RchiOBHm_Chr7g0223011

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
44633350 .. 44640754
7405 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19966

Sequence Viewer

Length: 1197 bp
ATGGAGATAAAGGAAAACGGAGAAGAAGAGCAGCAGATTGTGAATCCTTGGAAGGTGGAGGCCAAAGAAGGCGGCAAAATCGACTATGATAAGCTCATAGATCAGTTCGGTTGCCAGAGGATCGATCAGTCTCTCGTCGACCGTGTCCGCCGTCTCACCTCACATACTCCGCACGTTTTCCTCCGCCGTGACGTCTTCTTCGCTCACCGGGACTTCAATGAGATTCTGGATGCTTATGAGAGAGGAGAGAAGTTCTATTTGTACACAGGAAGAGGGCCTTCCTCTGAGGCTTTGCATTTGGGGCATCTCATCCCCTTCATGTTCACCAAATATCTGCAAGATGCCTTCAAGGTCCCTCTCGTTATACAACTTACCGATGACGAGAAATGTATATGGAAAAATCTCACAGTTGAAGAAAGCCAGAGACTTGCAAGGGAAAATGCTAAAGACATCATTGCTTGTGGTTTTGATGTAACAAGAACCTTTATCTTCTCTGATTTTGATTATGTTGGGGGTGCCTTCTACAAGAACATGGTTAAGGTTGGAAAGTGTGTCACCTATAATAAGGTTGTTGGCATATTTGGTTTCACCGGTGAAGATCATATAGGAAAAGTTAGTTTTCCTCCTGTACAGGCGGTACCATCATTTCCAAGTTCATTTCCACATCTCTTCTCTGGCCAAGATAATCTTCGTTGCTTAATACCCTGTGCAATTGACCAGGATCCTTATTTTAGAATGACCCGAGATGTTGCTCCACGCATTGGATATCATAAACCTGCTTTAATCGAGTCTCTATTCTTCCCTGCCCTCCAGGGAGAAACAGGAAAAATGTCGGCTAGTGATCCAAATTCTGCCATCTATGTAACTGATTCTGCAAAGGATATTAAGAGCAAGATAAACAAGTTTGCATTTTCAGGGGGACAAGATACAATAGAGAAACACAGAGAGTTGGGAGCAAATCTCGAGGTAGACATTCCATACAAGTATCTGAAATTTTTTCTGGATGATGACATCGAGCTTGCTTATATCGGAAAGGAGTATGGTGCAGGTCGAATGTTGACAGGGGAAGTGAAGCAGAGGCTCATTCAAGTTTTGACAGAAATTGTGGAGAGACATCGTAGGGCTAGAGCTGCTGTCACTGATGAGATGGTGGACGCATTTATGGCAGTGAGGCCCCTCCCAAACATGTTCAACTAA

Protein Analysis

398

Amino Acids

45.46

Weight (kDa)

5.98

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1b PF00579 82 - 368 9.7e-20 tRNA synthetases class I (W and Y)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 195
Acc36I ACCTGC 2 cut(s) 784, 1037
Acc65I GGTACC 1 cut(s) 637
AccB1I GGYRCC 2 cut(s) 515, 637
AccB7I CCANNNNNTGG 1 cut(s) 761
AccI GTMKAC 2 cut(s) 138, 969
AciI CCGC 5 cut(s) 72, 148, 170, 184, 635
AclWI GGATC 4 cut(s) 128, 716, 729, 836
AcoI YGGCCR 1 cut(s) 676
AcsI RAATTY 2 cut(s) 847, 992
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 3 cut(s) 263, 630, 639
AfiI CCNNNNNNNGG 1 cut(s) 761
AflIII ACRYGT 1 cut(s) 1185
AgeI ACCGGT 1 cut(s) 590
AgsI TTSAA 5 cut(s) 217, 349, 413, 1088, 1192
AjnI CCWGG 2 cut(s) 717, 810
AjuI GAANNNNNNNTTGG 2 cut(s) 672, 704
AluBI AGCT 3 cut(s) 94, 1018, 1130
AluI AGCT 3 cut(s) 94, 1018, 1130
Alw26I GTCTC 5 cut(s) 135, 158, 418, 795, 1105
AlwI GGATC 4 cut(s) 128, 716, 729, 836
Ama87I CYCGRG 2 cut(s) 741, 962
AoxI GGCC 4 cut(s) 60, 275, 676, 1172
ApeKI GCWGC 2 cut(s) 31, 1130
ApoI RAATTY 2 cut(s) 847, 992
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AsiGI ACCGGT 1 cut(s) 590
Asp718I GGTACC 1 cut(s) 637
AspS9I GGNCC 3 cut(s) 275, 352, 1173
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 6 cut(s) 148, 197, 316, 547, 580, 605
AvaI CYCGRG 2 cut(s) 741, 962
AvaII GGWCC 1 cut(s) 352
BalI TGGCCA 1 cut(s) 678
BamHI GGATCC 1 cut(s) 721
BanI GGYRCC 2 cut(s) 515, 637
BbsI GAAGAC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 43, 1117
BccI CCATC 3 cut(s) 649, 863, 1141
BceAI ACGGC 2 cut(s) 135, 171
BciT130I CCWGG 2 cut(s) 719, 812
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 5 cut(s) 135, 158, 418, 795, 1105
BfaI CTAG 2 cut(s) 837, 1125
BfuAI ACCTGC 2 cut(s) 784, 1037
BisI GCNGC 3 cut(s) 32, 73, 1131
BlsI GCNGC 3 cut(s) 33, 74, 1132
Bme1390I CCNGG 3 cut(s) 209, 719, 812
Bme18I GGWCC 1 cut(s) 352
BmeT110I CYCGRG 2 cut(s) 741, 962
BmgT120I GGNCC 3 cut(s) 275, 352, 1173
BmiI GGNNCC 5 cut(s) 354, 517, 639, 723, 1175
BmrFI CCNGG 3 cut(s) 209, 719, 812
BmsI GCATC 3 cut(s) 220, 313, 331
BpiI GAAGAC 1 cut(s) 187
BplI GAGNNNNNCTC 2 cut(s) 945, 977
BpmI CTGGAG 1 cut(s) 794
BpuMI CCSGG 1 cut(s) 209
Bsa29I ATCGAT 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 47, 811
BsaWI WCCGGW 1 cut(s) 590
Bsc4I CCNNNNNNNGG 1 cut(s) 761
Bse118I RCCGGY 1 cut(s) 590
Bse3DI GCAATG 1 cut(s) 453
BseBI CCWGG 2 cut(s) 719, 812
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 2 cut(s) 47, 811
BseGI GGATG 3 cut(s) 235, 309, 1009
BseLI CCNNNNNNNGG 1 cut(s) 761
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 1 cut(s) 276
BseRI GAGGAG 1 cut(s) 258
BseXI GCAGC 2 cut(s) 43, 1117
BsgI GTGCAG 1 cut(s) 1065
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 4 cut(s) 62, 277, 678, 1174
BshNI GGYRCC 2 cut(s) 515, 637
BshTI ACCGGT 1 cut(s) 590
BshVI ATCGAT 1 cut(s) 123
BsiEI CGRYCG 1 cut(s) 142
BsiHKCI CYCGRG 2 cut(s) 741, 962
BsiSI CCGG 2 cut(s) 208, 591
BslFI GGGAC 3 cut(s) 224, 338, 933
BslI CCNNNNNNNGG 1 cut(s) 761
BsmAI GTCTC 5 cut(s) 135, 158, 418, 795, 1105
BsmBI CGTCTC 1 cut(s) 158
BsmFI GGGAC 3 cut(s) 224, 338, 933
BsnI GGCC 4 cut(s) 62, 277, 678, 1174
BsoBI CYCGRG 2 cut(s) 741, 962
Bsp1407I TGTACA 2 cut(s) 261, 628
Bsp143I GATC 6 cut(s) 100, 120, 124, 598, 721, 841
BspACI CCGC 5 cut(s) 72, 148, 170, 184, 635
BspANI GGCC 4 cut(s) 62, 277, 678, 1174
BspCNI CTCAG 1 cut(s) 277
BspDI ATCGAT 1 cut(s) 123
BspLI GGNNCC 5 cut(s) 354, 517, 639, 723, 1175
BspMI ACCTGC 2 cut(s) 784, 1037
BspPI GGATC 4 cut(s) 128, 716, 729, 836
BspQI GCTCTTC 1 cut(s) 21
BspT107I GGYRCC 2 cut(s) 515, 637
BsrDI GCAATG 1 cut(s) 453
BsrFI RCCGGY 1 cut(s) 590
BsrGI TGTACA 2 cut(s) 261, 628
BssAI RCCGGY 1 cut(s) 590
BssECI CCNNGG 2 cut(s) 47, 811
BssMI GATC 6 cut(s) 100, 120, 124, 598, 721, 841
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 719, 812
Bst4CI ACNGT 2 cut(s) 143, 409
Bst6I CTCTTC 3 cut(s) 21, 265, 674
BstACI GRCGYC 1 cut(s) 192
BstAUI TGTACA 2 cut(s) 261, 628
BstC8I GCNNGC 1 cut(s) 1020
BstDEI CTNAG 1 cut(s) 285
BstF5I GGATG 3 cut(s) 235, 309, 1009
BstKTI GATC 6 cut(s) 103, 123, 127, 601, 724, 844
BstMAI GTCTC 5 cut(s) 135, 158, 418, 795, 1105
BstMBI GATC 6 cut(s) 100, 120, 124, 598, 721, 841
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 3 cut(s) 301, 1130, 1163
BstNI CCWGG 2 cut(s) 719, 812
BstNSI RCATGY 1 cut(s) 1189
BstSCI CCNGG 3 cut(s) 207, 717, 810
BstV1I GCAGC 2 cut(s) 43, 1117
BstV2I GAAGAC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 721
BstYI RGATCY 1 cut(s) 721
Bsu15I ATCGAT 1 cut(s) 123
BsuRI GGCC 4 cut(s) 62, 277, 678, 1174
BsuTUI ATCGAT 1 cut(s) 123
BtsCI GGATG 3 cut(s) 235, 309, 1009
BtsI GCAGTG 1 cut(s) 1173
BtsIMutI CAGTG 2 cut(s) 1137, 1173
BveI ACCTGC 2 cut(s) 784, 1037
Cac8I GCNNGC 1 cut(s) 1020
Cfr10I RCCGGY 1 cut(s) 590
Cfr13I GGNCC 3 cut(s) 275, 352, 1173
ClaI ATCGAT 1 cut(s) 123
CseI GACGC 1 cut(s) 1163
Csp6I GTAC 3 cut(s) 262, 629, 638
CspAI ACCGGT 1 cut(s) 590
CviAII CATG 3 cut(s) 319, 532, 1186
CviQI GTAC 3 cut(s) 262, 629, 638
DdeI CTNAG 1 cut(s) 285
DpnI GATC 6 cut(s) 102, 122, 126, 600, 723, 843
DpnII GATC 6 cut(s) 100, 120, 124, 598, 721, 841
EaeI YGGCCR 1 cut(s) 676
Eam1104I CTCTTC 3 cut(s) 21, 265, 674
EarI CTCTTC 3 cut(s) 21, 265, 674
EciI GGCGGA 2 cut(s) 137, 173
Eco130I CCWWGG 1 cut(s) 47
Eco32I GATATC 1 cut(s) 767
Eco47I GGWCC 1 cut(s) 352
Eco88I CYCGRG 2 cut(s) 741, 962
EcoO109I RGGNCCY 3 cut(s) 275, 352, 1173
EcoRII CCWGG 2 cut(s) 717, 810
EcoRV GATATC 1 cut(s) 767
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
Esp3I CGTCTC 1 cut(s) 158
FaeI CATG 3 cut(s) 322, 535, 1189
FalI AAGNNNNNCTT 4 cut(s) 262, 294, 672, 704
FaqI GGGAC 3 cut(s) 224, 338, 933
FatI CATG 3 cut(s) 318, 531, 1185
FblI GTMKAC 2 cut(s) 138, 969
Fnu4HI GCNGC 3 cut(s) 32, 73, 1131
FokI GGATG 3 cut(s) 242, 296, 1016
Fsp4HI GCNGC 3 cut(s) 32, 73, 1131
FspBI CTAG 2 cut(s) 837, 1125
GluI GCNGC 3 cut(s) 32, 73, 1131
GsuI CTGGAG 1 cut(s) 794
HaeIII GGCC 4 cut(s) 62, 277, 678, 1174
HapII CCGG 2 cut(s) 208, 591
HgaI GACGC 1 cut(s) 1163
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 3 cut(s) 322, 535, 1189
HincII GTYRAC 2 cut(s) 139, 1059
HindII GTYRAC 2 cut(s) 139, 1059
HinfI GANTC 4 cut(s) 43, 223, 788, 869
HpaII CCGG 2 cut(s) 208, 591
HphI GGTGA 6 cut(s) 148, 197, 316, 547, 580, 605
Hpy166II GTNNAC 6 cut(s) 139, 264, 324, 970, 1059, 1153
Hpy188I TCNGA 4 cut(s) 286, 496, 990, 1031
Hpy188III TCNNGA 3 cut(s) 227, 962, 1001
Hpy8I GTNNAC 6 cut(s) 139, 264, 324, 970, 1059, 1153
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 6 cut(s) 46, 62, 288, 325, 355, 529
HpyCH4III ACNGT 2 cut(s) 143, 409
HpyCH4IV ACGT 2 cut(s) 174, 192
HpyCH4V TGCA 7 cut(s) 295, 337, 431, 710, 875, 908, 1046
HpyF10VI GCNNNNNNNGC 3 cut(s) 301, 1130, 1163
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 2 cut(s) 174, 192
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 3 cut(s) 322, 535, 1189
KpnI GGTACC 1 cut(s) 641
Kzo9I GATC 6 cut(s) 100, 120, 124, 598, 721, 841
LguI GCTCTTC 1 cut(s) 21
LmnI GCTCC 2 cut(s) 757, 953
Lsp1109I GCAGC 2 cut(s) 43, 1117
LweI GCATC 3 cut(s) 220, 313, 331
MaeI CTAG 2 cut(s) 837, 1125
MaeII ACGT 2 cut(s) 174, 192
MaeIII GTNAC 5 cut(s) 188, 472, 553, 862, 1135
MalI GATC 6 cut(s) 102, 122, 126, 600, 723, 843
MboI GATC 6 cut(s) 100, 120, 124, 598, 721, 841
MfeI CAATTG 1 cut(s) 711
MflI RGATCY 1 cut(s) 721
MlsI TGGCCA 1 cut(s) 678
MluCI AATT 4 cut(s) 711, 847, 992, 1101
MluNI TGGCCA 1 cut(s) 678
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 1 cut(s) 523
Mox20I TGGCCA 1 cut(s) 678
MscI TGGCCA 1 cut(s) 678
MseI TTAA 4 cut(s) 537, 698, 782, 885
Msp20I TGGCCA 1 cut(s) 678
MspI CCGG 2 cut(s) 208, 591
MspR9I CCNGG 3 cut(s) 209, 719, 812
MunI CAATTG 1 cut(s) 711
MvaI CCWGG 2 cut(s) 719, 812
MwoI GCNNNNNNNGC 3 cut(s) 301, 1130, 1163
NciI CCSGG 1 cut(s) 209
NdeII GATC 6 cut(s) 100, 120, 124, 598, 721, 841
NlaIII CATG 3 cut(s) 322, 535, 1189
NlaIV GGNNCC 5 cut(s) 354, 517, 639, 723, 1175
NmuCI GTSAC 3 cut(s) 188, 553, 1135
NspI RCATGY 1 cut(s) 1189
PaeR7I CTCGAG 1 cut(s) 962
PciI ACATGT 1 cut(s) 1185
PciSI GCTCTTC 1 cut(s) 21
PfeI GAWTC 3 cut(s) 43, 223, 869
PflFI GACNNNGTC 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 761
PinAI ACCGGT 1 cut(s) 590
PkrI GCNGC 3 cut(s) 33, 74, 1132
PleI GAGTC 1 cut(s) 796
PpsI GAGTC 1 cut(s) 796
PpuMI RGGWCCY 1 cut(s) 352
PscI ACATGT 1 cut(s) 1185
Psp5II RGGWCCY 1 cut(s) 352
Psp6I CCWGG 2 cut(s) 717, 810
PspGI CCWGG 2 cut(s) 717, 810
PspN4I GGNNCC 5 cut(s) 354, 517, 639, 723, 1175
PspPI GGNCC 3 cut(s) 275, 352, 1173
PspPPI RGGWCCY 1 cut(s) 352
PsuI RGATCY 1 cut(s) 721
PsyI GACNNNGTC 1 cut(s) 143
RsaI GTAC 3 cut(s) 263, 630, 639
RsaNI GTAC 3 cut(s) 262, 629, 638
SalI GTCGAC 1 cut(s) 137
SapI GCTCTTC 1 cut(s) 21
SaqAI TTAA 4 cut(s) 537, 698, 782, 885
SatI GCNGC 3 cut(s) 32, 73, 1131
Sau3AI GATC 6 cut(s) 100, 120, 124, 598, 721, 841
Sau96I GGNCC 3 cut(s) 275, 352, 1173
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 3 cut(s) 209, 719, 812
SfaNI GCATC 3 cut(s) 220, 313, 331
Sfr274I CTCGAG 1 cut(s) 962
SgrAI CRCCGGYG 1 cut(s) 590
SinI GGWCC 1 cut(s) 352
SlaI CTCGAG 1 cut(s) 962
SmlI CTYRAG 1 cut(s) 962
SmoI CTYRAG 1 cut(s) 962
Sse9I AATT 4 cut(s) 711, 847, 992, 1101
SsiI CCGC 5 cut(s) 72, 148, 170, 184, 635
SspMI CTAG 2 cut(s) 837, 1125
StyD4I CCNGG 3 cut(s) 207, 717, 810
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 143, 409
TaiI ACGT 2 cut(s) 177, 195
TaqI TCGA 7 cut(s) 81, 123, 138, 786, 963, 1014, 1051
TasI AATT 4 cut(s) 711, 847, 992, 1101
TatI WGTACW 2 cut(s) 261, 628
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 3 cut(s) 43, 223, 869
Tru1I TTAA 4 cut(s) 537, 698, 782, 885
Tru9I TTAA 4 cut(s) 537, 698, 782, 885
TscAI CASTG 2 cut(s) 1144, 1173
TseFI GTSAC 3 cut(s) 188, 553, 1135
TseI GCWGC 2 cut(s) 31, 1130
Tsp45I GTSAC 3 cut(s) 188, 553, 1135
TspDTI ATGAA 2 cut(s) 307, 645
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 2 cut(s) 1144, 1173
Tth111I GACNNNGTC 1 cut(s) 143
Van91I CCANNNNNTGG 1 cut(s) 761
VpaK11BI GGWCC 1 cut(s) 352
XapI RAATTY 2 cut(s) 847, 992
XceI RCATGY 1 cut(s) 1189
XhoI CTCGAG 1 cut(s) 962
XmiI GTMKAC 2 cut(s) 138, 969
XspI CTAG 2 cut(s) 837, 1125
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.