Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001148

Physical Location & Seq

Genomic Coordinates Forward (+)

31897612 .. 31897980

Gene Structure 369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002303

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTCGGCTAGTGATCCAAATTCTGCCATATATGTAACTGATTCCTCAAAGGATATTGCGAGAAAGATAAACATGTTTGCATTTTCAGGGGGACAAGACTCAATAGAGGAACACAGACAGAAGGGAGCAAGGCTCGACGTAGATATACCGTACAAATACCTTCAATTTTTCCTAGAGGATGACAGTGAACTCAATTATATAAAGGAAGAGTATGGTGCGGGACGCATGTTAACCGGTCAAGTAAAAAAGCGGCTTATTGAAGTTTTGACTGAGATAGTAGAAAGACATCGTCAAGCTAGGGCTGCTGTGACTGATGAAATGGTAGATGCATTTATGGCAGTGAGGCCTCTACCTAATATGTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004830 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006436 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

123

Amino Acids

13.95

Weight (kDa)

5.18

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04600 AT3G04600 AT3G04600
fragaria_vesca	FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_5g27321
malus_domestica	MD04G1236500.v1.1 MD12G1255800.v1.1
prunus_persica	Prupe.7G057000_v2.0.a1 Prupe.7G057800_v2.0.a1
pyrus_communis	pycom04g21040 pycom12g23440
rosa_chinensis	RchiOBHm_Chr3g0493481 RchiOBHm_Chr7g0219201 RchiOBHm_Chr7g0219221 RchiOBHm_Chr7g0223011
rosa_laevigata	RLG00000002003 RLG00000002302 RLG00000002303 RLG00000022713
rosa_multiflora	Rmu_sc0000868.1_g000014 Rmu_sc0006373.1_g000002 Rmu_sc0006514.1_g000024 Rmu_sc0007422.1_g000005 Rmu_sc0009785.1_g000024 Rmu_sc0039697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234440 Rroxscaffold_3G00236350 Rroxscaffold_3G00237890 Rroxscaffold_3G00237970 Rroxscaffold_3G00238030 Rroxscaffold_3G00238960 Rroxscaffold_3G00238970 Rroxscaffold_5G00377610 Rroxscaffold_6G00391570 Rroxscaffold_7G00199590 Rroxscaffold_7G00199600
rosa_rugosa	Rorug07G0177500 Rorug07G0177500 Rorug07G0212800
rosa_samantha	Rh3AG310200 Rh3BG346300 Rh3CG344200 Rh3DG345400 Rh7AG319000 Rh7AG326700 Rh7AG357900 Rh7BG310900 Rh7BG346100 Rh7CG376000 Rh7DG318100 Rh7DG318200 Rh7DG352800
rosa_wichuraiana	Rw3G027260 Rw7G027160 Rw7G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	218, 250
AclWI	GGATC	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	19
AfaI	GTAC	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	72
AgeI	ACCGGT	1 cut(s)	233
AgsI	TTSAA	3 cut(s)	164, 260, 364
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
AlwI	GGATC	1 cut(s)	8
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	19
AsiGI	ACCGGT	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	289
BfaI	CTAG	3 cut(s)	9, 173, 297
BisI	GCNGC	2 cut(s)	251, 303
BlsI	GCNGC	2 cut(s)	252, 304
BmsI	GCATC	1 cut(s)	316
BplI	GAGNNNNNCTC	2 cut(s)	117, 149
BsaWI	WCCGGW	1 cut(s)	233
Bse118I	RCCGGY	1 cut(s)	233
BseGI	GGATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	289
BshFI	GGCC	1 cut(s)	346
BshTI	ACCGGT	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	2 cut(s)	105, 234
BsmFI	GGGAC	2 cut(s)	105, 234
BsnI	GGCC	1 cut(s)	346
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	2 cut(s)	218, 250
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	1 cut(s)	262
BspPI	GGATC	1 cut(s)	8
BsrFI	RCCGGY	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	233
BssMI	GATC	1 cut(s)	13
Bst4CI	ACNGT	2 cut(s)	150, 185
Bst6I	CTCTTC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 335
BstNSI	RCATGY	2 cut(s)	76, 229
BstV1I	GCAGC	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	184
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	2 cut(s)	190, 345
Cfr10I	RCCGGY	1 cut(s)	233
CseI	GACGC	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	151
CspAI	ACCGGT	1 cut(s)	233
CviAII	CATG	2 cut(s)	73, 226
CviJI	RGCY	6 cut(s)	8, 133, 253, 296, 302, 346
CviKI_1	RGCY	6 cut(s)	8, 133, 253, 296, 302, 346
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco147I	AGGCCT	1 cut(s)	346
EcoT22I	ATGCAT	1 cut(s)	331
FaeI	CATG	2 cut(s)	76, 229
FaqI	GGGAC	2 cut(s)	105, 234
FatI	CATG	2 cut(s)	72, 225
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	251, 303
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	2 cut(s)	251, 303
FspBI	CTAG	3 cut(s)	9, 173, 297
GluI	GCNGC	2 cut(s)	251, 303
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	1 cut(s)	234
HgaI	GACGC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	76, 229
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	2 cut(s)	41, 98
HpaI	GTTAAC	1 cut(s)	231
HpaII	CCGG	1 cut(s)	234
Hpy166II	GTNNAC	2 cut(s)	188, 231
Hpy8I	GTNNAC	2 cut(s)	188, 231
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	115, 170
HpyCH4III	ACNGT	2 cut(s)	150, 185
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	80, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 335
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	76, 229
KspAI	GTTAAC	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	2 cut(s)	72, 247
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	3 cut(s)	9, 173, 297
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	34, 307
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	1 cut(s)	218
MluCI	AATT	3 cut(s)	19, 164, 193
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	5 cut(s)	55, 100, 169, 336, 357
Mph1103I	ATGCAT	1 cut(s)	331
MseI	TTAA	1 cut(s)	230
MspI	CCGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	2 cut(s)	302, 335
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	2 cut(s)	76, 229
NmuCI	GTSAC	1 cut(s)	307
NsiI	ATGCAT	1 cut(s)	331
NspI	RCATGY	2 cut(s)	76, 229
PceI	AGGCCT	1 cut(s)	346
PciI	ACATGT	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	41
PflFI	GACNNNGTC	1 cut(s)	288
PinAI	ACCGGT	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	252, 304
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PscI	ACATGT	1 cut(s)	72
PsyI	GACNNNGTC	1 cut(s)	288
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	2 cut(s)	251, 303
Sau3AI	GATC	1 cut(s)	13
SchI	GAGTC	1 cut(s)	92
SetI	ASST	4 cut(s)	141, 162, 298, 355
SfaNI	GCATC	1 cut(s)	316
Sse9I	AATT	3 cut(s)	19, 164, 193
SseBI	AGGCCT	1 cut(s)	346
SsiI	CCGC	2 cut(s)	218, 250
SspMI	CTAG	3 cut(s)	9, 173, 297
StuI	AGGCCT	1 cut(s)	346
TaaI	ACNGT	2 cut(s)	150, 185
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	135
TasI	AATT	3 cut(s)	19, 164, 193
TauI	GCSGC	1 cut(s)	253
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	2 cut(s)	190, 345
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	330
TspRI	CASTG	2 cut(s)	190, 345
Tth111I	GACNNNGTC	1 cut(s)	288
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	2 cut(s)	76, 229
XspI	CTAG	3 cut(s)	9, 173, 297
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.