Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006373.1

Orthogroup ID

OG0001148

Physical Location & Seq

Genomic Coordinates Reverse (-)

19879 .. 23347

Gene Structure 3469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006373.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atggttagggtcggaaagtgtgtcacttataataaggttgttggcatatttggtttcaccggtgaagatcatataggaaaagtcagttttcctcctgtacagctaccgtcgagacctcctcctccttcttctgagcctgagcagtcagacagcaacacacccagacccagggcaatggatataaaggaaaacggagaagaagagcagcagattgtgaatccttggaaggtggaggccaaagaaggcggcaaaattgactatgataagctcatagatcaatttggttgccagaggatcgatcagtctcttgtcgaccgtgtccgccgtctcacctcacgtgctccgcacataaacaagtttgcattttcaggtggacaagatacaatagagaaacacagagagttgggagcaaatctcgaggtagacattccatataaatatctgagattttttctggatgatgacatcgagcttgcttatataggaaaggagtatggtgcaggtcgaatgttgacaggggaagtgaagcagaggctcattcaagttttgacagaaattgtggagagacatcgtagggctagagctgccgtcaccgatgagatggtggacgcatttatggcagtgaggcccctcccaaacatgttcaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004830 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006436 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

216

Amino Acids

24.57

Weight (kDa)

6.14

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04600 AT3G04600 AT3G04600
fragaria_vesca	FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_5g27321
malus_domestica	MD04G1236500.v1.1 MD12G1255800.v1.1
prunus_persica	Prupe.7G057000_v2.0.a1 Prupe.7G057800_v2.0.a1
pyrus_communis	pycom04g21040 pycom12g23440
rosa_chinensis	RchiOBHm_Chr3g0493481 RchiOBHm_Chr7g0219201 RchiOBHm_Chr7g0219221 RchiOBHm_Chr7g0223011
rosa_laevigata	RLG00000002003 RLG00000002302 RLG00000002303 RLG00000022713
rosa_multiflora	Rmu_sc0000868.1_g000014 Rmu_sc0006373.1_g000002 Rmu_sc0006514.1_g000024 Rmu_sc0007422.1_g000005 Rmu_sc0009785.1_g000024 Rmu_sc0039697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234440 Rroxscaffold_3G00236350 Rroxscaffold_3G00237890 Rroxscaffold_3G00237970 Rroxscaffold_3G00238030 Rroxscaffold_3G00238960 Rroxscaffold_3G00238970 Rroxscaffold_5G00377610 Rroxscaffold_6G00391570 Rroxscaffold_7G00199590 Rroxscaffold_7G00199600
rosa_rugosa	Rorug07G0177500 Rorug07G0177500 Rorug07G0212800
rosa_samantha	Rh3AG310200 Rh3BG346300 Rh3CG344200 Rh3DG345400 Rh7AG319000 Rh7AG326700 Rh7AG357900 Rh7BG310900 Rh7BG346100 Rh7CG376000 Rh7DG318100 Rh7DG318200 Rh7DG352800
rosa_wichuraiana	Rw3G027260 Rw7G027160 Rw7G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	30
Acc36I	ACCTGC	1 cut(s)	491
AccI	GTMKAC	2 cut(s)	312, 423
AciI	CCGC	3 cut(s)	246, 322, 344
AclWI	GGATC	1 cut(s)	302
AcvI	CACGTG	1 cut(s)	338
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	168
AflIII	ACRYGT	1 cut(s)	639
AgeI	ACCGGT	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	542, 646
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	4 cut(s)	103, 268, 472, 584
AluI	AGCT	4 cut(s)	103, 268, 472, 584
Alw21I	GWGCWC	1 cut(s)	343
Alw26I	GTCTC	4 cut(s)	106, 309, 332, 559
AlwI	GGATC	1 cut(s)	302
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	2 cut(s)	234, 626
ApeKI	GCWGC	2 cut(s)	205, 584
AsiGI	ACCGGT	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	627
AsuHPI	GGTGA	4 cut(s)	49, 74, 322, 583
AvaI	CYCGRG	1 cut(s)	416
BbrPI	CACGTG	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	343
BbvI	GCAGC	2 cut(s)	217, 571
BccI	CCATC	1 cut(s)	595
BceAI	ACGGC	2 cut(s)	309, 572
BciT130I	CCWGG	1 cut(s)	169
BcoDI	GTCTC	4 cut(s)	106, 309, 332, 559
BfaI	CTAG	1 cut(s)	579
BfuAI	ACCTGC	1 cut(s)	491
BisI	GCNGC	3 cut(s)	206, 247, 585
BlsI	GCNGC	3 cut(s)	207, 248, 586
Bme1390I	CCNGG	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	627
BmiI	GGNNCC	1 cut(s)	629
BmrFI	CCNGG	1 cut(s)	169
BplI	GAGNNNNNCTC	4 cut(s)	103, 135, 399, 431
Bpu10I	CCTNAGC	1 cut(s)	138
Bsa29I	ATCGAT	1 cut(s)	297
BsaAI	YACGTR	1 cut(s)	338
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	3 cut(s)	167, 168, 221
BsaWI	WCCGGW	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
Bse118I	RCCGGY	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	169
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	3 cut(s)	167, 168, 221
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	3 cut(s)	123, 129, 434
BseRI	GAGGAG	2 cut(s)	108, 111
BseXI	GCAGC	2 cut(s)	217, 571
BsgI	GTGCAG	1 cut(s)	519
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	2 cut(s)	236, 628
BshTI	ACCGGT	1 cut(s)	59
BshVI	ATCGAT	1 cut(s)	297
BsiEI	CGRYCG	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	343
BsiHKCI	CYCGRG	1 cut(s)	416
BsiSI	CCGG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	168
BsmAI	GTCTC	4 cut(s)	106, 309, 332, 559
BsmBI	CGTCTC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	236, 628
Bso31I	GGTCTC	1 cut(s)	106
BsoBI	CYCGRG	1 cut(s)	416
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp1407I	TGTACA	1 cut(s)	97
Bsp143I	GATC	4 cut(s)	67, 274, 294, 298
BspACI	CCGC	3 cut(s)	246, 322, 344
BspANI	GGCC	2 cut(s)	236, 628
BspCNI	CTCAG	3 cut(s)	124, 130, 435
BspDI	ATCGAT	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	629
BspMI	ACCTGC	1 cut(s)	491
BspPI	GGATC	1 cut(s)	302
BspQI	GCTCTTC	1 cut(s)	195
BspTNI	GGTCTC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	59
BsrGI	TGTACA	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	3 cut(s)	167, 168, 221
BssMI	GATC	4 cut(s)	67, 274, 294, 298
BssT1I	CCWWGG	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	2 cut(s)	108, 317
Bst6I	CTCTTC	1 cut(s)	195
BstAUI	TGTACA	1 cut(s)	97
BstBAI	YACGTR	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	3 cut(s)	132, 138, 443
BstF5I	GGATG	1 cut(s)	463
BstKTI	GATC	4 cut(s)	70, 277, 297, 301
BstMAI	GTCTC	4 cut(s)	106, 309, 332, 559
BstMBI	GATC	4 cut(s)	67, 274, 294, 298
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	2 cut(s)	584, 617
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	643
BstSCI	CCNGG	1 cut(s)	167
BstV1I	GCAGC	2 cut(s)	217, 571
BstXI	CCANNNNNNTGG	1 cut(s)	175
Bsu15I	ATCGAT	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	236, 628
BsuTUI	ATCGAT	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	463
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	1 cut(s)	627
BveI	ACCTGC	1 cut(s)	491
Cac8I	GCNNGC	1 cut(s)	474
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	627
ClaI	ATCGAT	1 cut(s)	297
CseI	GACGC	1 cut(s)	617
Csp6I	GTAC	1 cut(s)	98
CspAI	ACCGGT	1 cut(s)	59
CviAII	CATG	1 cut(s)	640
CviJI	RGCY	9 cut(s)	103, 136, 236, 268, 472, 535, 578, 584, 628
CviKI_1	RGCY	9 cut(s)	103, 136, 236, 268, 472, 535, 578, 584, 628
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	3 cut(s)	132, 138, 443
DpnI	GATC	4 cut(s)	69, 276, 296, 300
DpnII	GATC	4 cut(s)	67, 274, 294, 298
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
EciI	GGCGGA	1 cut(s)	311
Eco130I	CCWWGG	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	106
Eco72I	CACGTG	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	416
EcoO109I	RGGNCCY	1 cut(s)	627
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	221
ErhI	CCWWGG	1 cut(s)	221
Esp3I	CGTCTC	1 cut(s)	332
FaeI	CATG	1 cut(s)	643
FatI	CATG	1 cut(s)	639
FblI	GTMKAC	2 cut(s)	312, 423
Fnu4HI	GCNGC	3 cut(s)	206, 247, 585
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	3 cut(s)	206, 247, 585
FspBI	CTAG	1 cut(s)	579
GluI	GCNGC	3 cut(s)	206, 247, 585
HaeIII	GGCC	2 cut(s)	236, 628
HapII	CCGG	1 cut(s)	60
HgaI	GACGC	1 cut(s)	617
Hin1II	CATG	1 cut(s)	643
HincII	GTYRAC	2 cut(s)	313, 513
HindII	GTYRAC	2 cut(s)	313, 513
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	4 cut(s)	49, 74, 322, 583
Hpy166II	GTNNAC	5 cut(s)	313, 374, 424, 513, 607
Hpy188I	TCNGA	4 cut(s)	14, 133, 148, 444
Hpy188III	TCNNGA	3 cut(s)	111, 416, 455
Hpy8I	GTNNAC	5 cut(s)	313, 374, 424, 513, 607
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	3 cut(s)	135, 220, 236
HpyCH4III	ACNGT	2 cut(s)	108, 317
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	2 cut(s)	362, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	584, 617
HpyF3I	CTNAG	3 cut(s)	132, 138, 443
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	1 cut(s)	643
Kzo9I	GATC	4 cut(s)	67, 274, 294, 298
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	2 cut(s)	346, 407
Lsp1109I	GCAGC	2 cut(s)	217, 571
MaeI	CTAG	1 cut(s)	579
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	2 cut(s)	22, 589
MalI	GATC	4 cut(s)	69, 276, 296, 300
MboI	GATC	4 cut(s)	67, 274, 294, 298
MboII	GAAGA	4 cut(s)	77, 120, 209, 212
MhlI	GDGCHC	1 cut(s)	343
MluCI	AATT	3 cut(s)	252, 278, 555
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	2 cut(s)	584, 617
NdeII	GATC	4 cut(s)	67, 274, 294, 298
NlaIII	CATG	1 cut(s)	643
NlaIV	GGNNCC	1 cut(s)	629
NmuCI	GTSAC	2 cut(s)	22, 589
NspI	RCATGY	1 cut(s)	643
PaeR7I	CTCGAG	1 cut(s)	416
PasI	CCCWGGG	1 cut(s)	168
PciI	ACATGT	1 cut(s)	639
PciSI	GCTCTTC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	217
PflFI	GACNNNGTC	1 cut(s)	317
PinAI	ACCGGT	1 cut(s)	59
PkrI	GCNGC	3 cut(s)	207, 248, 586
PmaCI	CACGTG	1 cut(s)	338
PmlI	CACGTG	1 cut(s)	338
Ppu21I	YACGTR	1 cut(s)	338
PscI	ACATGT	1 cut(s)	639
PsiI	TTATAA	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	167
PspCI	CACGTG	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	629
PspPI	GGNCC	1 cut(s)	627
PsyI	GACNNNGTC	1 cut(s)	317
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SalI	GTCGAC	1 cut(s)	311
SapI	GCTCTTC	1 cut(s)	195
SatI	GCNGC	3 cut(s)	206, 247, 585
Sau3AI	GATC	4 cut(s)	67, 274, 294, 298
Sau96I	GGNCC	1 cut(s)	627
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	343
Sfr274I	CTCGAG	1 cut(s)	416
SgrAI	CRCCGGYG	1 cut(s)	59
SlaI	CTCGAG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	3 cut(s)	252, 278, 555
SsiI	CCGC	3 cut(s)	246, 322, 344
SspMI	CTAG	1 cut(s)	579
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	1 cut(s)	221
TaaI	ACNGT	2 cut(s)	108, 317
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	6 cut(s)	110, 297, 312, 417, 468, 505
TasI	AATT	3 cut(s)	252, 278, 555
TatI	WGTACW	1 cut(s)	97
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	217
TscAI	CASTG	1 cut(s)	627
TseFI	GTSAC	2 cut(s)	22, 589
TseI	GCWGC	2 cut(s)	205, 584
Tsp45I	GTSAC	2 cut(s)	22, 589
TspGWI	ACGGA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	627
Tth111I	GACNNNGTC	1 cut(s)	317
XceI	RCATGY	1 cut(s)	643
XhoI	CTCGAG	1 cut(s)	416
XmiI	GTMKAC	2 cut(s)	312, 423
XspI	CTAG	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.