Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001148

Physical Location & Seq

Genomic Coordinates Reverse (-)

37570987 .. 37571148

Gene Structure 162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19619

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGTGCGGGACGCGCGCATGTTAACTGGTCAAGTAAAAAAGAGGCTTATTGAAGTTTTGACTGAGATAGTAGAAAGACATCGTCAAGCTAGGGCTGCTGTGACTGGTGAAATGGTAGATGCATTTATGGCAGTGAGGCCTCTACCTTATATGTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004830 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006436 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

53

Amino Acids

6.15

Weight (kDa)

10.23

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04600 AT3G04600 AT3G04600
fragaria_vesca	FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_5g27321
malus_domestica	MD04G1236500.v1.1 MD12G1255800.v1.1
prunus_persica	Prupe.7G057000_v2.0.a1 Prupe.7G057800_v2.0.a1
pyrus_communis	pycom04g21040 pycom12g23440
rosa_chinensis	RchiOBHm_Chr3g0493481 RchiOBHm_Chr7g0219201 RchiOBHm_Chr7g0219221 RchiOBHm_Chr7g0223011
rosa_laevigata	RLG00000002003 RLG00000002302 RLG00000002303 RLG00000022713
rosa_multiflora	Rmu_sc0000868.1_g000014 Rmu_sc0006373.1_g000002 Rmu_sc0006514.1_g000024 Rmu_sc0007422.1_g000005 Rmu_sc0009785.1_g000024 Rmu_sc0039697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234440 Rroxscaffold_3G00236350 Rroxscaffold_3G00237890 Rroxscaffold_3G00237970 Rroxscaffold_3G00238030 Rroxscaffold_3G00238960 Rroxscaffold_3G00238970 Rroxscaffold_5G00377610 Rroxscaffold_6G00391570 Rroxscaffold_7G00199590 Rroxscaffold_7G00199600
rosa_rugosa	Rorug07G0177500 Rorug07G0177500 Rorug07G0212800
rosa_samantha	Rh3AG310200 Rh3BG346300 Rh3CG344200 Rh3DG345400 Rh7AG319000 Rh7AG326700 Rh7AG357900 Rh7BG310900 Rh7BG346100 Rh7CG376000 Rh7DG318100 Rh7DG318200 Rh7DG352800
rosa_wichuraiana	Rw3G027260 Rw7G027160 Rw7G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	14, 16
AciI	CCGC	1 cut(s)	7
AgsI	TTSAA	2 cut(s)	53, 157
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	95
AspLEI	GCGC	2 cut(s)	16, 18
AsuHPI	GGTGA	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	82
BfaI	CTAG	1 cut(s)	90
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
BmsI	GCATC	1 cut(s)	109
Bse1I	ACTGG	2 cut(s)	31, 109
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	31, 109
BsePI	GCGCGC	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	82
Bsh1236I	CGCG	2 cut(s)	14, 16
BshFI	GGCC	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	139
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	55
BspFNI	CGCG	2 cut(s)	14, 16
BsrI	ACTGG	2 cut(s)	31, 109
BssHII	GCGCGC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	63
BstFNI	CGCG	2 cut(s)	14, 16
BstHHI	GCGC	2 cut(s)	16, 18
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 95, 128
BstNSI	RCATGY	1 cut(s)	22
BstUI	CGCG	2 cut(s)	14, 16
BstV1I	GCAGC	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	16
CfoI	GCGC	2 cut(s)	16, 18
CseI	GACGC	1 cut(s)	20
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	4 cut(s)	46, 89, 95, 139
CviKI_1	RGCY	4 cut(s)	46, 89, 95, 139
DdeI	CTNAG	1 cut(s)	63
Eco147I	AGGCCT	1 cut(s)	139
EcoT22I	ATGCAT	1 cut(s)	124
FaeI	CATG	1 cut(s)	22
FaiI	YATR	4 cut(s)	20, 128, 150, 152
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	1 cut(s)	90
FspEI	CC	9 cut(s)	12, 28, 76, 77, 90, 98, 113, 121, 153
GlaI	GCGC	2 cut(s)	15, 17
GluI	GCNGC	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	139
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	2 cut(s)	16, 18
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	2 cut(s)	14, 16
HinP1I	GCGC	2 cut(s)	14, 16
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HpaI	GTTAAC	1 cut(s)	24
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	24
Hpy8I	GTNNAC	1 cut(s)	24
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 95, 128
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	2 cut(s)	14, 16
KspAI	GTTAAC	1 cut(s)	24
LpnPI	CCDG	2 cut(s)	12, 90
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	100
MnlI	CCTC	3 cut(s)	36, 129, 150
Mph1103I	ATGCAT	1 cut(s)	124
MseI	TTAA	1 cut(s)	23
MvnI	CGCG	2 cut(s)	14, 16
MwoI	GCNNNNNNNGC	3 cut(s)	13, 95, 128
NlaIII	CATG	1 cut(s)	22
NmuCI	GTSAC	1 cut(s)	100
NsiI	ATGCAT	1 cut(s)	124
NspI	RCATGY	1 cut(s)	22
PauI	GCGCGC	1 cut(s)	14
PceI	AGGCCT	1 cut(s)	139
PflFI	GACNNNGTC	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	97
PsyI	GACNNNGTC	1 cut(s)	81
PteI	GCGCGC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	1 cut(s)	96
SetI	ASST	2 cut(s)	91, 148
SfaNI	GCATC	1 cut(s)	109
SgeI	CNNG	9 cut(s)	20, 25, 27, 31, 39, 44, 98, 102, 117
SseBI	AGGCCT	1 cut(s)	139
SsiI	CCGC	1 cut(s)	7
SspMI	CTAG	1 cut(s)	90
StuI	AGGCCT	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	100
TspRI	CASTG	1 cut(s)	138
Tth111I	GACNNNGTC	1 cut(s)	81
XceI	RCATGY	1 cut(s)	22
XspI	CTAG	1 cut(s)	90
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.