Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001148

Physical Location & Seq

Genomic Coordinates Reverse (-)

18806513 .. 18806830

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0212800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTTGGAGACACTCTACTTTTTGTTTATAATAAGAAAATTTCATTACTTGATGGAAGTGAATGGAGAAGATTCCCAATCTTGCAACAAAAAGTCTCTTCTAGCACACTATGCTTCCGGACATGATTCTATCCCTCTTAACAAACCTGGCGACTATTACTTCATTTGTGGTAGATATTTTGAACTAGAGTGGTATGCTATACGACTCTCAAGGAACCATGCCACAGTTGCCAAGCAGGACAAAAGCTTCACGTCAAGGTCACTACCAATGTCAAATCACCATTTCATTGCACGTCCAACCCTAGCACCACCTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004830 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006436 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

105

Amino Acids

12.3

Weight (kDa)

9.2

Isoelectric Point (pI)

58.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	4 - 58	2e-09	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04600 AT3G04600 AT3G04600
fragaria_vesca	FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_5g27321
malus_domestica	MD04G1236500.v1.1 MD12G1255800.v1.1
prunus_persica	Prupe.7G057000_v2.0.a1 Prupe.7G057800_v2.0.a1
pyrus_communis	pycom04g21040 pycom12g23440
rosa_chinensis	RchiOBHm_Chr3g0493481 RchiOBHm_Chr7g0219201 RchiOBHm_Chr7g0219221 RchiOBHm_Chr7g0223011
rosa_laevigata	RLG00000002003 RLG00000002302 RLG00000002303 RLG00000022713
rosa_multiflora	Rmu_sc0000868.1_g000014 Rmu_sc0006373.1_g000002 Rmu_sc0006514.1_g000024 Rmu_sc0007422.1_g000005 Rmu_sc0009785.1_g000024 Rmu_sc0039697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234440 Rroxscaffold_3G00236350 Rroxscaffold_3G00237890 Rroxscaffold_3G00237970 Rroxscaffold_3G00238030 Rroxscaffold_3G00238960 Rroxscaffold_3G00238970 Rroxscaffold_5G00377610 Rroxscaffold_6G00391570 Rroxscaffold_7G00199590 Rroxscaffold_7G00199600
rosa_rugosa	Rorug07G0177500 Rorug07G0177500 Rorug07G0212800
rosa_samantha	Rh3AG310200 Rh3BG346300 Rh3CG344200 Rh3DG345400 Rh7AG319000 Rh7AG326700 Rh7AG357900 Rh7BG310900 Rh7BG346100 Rh7CG376000 Rh7DG318100 Rh7DG318200 Rh7DG352800
rosa_wichuraiana	Rw3G027260 Rw7G027160 Rw7G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	29
AccIII	TCCGGA	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	182
AjiI	CACGTC	2 cut(s)	252, 293
AjnI	CCWGG	1 cut(s)	145
AleI	CACNNNNGTG	1 cut(s)	313
AluBI	AGCT	1 cut(s)	246
AluI	AGCT	1 cut(s)	246
Alw26I	GTCTC	2 cut(s)	2, 99
Aor13HI	TCCGGA	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	269
BccI	CCATC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	147
BcoDI	GTCTC	2 cut(s)	2, 99
BfaI	CTAG	3 cut(s)	101, 185, 302
Bme1390I	CCNGG	1 cut(s)	147
BmgBI	CACGTC	2 cut(s)	252, 293
BmiI	GGNNCC	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	311
BsaWI	WCCGGW	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	285
BseAI	TCCGGA	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	311
BseMI	GCAATG	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	117
BsmAI	GTCTC	2 cut(s)	2, 99
Bsp13I	TCCGGA	1 cut(s)	116
BspEI	TCCGGA	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	311
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstMAI	GTCTC	2 cut(s)	2, 99
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 227
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	145
BtrI	CACGTC	2 cut(s)	252, 293
CviAII	CATG	2 cut(s)	122, 218
CviJI	RGCY	1 cut(s)	246
CviKI_1	RGCY	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	145
FaeI	CATG	2 cut(s)	125, 221
FaiI	YATR	6 cut(s)	29, 111, 123, 195, 200, 219
FatI	CATG	2 cut(s)	121, 217
FspBI	CTAG	3 cut(s)	101, 185, 302
HapII	CCGG	1 cut(s)	117
Hin1II	CATG	2 cut(s)	125, 221
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	3 cut(s)	71, 125, 204
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	1 cut(s)	269
Hpy188III	TCNNGA	1 cut(s)	117
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	2 cut(s)	251, 292
HpyCH4V	TGCA	2 cut(s)	84, 290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 227
HpySE526I	ACGT	2 cut(s)	251, 292
Hsp92II	CATG	2 cut(s)	125, 221
Kpn2I	TCCGGA	1 cut(s)	116
LpnPI	CCDG	4 cut(s)	130, 132, 159, 221
MaeI	CTAG	3 cut(s)	101, 185, 302
MaeII	ACGT	2 cut(s)	251, 292
MaeIII	GTNAC	1 cut(s)	258
MboII	GAAGA	2 cut(s)	80, 89
MluCI	AATT	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	198
MnlI	CCTC	1 cut(s)	144
MroI	TCCGGA	1 cut(s)	116
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	313
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	110, 227
NlaIII	CATG	2 cut(s)	125, 221
NlaIV	GGNNCC	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	258
OliI	CACNNNNGTG	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	71, 125
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
PsiI	TTATAA	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	138
SchI	GAGTC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	147
SetI	ASST	6 cut(s)	148, 248, 254, 260, 295, 313
SmiMI	CAYNNNNRTG	1 cut(s)	313
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	1 cut(s)	38
SspMI	CTAG	3 cut(s)	101, 185, 302
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	2 cut(s)	254, 295
TasI	AATT	1 cut(s)	38
TfiI	GAWTC	2 cut(s)	71, 125
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	258
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	3 cut(s)	32, 151, 274
XapI	RAATTY	1 cut(s)	38
XspI	CTAG	3 cut(s)	101, 185, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.