI	TCTAGA	1 cut(s)	190
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.