Rw7G030440

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
43222538 .. 43227633
5096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G030440.1

Sequence Viewer

Length: 1209 bp
ATGGATATAAAGGAAAACGGAGAAGAAGACCAGCAGATTGTGAATCCTTGGAAGGTGGAGGCCAAAGAAGGCGGCAAAATTGACTATGATAAGCTCATAGATCAATTTGGTTGCCAGAGGATCGATCAGTCTCTTGTTGACCGTGTCCGCCGTCTCACCTCACGTGCTCCGCACGTTTTCCTCCGTCGTGATGTCTTCTTCGCTCACCGGGACTTTAATGAGATTCTGGATGCTTATGAGAGAGGAGAGAAGTTCTATTTGTACACAGGAAGAGGGCCTTCCTCTGAGGCTTTGCATTTGGGGCATCTCATCCCCTTCATGTTCACCAAATATTTGCAAGATGCCTTCAAGGTCCCTCTTGTTATACAACTTACCGACGACGAGAAATGTATGTGGAAAAATCTCACAGTTGAAGAAAGCCAAAGACTTGCAAGGGAAAATGCTAAAGACATCATTGCTTGTGGTTTTGACGTAACAAGAACCTTTATCTTCTCTGATTTTGATTATGTTGGTGGTGCCTTCTACAAGAACATGGTTAGGGTCGGAAAGTGTGTCACTTATAATAAGGTTGTTGGCATATTTGGTTTCACTGGTGAAGATCATATAGGAAAAGTTAGTTTTCCTCCTGTACAGGCGGTACCATCATTTCCAAGTTCATTTCCACATCTCTTCTCTGGCCAAGATAATCTTCGTTGTTTAATACCCTGTGCAATTGACCAGGATCCTTATTTTAGAATGACCCGAGATGTTGCTCCACGCATTGGATATCACAAACCTGCTTTAATCGAGTCTCTATTCTTCCCTGCCCTACAGGGAGAAACAGGAAAAATGTCGGCTAGTGATCCCAATTCTGCCATCTATGTACTGATTCTGCAAAGGATATTAAGAGCAAGGTTTGCATATGACATAAACAAGTATGCATTTTCAGGTGGACAAGATACAATAGAGAAACACAGAGAGTTGGGAGCAAATCTCGAGGTAGACATTCCATATAAATATCTGAGATTTTTTCTGGATGATGACATCGAGCTTGATTATATAGGAAAGGAGTATGGTGCAGGTCGAATGTTGACAGGGGAAGTTAAGCAGAGGCTGATTCAAGTTTTGACAGAAATTGTGGAGAGACATCGTAGGGCTAGAGCTGCCGTCACCGATGAGATGGTGGACGCATTTATGGCAGTGAGGCCCCTCCCAAACATGTTCAACTAA

Protein Analysis

402

Amino Acids

46.21

Weight (kDa)

6.04

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1b PF00579 82 - 372 8.1e-14 tRNA synthetases class I (W and Y)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 561
Acc36I ACCTGC 2 cut(s) 784, 1049
Acc65I GGTACC 1 cut(s) 637
AccB1I GGYRCC 2 cut(s) 515, 637
AccB7I CCANNNNNTGG 1 cut(s) 761
AccI GTMKAC 1 cut(s) 981
AciI CCGC 4 cut(s) 72, 148, 170, 635
AclWI GGATC 4 cut(s) 128, 716, 729, 836
AcoI YGGCCR 1 cut(s) 676
AcvI CACGTG 1 cut(s) 164
AfaI GTAC 4 cut(s) 263, 630, 639, 864
AfiI CCNNNNNNNGG 1 cut(s) 761
AflIII ACRYGT 1 cut(s) 1197
AgsI TTSAA 4 cut(s) 349, 413, 1100, 1204
AjnI CCWGG 1 cut(s) 717
AjuI GAANNNNNNNTTGG 2 cut(s) 672, 704
AluBI AGCT 3 cut(s) 94, 1030, 1142
AluI AGCT 3 cut(s) 94, 1030, 1142
Alw21I GWGCWC 1 cut(s) 169
Alw26I GTCTC 4 cut(s) 135, 158, 795, 1117
AlwI GGATC 4 cut(s) 128, 716, 729, 836
AlwNI CAGNNNCTG 1 cut(s) 1093
Ama87I CYCGRG 2 cut(s) 741, 974
AoxI GGCC 4 cut(s) 60, 275, 676, 1184
ApeKI GCWGC 1 cut(s) 1142
Asp718I GGTACC 1 cut(s) 637
AspS9I GGNCC 3 cut(s) 275, 352, 1185
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 5 cut(s) 148, 197, 316, 605, 1141
AvaI CYCGRG 2 cut(s) 741, 974
AvaII GGWCC 1 cut(s) 352
BalI TGGCCA 1 cut(s) 678
BamHI GGATCC 1 cut(s) 721
BanI GGYRCC 2 cut(s) 515, 637
BbrPI CACGTG 1 cut(s) 164
BbsI GAAGAC 2 cut(s) 33, 187
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 1 cut(s) 1129
BccI CCATC 3 cut(s) 649, 863, 1153
BceAI ACGGC 2 cut(s) 135, 1130
BciT130I CCWGG 1 cut(s) 719
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 4 cut(s) 135, 158, 795, 1117
BfaI CTAG 2 cut(s) 837, 1137
BfmI CTRYAG 1 cut(s) 809
BfuAI ACCTGC 2 cut(s) 784, 1049
BisI GCNGC 2 cut(s) 73, 1143
BlsI GCNGC 2 cut(s) 74, 1144
Bme1390I CCNGG 2 cut(s) 209, 719
Bme18I GGWCC 1 cut(s) 352
BmeT110I CYCGRG 2 cut(s) 741, 974
BmgT120I GGNCC 3 cut(s) 275, 352, 1185
BmiI GGNNCC 5 cut(s) 354, 517, 639, 723, 1187
BmrFI CCNGG 2 cut(s) 209, 719
BmsI GCATC 3 cut(s) 220, 313, 331
BpiI GAAGAC 2 cut(s) 33, 187
BplI GAGNNNNNCTC 2 cut(s) 957, 989
BpuMI CCSGG 1 cut(s) 209
Bsa29I ATCGAT 1 cut(s) 123
BsaAI YACGTR 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 761
Bse1I ACTGG 1 cut(s) 595
Bse3DI GCAATG 1 cut(s) 453
BseBI CCWGG 1 cut(s) 719
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 3 cut(s) 235, 309, 1021
BseLI CCNNNNNNNGG 1 cut(s) 761
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 2 cut(s) 276, 992
BseNI ACTGG 1 cut(s) 595
BseRI GAGGAG 1 cut(s) 258
BseXI GCAGC 1 cut(s) 1129
BsgI GTGCAG 1 cut(s) 1077
BshFI GGCC 4 cut(s) 62, 277, 678, 1186
BshNI GGYRCC 2 cut(s) 515, 637
BshVI ATCGAT 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 169
BsiHKCI CYCGRG 2 cut(s) 741, 974
BsiSI CCGG 1 cut(s) 208
BslFI GGGAC 2 cut(s) 224, 338
BslI CCNNNNNNNGG 1 cut(s) 761
BsmAI GTCTC 4 cut(s) 135, 158, 795, 1117
BsmBI CGTCTC 1 cut(s) 158
BsmFI GGGAC 2 cut(s) 224, 338
BsnI GGCC 4 cut(s) 62, 277, 678, 1186
BsoBI CYCGRG 2 cut(s) 741, 974
Bsp1286I GDGCHC 1 cut(s) 169
Bsp1407I TGTACA 2 cut(s) 261, 628
Bsp143I GATC 6 cut(s) 100, 120, 124, 598, 721, 841
BspACI CCGC 4 cut(s) 72, 148, 170, 635
BspANI GGCC 4 cut(s) 62, 277, 678, 1186
BspCNI CTCAG 2 cut(s) 277, 993
BspDI ATCGAT 1 cut(s) 123
BspLI GGNNCC 5 cut(s) 354, 517, 639, 723, 1187
BspMI ACCTGC 2 cut(s) 784, 1049
BspPI GGATC 4 cut(s) 128, 716, 729, 836
BspT107I GGYRCC 2 cut(s) 515, 637
BsrDI GCAATG 1 cut(s) 453
BsrGI TGTACA 2 cut(s) 261, 628
BsrI ACTGG 1 cut(s) 595
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 6 cut(s) 100, 120, 124, 598, 721, 841
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 719
Bst4CI ACNGT 2 cut(s) 143, 409
Bst6I CTCTTC 2 cut(s) 265, 674
BstAPI GCANNNNNTGC 1 cut(s) 896
BstAUI TGTACA 2 cut(s) 261, 628
BstBAI YACGTR 1 cut(s) 164
BstDEI CTNAG 2 cut(s) 285, 1001
BstF5I GGATG 3 cut(s) 235, 309, 1021
BstKTI GATC 6 cut(s) 103, 123, 127, 601, 724, 844
BstMAI GTCTC 4 cut(s) 135, 158, 795, 1117
BstMBI GATC 6 cut(s) 100, 120, 124, 598, 721, 841
BstMWI GCNNNNNNNGC 4 cut(s) 301, 896, 1142, 1175
BstNI CCWGG 1 cut(s) 719
BstNSI RCATGY 1 cut(s) 1201
BstSCI CCNGG 2 cut(s) 207, 717
BstSFI CTRYAG 1 cut(s) 809
BstV1I GCAGC 1 cut(s) 1129
BstV2I GAAGAC 2 cut(s) 33, 187
BstX2I RGATCY 1 cut(s) 721
BstYI RGATCY 1 cut(s) 721
Bsu15I ATCGAT 1 cut(s) 123
BsuRI GGCC 4 cut(s) 62, 277, 678, 1186
BsuTUI ATCGAT 1 cut(s) 123
BtsCI GGATG 3 cut(s) 235, 309, 1021
BtsI GCAGTG 1 cut(s) 1185
BtsIMutI CAGTG 2 cut(s) 588, 1185
BveI ACCTGC 2 cut(s) 784, 1049
CaiI CAGNNNCTG 1 cut(s) 1093
Cfr13I GGNCC 3 cut(s) 275, 352, 1185
ClaI ATCGAT 1 cut(s) 123
CseI GACGC 1 cut(s) 1175
Csp6I GTAC 4 cut(s) 262, 629, 638, 863
CviAII CATG 3 cut(s) 319, 532, 1198
CviQI GTAC 4 cut(s) 262, 629, 638, 863
DdeI CTNAG 2 cut(s) 285, 1001
DpnI GATC 6 cut(s) 102, 122, 126, 600, 723, 843
DpnII GATC 6 cut(s) 100, 120, 124, 598, 721, 841
EaeI YGGCCR 1 cut(s) 676
Eam1104I CTCTTC 2 cut(s) 265, 674
EarI CTCTTC 2 cut(s) 265, 674
EciI GGCGGA 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 47
Eco32I GATATC 1 cut(s) 767
Eco47I GGWCC 1 cut(s) 352
Eco72I CACGTG 1 cut(s) 164
Eco88I CYCGRG 2 cut(s) 741, 974
EcoO109I RGGNCCY 3 cut(s) 275, 352, 1185
EcoRII CCWGG 1 cut(s) 717
EcoRV GATATC 1 cut(s) 767
EcoT14I CCWWGG 1 cut(s) 47
EcoT22I ATGCAT 1 cut(s) 922
ErhI CCWWGG 1 cut(s) 47
Esp3I CGTCTC 1 cut(s) 158
FaeI CATG 3 cut(s) 322, 535, 1201
FalI AAGNNNNNCTT 4 cut(s) 262, 294, 672, 704
FaqI GGGAC 2 cut(s) 224, 338
FatI CATG 3 cut(s) 318, 531, 1197
FauNDI CATATG 1 cut(s) 901
FblI GTMKAC 1 cut(s) 981
Fnu4HI GCNGC 2 cut(s) 73, 1143
FokI GGATG 3 cut(s) 242, 296, 1028
Fsp4HI GCNGC 2 cut(s) 73, 1143
FspBI CTAG 2 cut(s) 837, 1137
GluI GCNGC 2 cut(s) 73, 1143
HaeIII GGCC 4 cut(s) 62, 277, 678, 1186
HapII CCGG 1 cut(s) 208
HgaI GACGC 1 cut(s) 1175
Hin1II CATG 3 cut(s) 322, 535, 1201
HincII GTYRAC 2 cut(s) 139, 1071
HindII GTYRAC 2 cut(s) 139, 1071
HinfI GANTC 5 cut(s) 43, 223, 788, 868, 1096
HpaII CCGG 1 cut(s) 208
HphI GGTGA 5 cut(s) 148, 197, 316, 605, 1141
Hpy166II GTNNAC 7 cut(s) 139, 264, 324, 932, 982, 1071, 1165
Hpy188I TCNGA 4 cut(s) 286, 496, 545, 1002
Hpy188III TCNNGA 4 cut(s) 188, 227, 974, 1013
Hpy8I GTNNAC 7 cut(s) 139, 264, 324, 932, 982, 1071, 1165
Hpy99I CGWCG 3 cut(s) 189, 380, 383
HpyAV CCTTC 6 cut(s) 46, 62, 288, 325, 355, 529
HpyCH4III ACNGT 2 cut(s) 143, 409
HpyCH4IV ACGT 3 cut(s) 163, 174, 471
HpyCH4V TGCA 8 cut(s) 295, 337, 431, 710, 874, 899, 920, 1058
HpyF10VI GCNNNNNNNGC 4 cut(s) 301, 896, 1142, 1175
HpyF3I CTNAG 2 cut(s) 285, 1001
HpySE526I ACGT 3 cut(s) 163, 174, 471
Hsp92II CATG 3 cut(s) 322, 535, 1201
KpnI GGTACC 1 cut(s) 641
Kzo9I GATC 6 cut(s) 100, 120, 124, 598, 721, 841
LmnI GCTCC 3 cut(s) 172, 757, 965
Lsp1109I GCAGC 1 cut(s) 1129
LweI GCATC 3 cut(s) 220, 313, 331
MaeI CTAG 2 cut(s) 837, 1137
MaeII ACGT 3 cut(s) 163, 174, 471
MaeIII GTNAC 3 cut(s) 472, 553, 1147
MalI GATC 6 cut(s) 102, 122, 126, 600, 723, 843
MboI GATC 6 cut(s) 100, 120, 124, 598, 721, 841
MfeI CAATTG 1 cut(s) 711
MflI RGATCY 1 cut(s) 721
MhlI GDGCHC 1 cut(s) 169
MlsI TGGCCA 1 cut(s) 678
MluCI AATT 5 cut(s) 78, 104, 711, 847, 1113
MluNI TGGCCA 1 cut(s) 678
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 1 cut(s) 523
Mox20I TGGCCA 1 cut(s) 678
Mph1103I ATGCAT 1 cut(s) 922
MscI TGGCCA 1 cut(s) 678
MseI TTAA 5 cut(s) 216, 698, 782, 884, 1083
Msp20I TGGCCA 1 cut(s) 678
MspI CCGG 1 cut(s) 208
MspR9I CCNGG 2 cut(s) 209, 719
MunI CAATTG 1 cut(s) 711
MvaI CCWGG 1 cut(s) 719
MwoI GCNNNNNNNGC 4 cut(s) 301, 896, 1142, 1175
NciI CCSGG 1 cut(s) 209
NdeI CATATG 1 cut(s) 901
NdeII GATC 6 cut(s) 100, 120, 124, 598, 721, 841
NlaIII CATG 3 cut(s) 322, 535, 1201
NlaIV GGNNCC 5 cut(s) 354, 517, 639, 723, 1187
NmuCI GTSAC 2 cut(s) 553, 1147
NsiI ATGCAT 1 cut(s) 922
NspI RCATGY 1 cut(s) 1201
PaeR7I CTCGAG 1 cut(s) 974
PciI ACATGT 1 cut(s) 1197
PfeI GAWTC 4 cut(s) 43, 223, 868, 1096
PflFI GACNNNGTC 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 761
PkrI GCNGC 2 cut(s) 74, 1144
PleI GAGTC 1 cut(s) 796
PmaCI CACGTG 1 cut(s) 164
PmlI CACGTG 1 cut(s) 164
PpsI GAGTC 1 cut(s) 796
Ppu21I YACGTR 1 cut(s) 164
PpuMI RGGWCCY 1 cut(s) 352
PscI ACATGT 1 cut(s) 1197
PsiI TTATAA 1 cut(s) 561
Psp5II RGGWCCY 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 717
PspCI CACGTG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 717
PspN4I GGNNCC 5 cut(s) 354, 517, 639, 723, 1187
PspPI GGNCC 3 cut(s) 275, 352, 1185
PspPPI RGGWCCY 1 cut(s) 352
PstNI CAGNNNCTG 1 cut(s) 1093
PsuI RGATCY 1 cut(s) 721
PsyI GACNNNGTC 1 cut(s) 143
RsaI GTAC 4 cut(s) 263, 630, 639, 864
RsaNI GTAC 4 cut(s) 262, 629, 638, 863
SaqAI TTAA 5 cut(s) 216, 698, 782, 884, 1083
SatI GCNGC 2 cut(s) 73, 1143
Sau3AI GATC 6 cut(s) 100, 120, 124, 598, 721, 841
Sau96I GGNCC 3 cut(s) 275, 352, 1185
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 2 cut(s) 209, 719
SduI GDGCHC 1 cut(s) 169
SfaNI GCATC 3 cut(s) 220, 313, 331
SfcI CTRYAG 1 cut(s) 809
Sfr274I CTCGAG 1 cut(s) 974
SinI GGWCC 1 cut(s) 352
SlaI CTCGAG 1 cut(s) 974
SmlI CTYRAG 1 cut(s) 974
SmoI CTYRAG 1 cut(s) 974
Sse9I AATT 5 cut(s) 78, 104, 711, 847, 1113
SsiI CCGC 4 cut(s) 72, 148, 170, 635
SspI AATATT 1 cut(s) 332
SspMI CTAG 2 cut(s) 837, 1137
StyD4I CCNGG 2 cut(s) 207, 717
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 143, 409
TaiI ACGT 3 cut(s) 166, 177, 474
TaqI TCGA 5 cut(s) 123, 786, 975, 1026, 1063
TasI AATT 5 cut(s) 78, 104, 711, 847, 1113
TatI WGTACW 3 cut(s) 261, 628, 862
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 4 cut(s) 43, 223, 868, 1096
Tru1I TTAA 5 cut(s) 216, 698, 782, 884, 1083
Tru9I TTAA 5 cut(s) 216, 698, 782, 884, 1083
TscAI CASTG 2 cut(s) 595, 1185
TseFI GTSAC 2 cut(s) 553, 1147
TseI GCWGC 1 cut(s) 1142
Tsp45I GTSAC 2 cut(s) 553, 1147
TspDTI ATGAA 2 cut(s) 307, 645
TspGWI ACGGA 2 cut(s) 33, 173
TspRI CASTG 2 cut(s) 595, 1185
Tth111I GACNNNGTC 1 cut(s) 143
Van91I CCANNNNNTGG 1 cut(s) 761
VpaK11BI GGWCC 1 cut(s) 352
XceI RCATGY 1 cut(s) 1201
XhoI CTCGAG 1 cut(s) 974
XmiI GTMKAC 1 cut(s) 981
XspI CTAG 2 cut(s) 837, 1137
Zsp2I ATGCAT 1 cut(s) 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.