Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001148

Physical Location & Seq

Genomic Coordinates Forward (+)

18567155 .. 18567823

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27321.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAGAAGAGAGGGGAAGAGGCACTGGAGATTCAAGACAATGGAGAAGCAGAGCGGCAGATAGTGACTCCATGGAAGGTAGAGGCGAAAGATGGCAACAAAATCGATTACGATAAGCTTGTTAACCAGTTTGGTTGCCAGAGGCTTGATCAGTCTCTTATTGACCGGGGTACACAGACTCACACCAAGTACTCCACACGTCTTCCTCCACCGCGGGGAAGAGGGCCTTCTTCTGAGTCTTTGCATTTGGGGCATCTCATCCCCTTCATGTTCGCTAAATATTTGCAAGATGCCTTCAAGGTGCCTCTGGTAATACAGCTCACTGATGACGAGAAATGCATGTGGCCGGAAAAATCTCACCGTGGAAGAAAGCCAAAGACTTGCGAGGGAGAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004830 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006436 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

133

Amino Acids

15.17

Weight (kDa)

6.9

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04600 AT3G04600 AT3G04600
fragaria_vesca	FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_5g27321
malus_domestica	MD04G1236500.v1.1 MD12G1255800.v1.1
prunus_persica	Prupe.7G057000_v2.0.a1 Prupe.7G057800_v2.0.a1
pyrus_communis	pycom04g21040 pycom12g23440
rosa_chinensis	RchiOBHm_Chr3g0493481 RchiOBHm_Chr7g0219201 RchiOBHm_Chr7g0219221 RchiOBHm_Chr7g0223011
rosa_laevigata	RLG00000002003 RLG00000002302 RLG00000002303 RLG00000022713
rosa_multiflora	Rmu_sc0000868.1_g000014 Rmu_sc0006373.1_g000002 Rmu_sc0006514.1_g000024 Rmu_sc0007422.1_g000005 Rmu_sc0009785.1_g000024 Rmu_sc0039697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234440 Rroxscaffold_3G00236350 Rroxscaffold_3G00237890 Rroxscaffold_3G00237970 Rroxscaffold_3G00238030 Rroxscaffold_3G00238960 Rroxscaffold_3G00238970 Rroxscaffold_5G00377610 Rroxscaffold_6G00391570 Rroxscaffold_7G00199590 Rroxscaffold_7G00199600
rosa_rugosa	Rorug07G0177500 Rorug07G0177500 Rorug07G0212800
rosa_samantha	Rh3AG310200 Rh3BG346300 Rh3CG344200 Rh3DG345400 Rh7AG319000 Rh7AG326700 Rh7AG357900 Rh7BG310900 Rh7BG346100 Rh7CG376000 Rh7DG318100 Rh7DG318200 Rh7DG352800
rosa_wichuraiana	Rw3G027260 Rw7G027160 Rw7G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	301
AccBSI	CCGCTC	1 cut(s)	55
AccII	CGCG	1 cut(s)	214
AciI	CCGC	3 cut(s)	55, 212, 214
AcoI	YGGCCR	1 cut(s)	344
AfaI	GTAC	2 cut(s)	172, 191
AfiI	CCNNNNNNNGG	1 cut(s)	215
AflIII	ACRYGT	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	35, 298
AjiI	CACGTC	1 cut(s)	200
AluBI	AGCT	2 cut(s)	118, 319
AluI	AGCT	2 cut(s)	118, 319
Alw26I	GTCTC	1 cut(s)	159
AoxI	GGCC	2 cut(s)	224, 344
AspS9I	GGNCC	1 cut(s)	224
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	350
BanI	GGYRCC	1 cut(s)	301
BbsI	GAAGAC	1 cut(s)	194
BccI	CCATC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BclI	TGATCA	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	159
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
BmcAI	AGTACT	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	167
BmgBI	CACGTC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	2 cut(s)	262, 280
BpiI	GAAGAC	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	47
BpuMI	CCSGG	1 cut(s)	167
Bsa29I	ATCGAT	1 cut(s)	105
BsaJI	CCNNGG	4 cut(s)	71, 166, 212, 361
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	2 cut(s)	30, 127
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	4 cut(s)	71, 166, 212, 361
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	2 cut(s)	30, 127
Bsh1236I	CGCG	1 cut(s)	214
BshFI	GGCC	2 cut(s)	226, 346
BshNI	GGYRCC	1 cut(s)	301
BshVI	ATCGAT	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	166, 347
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	159
BsmI	GAATGC	1 cut(s)	398
BsnI	GGCC	2 cut(s)	226, 346
Bsp143I	GATC	1 cut(s)	148
Bsp19I	CCATGG	1 cut(s)	71
BspACI	CCGC	3 cut(s)	55, 212, 214
BspANI	GGCC	2 cut(s)	226, 346
BspCNI	CTCAG	1 cut(s)	226
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	301
BsrBI	CCGCTC	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	30, 127
BssECI	CCNNGG	4 cut(s)	71, 166, 212, 361
BssMI	GATC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	3 cut(s)	2, 12, 214
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	3 cut(s)	71, 212, 361
BstF5I	GGATG	1 cut(s)	258
BstFNI	CGCG	1 cut(s)	214
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	194
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	226, 346
BsuTUI	ATCGAT	1 cut(s)	105
BtgI	CCRYGG	3 cut(s)	71, 212, 361
BtrI	CACGTC	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	258
BtsIMutI	CAGTG	2 cut(s)	23, 321
Cfr13I	GGNCC	1 cut(s)	224
Cfr42I	CCGCGG	1 cut(s)	215
ClaI	ATCGAT	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	171, 190
CviAII	CATG	3 cut(s)	72, 268, 340
CviJI	RGCY	6 cut(s)	118, 145, 226, 319, 346, 373
CviKI_1	RGCY	6 cut(s)	118, 145, 226, 319, 346, 373
CviQI	GTAC	2 cut(s)	171, 190
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	344
Eam1104I	CTCTTC	3 cut(s)	2, 12, 214
EarI	CTCTTC	3 cut(s)	2, 12, 214
Eco130I	CCWWGG	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	71
EcoT22I	ATGCAT	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	3 cut(s)	75, 271, 343
FaiI	YATR	3 cut(s)	73, 269, 341
FalI	AAGNNNNNCTT	2 cut(s)	211, 243
FatI	CATG	3 cut(s)	71, 267, 339
FauI	CCCGC	1 cut(s)	207
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	56
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	56
GluI	GCNGC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	226, 346
HapII	CCGG	2 cut(s)	166, 347
Hin1II	CATG	3 cut(s)	75, 271, 343
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	4 cut(s)	31, 67, 178, 236
HpaI	GTTAAC	1 cut(s)	124
HpaII	CCGG	2 cut(s)	166, 347
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	2 cut(s)	124, 173
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	2 cut(s)	124, 173
HpyAV	CCTTC	4 cut(s)	70, 237, 274, 304
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	3 cut(s)	244, 286, 339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	3 cut(s)	75, 271, 343
Ksp22I	TGATCA	1 cut(s)	148
KspAI	GTTAAC	1 cut(s)	124
KspI	CCGCGG	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	148
LpnPI	CCDG	6 cut(s)	11, 140, 152, 179, 293, 360
LweI	GCATC	2 cut(s)	262, 280
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	1 cut(s)	150
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	1 cut(s)	148
MboII	GAAGA	6 cut(s)	19, 29, 194, 222, 231, 378
MlyI	GAGTC	3 cut(s)	61, 172, 245
MnlI	CCTC	8 cut(s)	5, 13, 76, 135, 215, 216, 315, 379
Mph1103I	ATGCAT	1 cut(s)	341
MseI	TTAA	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	214
MspI	CCGG	2 cut(s)	166, 347
MspR9I	CCNGG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	398
MvnI	CGCG	1 cut(s)	214
MwoI	GCNNNNNNNGC	1 cut(s)	250
NciI	CCSGG	1 cut(s)	167
NcoI	CCATGG	1 cut(s)	71
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	3 cut(s)	75, 271, 343
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	64
NsiI	ATGCAT	1 cut(s)	341
NspI	RCATGY	1 cut(s)	343
PctI	GAATGC	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	57
PleI	GAGTC	3 cut(s)	61, 172, 244
PpsI	GAGTC	3 cut(s)	61, 172, 244
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	224
RsaI	GTAC	2 cut(s)	172, 191
RsaNI	GTAC	2 cut(s)	171, 190
SacII	CCGCGG	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	224
ScaI	AGTACT	1 cut(s)	191
SchI	GAGTC	3 cut(s)	61, 172, 245
ScrFI	CCNGG	1 cut(s)	167
SetI	ASST	5 cut(s)	81, 120, 202, 303, 321
SfaNI	GCATC	2 cut(s)	262, 280
Sfr303I	CCGCGG	1 cut(s)	215
SgrBI	CCGCGG	1 cut(s)	215
SsiI	CCGC	3 cut(s)	55, 212, 214
SspI	AATATT	1 cut(s)	281
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	105
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	30, 328
TseFI	GTSAC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	256
TspRI	CASTG	2 cut(s)	30, 328
XceI	RCATGY	1 cut(s)	343
ZrmI	AGTACT	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.