Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001148

Physical Location & Seq

Genomic Coordinates Reverse (-)

25599482 .. 25606169

Gene Structure 6688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGACCCGAGATGTTGCTCCACGCATTGGATATCACAAACCTGCTTTAATCGAGTCTCTATTCTTCCCCGCCCTCCAGGGAGAAACGGGAAAAATGTCGGCTAGTGATCCAAATTCTGCCATCTATGTAACTGATTCTGCAAAGGATATTAAGAGCAAGATAAACAAGTTTGCATTTTCAGGGGGACAAGATATAATAGAGAAACACAGGGAGTTGGGAGCAAATCTCGAGGAGTATGGTGCAGGTCGAATGTTGACGGAAAGTGAAGCAGAGGCTCATTCAAGTTTTGACAGAAATTGTGGAGAGACATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004830 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006436 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

104

Amino Acids

11.37

Weight (kDa)

5.31

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1b	PF00579	1 - 66	5.4e-09	tRNA synthetases class I (W and Y)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04600 AT3G04600 AT3G04600
fragaria_vesca	FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_5g27321
malus_domestica	MD04G1236500.v1.1 MD12G1255800.v1.1
prunus_persica	Prupe.7G057000_v2.0.a1 Prupe.7G057800_v2.0.a1
pyrus_communis	pycom04g21040 pycom12g23440
rosa_chinensis	RchiOBHm_Chr3g0493481 RchiOBHm_Chr7g0219201 RchiOBHm_Chr7g0219221 RchiOBHm_Chr7g0223011
rosa_laevigata	RLG00000002003 RLG00000002302 RLG00000002303 RLG00000022713
rosa_multiflora	Rmu_sc0000868.1_g000014 Rmu_sc0006373.1_g000002 Rmu_sc0006514.1_g000024 Rmu_sc0007422.1_g000005 Rmu_sc0009785.1_g000024 Rmu_sc0039697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234440 Rroxscaffold_3G00236350 Rroxscaffold_3G00237890 Rroxscaffold_3G00237970 Rroxscaffold_3G00238030 Rroxscaffold_3G00238960 Rroxscaffold_3G00238970 Rroxscaffold_5G00377610 Rroxscaffold_6G00391570 Rroxscaffold_7G00199590 Rroxscaffold_7G00199600
rosa_rugosa	Rorug07G0177500 Rorug07G0177500 Rorug07G0212800
rosa_samantha	Rh3AG310200 Rh3BG346300 Rh3CG344200 Rh3DG345400 Rh7AG319000 Rh7AG326700 Rh7AG357900 Rh7BG310900 Rh7BG346100 Rh7CG376000 Rh7DG318100 Rh7DG318200 Rh7DG352800
rosa_wichuraiana	Rw3G027260 Rw7G027160 Rw7G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	49, 233
AccB7I	CCANNNNNTGG	1 cut(s)	26
AciI	CCGC	1 cut(s)	69
AclWI	GGATC	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	282
AjnI	CCWGG	1 cut(s)	75
Alw26I	GTCTC	2 cut(s)	60, 299
AlwI	GGATC	1 cut(s)	101
Ama87I	CYCGRG	2 cut(s)	6, 227
ApoI	RAATTY	1 cut(s)	112
AvaI	CYCGRG	2 cut(s)	6, 227
BccI	CCATC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	77
BcoDI	GTCTC	2 cut(s)	60, 299
BfaI	CTAG	1 cut(s)	102
BfuAI	ACCTGC	2 cut(s)	49, 233
Bme1390I	CCNGG	1 cut(s)	77
BmeT110I	CYCGRG	2 cut(s)	6, 227
BmrFI	CCNGG	1 cut(s)	77
BplI	GAGNNNNNCTC	2 cut(s)	210, 242
BpmI	CTGGAG	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	245
BsgI	GTGCAG	1 cut(s)	261
BsiHKCI	CYCGRG	2 cut(s)	6, 227
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	2 cut(s)	60, 299
BsmFI	GGGAC	1 cut(s)	198
BsoBI	CYCGRG	2 cut(s)	6, 227
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	1 cut(s)	69
BspMI	ACCTGC	2 cut(s)	49, 233
BspPI	GGATC	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	77
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	2 cut(s)	60, 299
BstMBI	GATC	1 cut(s)	106
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	75
BveI	ACCTGC	2 cut(s)	49, 233
CviJI	RGCY	2 cut(s)	101, 275
CviKI_1	RGCY	2 cut(s)	101, 275
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eco32I	GATATC	1 cut(s)	32
Eco88I	CYCGRG	2 cut(s)	6, 227
EcoRII	CCWGG	1 cut(s)	75
EcoRV	GATATC	1 cut(s)	32
FaiI	YATR	3 cut(s)	126, 194, 237
FaqI	GGGAC	1 cut(s)	198
FauI	CCCGC	1 cut(s)	76
FspBI	CTAG	1 cut(s)	102
GsuI	CTGGAG	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HinfI	GANTC	2 cut(s)	53, 134
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	1 cut(s)	255
HpyCH4V	TGCA	3 cut(s)	140, 173, 242
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	2 cut(s)	22, 218
LpnPI	CCDG	6 cut(s)	54, 62, 89, 165, 193, 228
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	1 cut(s)	55
MluCI	AATT	2 cut(s)	112, 295
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	3 cut(s)	83, 223, 265
MseI	TTAA	2 cut(s)	47, 150
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
NdeII	GATC	1 cut(s)	106
PaeR7I	CTCGAG	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	134
PflMI	CCANNNNNTGG	1 cut(s)	26
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	47, 150
Sau3AI	GATC	1 cut(s)	106
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	77
SetI	ASST	2 cut(s)	43, 247
Sfr274I	CTCGAG	1 cut(s)	227
SlaI	CTCGAG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	2 cut(s)	112, 295
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	75
TaqI	TCGA	3 cut(s)	51, 228, 247
TasI	AATT	2 cut(s)	112, 295
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	2 cut(s)	47, 150
Tru9I	TTAA	2 cut(s)	47, 150
TspGWI	ACGGA	1 cut(s)	272
Van91I	CCANNNNNTGG	1 cut(s)	26
XapI	RAATTY	1 cut(s)	112
XhoI	CTCGAG	1 cut(s)	227
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.