Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001148

Physical Location & Seq

Genomic Coordinates Forward (+)

34915294 .. 34928887

Gene Structure 13594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G027160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAGAAAAAAAGGGCATTGGAGATACAAGACAATGGAGAAGCAGAGCAACAGATGGTGACTCCATGGAGGGTGGAGGCCAAAGATGGCAGCAAAATCGATTATGATAAGCTTATTAACCAGTTTGCCCACCGGGACTTCAATGAGATTCTAGATGCTTATGAGAAAGGAGATAAGCTCTATTTGTACACAAGAAGAGGGCCTTCTTCTGAGTCTTTGCATTTGGGACATCTCATCCCCTTCATGTTCACTAAATATTTACTTGCAAGGGAGAATGCTAAAGACATTATTGCTTGTGGTTTTGACATAACAAGAACCTTCATCTTCTCTAATTTTGATTATGTTGGTGGTGCCTTTTACAAAAACATGGTGAAGGTGGGGAAGTGTGCTGTTCCGTCATTTCCTAGTTCATTTCCGCATCTTTTCTCTGGCCAAGATAACCTTTATGTTGCTCCACGCATTGGATATCAGAAACCTGCTTTGATCGAGTCTAAGTTCTTCCCTGCCCTGCAGGGAGAAACAAGAAAAATGTCAGCTAGTGATCCAAATTCTGGCATATATATATATATATATATATATATATACACACACATATATATAACTGATTCCGCAAAGGATATTGCGAAAAAGATAAACAAGTTTGTATTTTCAGGGGGACGAGATTCAATAGAGGAATATAGACAGAAGGGAGCACGGCTCGACATAGACATACCATACAAGTACGAATACCTTTTGTTTTTCCTAGAGGATGATAGTGAACTTAATTACATAAAGGAGGCGTATGGTGAGGGATGCATGTTAACAGGTCAAGTAAAACAGCGGCTTATTGAAGTTTTGACTGAAATAGTAGAAAGACATCGTCGAGCTAGGGCTGCTGTGACTGATGAGATGGTAGATGCATTTATGACGGTGAGGTCTCTACTCTACCTAATATGTTCAACTAAAGTTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004830 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006436 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

317

Amino Acids

36.6

Weight (kDa)

6.62

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04600 AT3G04600 AT3G04600
fragaria_vesca	FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_5g27321
malus_domestica	MD04G1236500.v1.1 MD12G1255800.v1.1
prunus_persica	Prupe.7G057000_v2.0.a1 Prupe.7G057800_v2.0.a1
pyrus_communis	pycom04g21040 pycom12g23440
rosa_chinensis	RchiOBHm_Chr3g0493481 RchiOBHm_Chr7g0219201 RchiOBHm_Chr7g0219221 RchiOBHm_Chr7g0223011
rosa_laevigata	RLG00000002003 RLG00000002302 RLG00000002303 RLG00000022713
rosa_multiflora	Rmu_sc0000868.1_g000014 Rmu_sc0006373.1_g000002 Rmu_sc0006514.1_g000024 Rmu_sc0007422.1_g000005 Rmu_sc0009785.1_g000024 Rmu_sc0039697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234440 Rroxscaffold_3G00236350 Rroxscaffold_3G00237890 Rroxscaffold_3G00237970 Rroxscaffold_3G00238030 Rroxscaffold_3G00238960 Rroxscaffold_3G00238970 Rroxscaffold_5G00377610 Rroxscaffold_6G00391570 Rroxscaffold_7G00199590 Rroxscaffold_7G00199600
rosa_rugosa	Rorug07G0177500 Rorug07G0177500 Rorug07G0212800
rosa_samantha	Rh3AG310200 Rh3BG346300 Rh3CG344200 Rh3DG345400 Rh7AG319000 Rh7AG326700 Rh7AG357900 Rh7BG310900 Rh7BG346100 Rh7CG376000 Rh7DG318100 Rh7DG318200 Rh7DG352800
rosa_wichuraiana	Rw3G027260 Rw7G027160 Rw7G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	913
Acc36I	ACCTGC	1 cut(s)	484
AccB1I	GGYRCC	1 cut(s)	350
AccB7I	CCANNNNNTGG	2 cut(s)	461, 551
AciI	CCGC	3 cut(s)	416, 609, 820
AclWI	GGATC	1 cut(s)	536
AcoI	YGGCCR	1 cut(s)	430
AcsI	RAATTY	1 cut(s)	547
AfaI	GTAC	2 cut(s)	188, 722
AfiI	CCNNNNNNNGG	2 cut(s)	461, 551
AgsI	TTSAA	4 cut(s)	142, 666, 830, 939
AluBI	AGCT	4 cut(s)	112, 178, 536, 866
AluI	AGCT	4 cut(s)	112, 178, 536, 866
Alw21I	GWGCWC	1 cut(s)	694
Alw26I	GTCTC	1 cut(s)	921
AlwI	GGATC	1 cut(s)	536
AoxI	GGCC	3 cut(s)	78, 200, 430
ApeKI	GCWGC	2 cut(s)	90, 872
ApoI	RAATTY	1 cut(s)	547
AspS9I	GGNCC	1 cut(s)	200
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	4 cut(s)	70, 382, 797, 922
BalI	TGGCCA	1 cut(s)	432
BanI	GGYRCC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	694
BbvI	GCAGC	2 cut(s)	102, 859
BccI	CCATC	3 cut(s)	49, 80, 883
BceAI	ACGGC	1 cut(s)	710
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	921
BfaI	CTAG	5 cut(s)	152, 405, 537, 743, 867
BfmI	CTRYAG	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	484
BisI	GCNGC	3 cut(s)	91, 821, 873
BlsI	GCNGC	3 cut(s)	92, 822, 874
Bme1390I	CCNGG	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	4 cut(s)	145, 427, 782, 886
BplI	GAGNNNNNCTC	4 cut(s)	162, 194, 681, 713
BpuMI	CCSGG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	921
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	2 cut(s)	461, 551
Bse1I	ACTGG	1 cut(s)	121
BseCI	ATCGAT	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	3 cut(s)	234, 754, 797
BseLI	CCNNNNNNNGG	2 cut(s)	461, 551
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	121
BseXI	GCAGC	2 cut(s)	102, 859
BshFI	GGCC	3 cut(s)	80, 202, 432
BshNI	GGYRCC	1 cut(s)	350
BshVI	ATCGAT	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	694
BsiSI	CCGG	1 cut(s)	133
BslFI	GGGAC	3 cut(s)	149, 240, 669
BslI	CCNNNNNNNGG	2 cut(s)	461, 551
BsmAI	GTCTC	1 cut(s)	921
BsmFI	GGGAC	3 cut(s)	149, 240, 669
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	3 cut(s)	80, 202, 432
Bso31I	GGTCTC	1 cut(s)	921
Bsp1286I	GDGCHC	1 cut(s)	694
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	483, 541
Bsp19I	CCATGG	1 cut(s)	65
BspACI	CCGC	3 cut(s)	416, 609, 820
BspANI	GGCC	3 cut(s)	80, 202, 432
BspCNI	CTCAG	1 cut(s)	202
BspDI	ATCGAT	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	352
BspMAI	CTGCAG	1 cut(s)	513
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	1 cut(s)	536
BspT107I	GGYRCC	1 cut(s)	350
BspTNI	GGTCTC	1 cut(s)	921
BsrGI	TGTACA	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	2 cut(s)	483, 541
BssT1I	CCWWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	910
Bst6I	CTCTTC	1 cut(s)	190
BstAUI	TGTACA	1 cut(s)	186
BstDEI	CTNAG	3 cut(s)	210, 492, 951
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	3 cut(s)	234, 754, 797
BstKTI	GATC	2 cut(s)	486, 544
BstMAI	GTCTC	1 cut(s)	921
BstMBI	GATC	2 cut(s)	483, 541
BstMWI	GCNNNNNNNGC	1 cut(s)	872
BstNSI	RCATGY	1 cut(s)	799
BstSCI	CCNGG	1 cut(s)	132
BstSFI	CTRYAG	1 cut(s)	509
BstV1I	GCAGC	2 cut(s)	102, 859
Bsu15I	ATCGAT	1 cut(s)	99
BsuRI	GGCC	3 cut(s)	80, 202, 432
BsuTUI	ATCGAT	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	3 cut(s)	234, 754, 797
BveI	ACCTGC	1 cut(s)	484
Cfr13I	GGNCC	1 cut(s)	200
ClaI	ATCGAT	1 cut(s)	99
Csp6I	GTAC	2 cut(s)	187, 721
CviAII	CATG	4 cut(s)	66, 244, 367, 796
CviQI	GTAC	2 cut(s)	187, 721
DdeI	CTNAG	3 cut(s)	210, 492, 951
DpnI	GATC	2 cut(s)	485, 543
DpnII	GATC	2 cut(s)	483, 541
DrdI	GACNNNNNNGTC	1 cut(s)	913
DseDI	GACNNNNNNGTC	1 cut(s)	913
EaeI	YGGCCR	1 cut(s)	430
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	921
Eco32I	GATATC	1 cut(s)	467
EcoO109I	RGGNCCY	1 cut(s)	200
EcoRV	GATATC	1 cut(s)	467
EcoT14I	CCWWGG	1 cut(s)	65
EcoT22I	ATGCAT	2 cut(s)	797, 901
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	4 cut(s)	69, 247, 370, 799
FalI	AAGNNNNNCTT	4 cut(s)	187, 219, 426, 458
FaqI	GGGAC	3 cut(s)	149, 240, 669
FatI	CATG	4 cut(s)	65, 243, 366, 795
Fnu4HI	GCNGC	3 cut(s)	91, 821, 873
FokI	GGATG	3 cut(s)	221, 761, 804
Fsp4HI	GCNGC	3 cut(s)	91, 821, 873
FspBI	CTAG	5 cut(s)	152, 405, 537, 743, 867
GluI	GCNGC	3 cut(s)	91, 821, 873
HaeIII	GGCC	3 cut(s)	80, 202, 432
HapII	CCGG	1 cut(s)	133
Hin1II	CATG	4 cut(s)	69, 247, 370, 799
HincII	GTYRAC	1 cut(s)	801
HindII	GTYRAC	1 cut(s)	801
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	6 cut(s)	61, 148, 212, 488, 605, 662
HpaI	GTTAAC	1 cut(s)	801
HpaII	CCGG	1 cut(s)	133
HphI	GGTGA	4 cut(s)	70, 382, 797, 922
Hpy166II	GTNNAC	4 cut(s)	189, 249, 758, 801
Hpy188I	TCNGA	2 cut(s)	211, 471
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	4 cut(s)	189, 249, 758, 801
Hpy99I	CGWCG	1 cut(s)	864
HpyAV	CCTTC	5 cut(s)	213, 250, 328, 367, 679
HpyCH4III	ACNGT	1 cut(s)	910
HpyCH4V	TGCA	5 cut(s)	220, 266, 511, 795, 899
HpyF10VI	GCNNNNNNNGC	1 cut(s)	872
HpyF3I	CTNAG	3 cut(s)	210, 492, 951
Hsp92II	CATG	4 cut(s)	69, 247, 370, 799
KspAI	GTTAAC	1 cut(s)	801
Kzo9I	GATC	2 cut(s)	483, 541
LmnI	GCTCC	2 cut(s)	457, 689
Lsp1109I	GCAGC	2 cut(s)	102, 859
LweI	GCATC	4 cut(s)	145, 427, 782, 886
MaeI	CTAG	5 cut(s)	152, 405, 537, 743, 867
MaeIII	GTNAC	2 cut(s)	58, 877
MalI	GATC	2 cut(s)	485, 543
MboI	GATC	2 cut(s)	483, 541
MboII	GAAGA	4 cut(s)	198, 207, 316, 490
MhlI	GDGCHC	1 cut(s)	694
MlsI	TGGCCA	1 cut(s)	432
MluCI	AATT	3 cut(s)	331, 547, 763
MluNI	TGGCCA	1 cut(s)	432
MlyI	GAGTC	3 cut(s)	55, 221, 497
MnlI	CCTC	8 cut(s)	63, 70, 191, 664, 739, 769, 781, 906
Mox20I	TGGCCA	1 cut(s)	432
Mph1103I	ATGCAT	2 cut(s)	797, 901
MscI	TGGCCA	1 cut(s)	432
MseI	TTAA	3 cut(s)	117, 762, 800
Msp20I	TGGCCA	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	820
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	1 cut(s)	134
Mva1269I	GAATGC	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	872
NciI	CCSGG	1 cut(s)	134
NcoI	CCATGG	1 cut(s)	65
NdeII	GATC	2 cut(s)	483, 541
NlaIII	CATG	4 cut(s)	69, 247, 370, 799
NlaIV	GGNNCC	1 cut(s)	352
NmuCI	GTSAC	2 cut(s)	58, 877
NsiI	ATGCAT	2 cut(s)	797, 901
NspI	RCATGY	1 cut(s)	799
PctI	GAATGC	1 cut(s)	280
PfeI	GAWTC	3 cut(s)	148, 605, 662
PflFI	GACNNNGTC	1 cut(s)	858
PflMI	CCANNNNNTGG	2 cut(s)	461, 551
PkrI	GCNGC	3 cut(s)	92, 822, 874
PleI	GAGTC	3 cut(s)	55, 220, 496
PpsI	GAGTC	3 cut(s)	55, 220, 496
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	200
PstI	CTGCAG	1 cut(s)	513
PsyI	GACNNNGTC	1 cut(s)	858
RsaI	GTAC	2 cut(s)	188, 722
RsaNI	GTAC	2 cut(s)	187, 721
SaqAI	TTAA	3 cut(s)	117, 762, 800
SatI	GCNGC	3 cut(s)	91, 821, 873
Sau3AI	GATC	2 cut(s)	483, 541
Sau96I	GGNCC	1 cut(s)	200
SbfI	CCTGCAGG	1 cut(s)	513
SchI	GAGTC	3 cut(s)	55, 221, 497
ScrFI	CCNGG	1 cut(s)	134
SdaI	CCTGCAGG	1 cut(s)	513
SduI	GDGCHC	1 cut(s)	694
SfaNI	GCATC	4 cut(s)	145, 427, 782, 886
SfcI	CTRYAG	1 cut(s)	509
Sse8387I	CCTGCAGG	1 cut(s)	513
Sse9I	AATT	3 cut(s)	331, 547, 763
SsiI	CCGC	3 cut(s)	416, 609, 820
SspI	AATATT	1 cut(s)	257
SspMI	CTAG	5 cut(s)	152, 405, 537, 743, 867
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	910
TaqI	TCGA	4 cut(s)	99, 486, 699, 862
TasI	AATT	3 cut(s)	331, 547, 763
TatI	WGTACW	1 cut(s)	186
TauI	GCSGC	1 cut(s)	823
TfiI	GAWTC	3 cut(s)	148, 605, 662
Tru1I	TTAA	3 cut(s)	117, 762, 800
Tru9I	TTAA	3 cut(s)	117, 762, 800
TseFI	GTSAC	2 cut(s)	58, 877
TseI	GCWGC	2 cut(s)	90, 872
Tsp45I	GTSAC	2 cut(s)	58, 877
TspDTI	ATGAA	3 cut(s)	232, 310, 399
TspGWI	ACGGA	1 cut(s)	384
Tth111I	GACNNNGTC	1 cut(s)	858
Van91I	CCANNNNNTGG	2 cut(s)	461, 551
XapI	RAATTY	1 cut(s)	547
XbaI	TCTAGA	1 cut(s)	151
XceI	RCATGY	1 cut(s)	799
XspI	CTAG	5 cut(s)	152, 405, 537, 743, 867
Zsp2I	ATGCAT	2 cut(s)	797, 901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.