Rmu_sc0007422.1_g000005

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007422.1
Physical Location & Seq
Forward (+)
32323 .. 38787
6465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007422.1_g000005.1.cds

Sequence Viewer

Length: 1266 bp
atggtttgtcctagtatgaagggaactccaagaaatgggtggtggtgcggccgaaaatggctagaaaacgaaaactcgccggagacccgaaatggccaccgtgaacaccaccttgctgcacctcctacggcccaaatcgcaccaccaaaataccacagacatcaagaggagaaagagaggatcagttcggttgccagaggatcgatcaatctctcgtcgagcgtgtccgccgtctcacctcacgttttcctccgtcgcgacgtcttcttcgctcaccgggacttcaatgagattctggatgcttatgagagaggagagaagttctatttgtacacaggaagagggccttcctcagaggctttgcatttggggcatctcatccccttcatgttcaccaaatatttgcaagatgcctttaaggtccctctcgttatacaacttaccgacgatgagaaatgtatgtggaaaaatatcacagttgaagaaagccagagacttgcaagggaaaatgctaaagacatcattgcttgtggttttgacataacaagaacctttatcttctccgattttgattatgttggtggtgccttctacaagaaaatggtgaaggtcggaaagtgtgtcacctataataaggttgttggcatatttggtttcaccggtgaagatcatataggaaaagttagttttccacctgtacaggcggtaccatcatttccaagttcatttccacatctcttctctggccaagataatcttcgttgtttaataccctgtgcgattgaccaggatccttattttagaatgacccgagatgttgctccacgcattggatatcacaagcctgctttaatagagtctctattcttccctgccctccagggagaaacaggaaaaatgtcggctagtgatccaaattctgccatctacgtaactgattctgcaaaggatattaagagcaagataaacaagtttgcattttcagggggacaagatacaatagagaaacacagagagttgggagcagatctcgaggtagacattccctataaatatctgaaattttttctggatgatgacattgagcttgcttatataggaaaggagtatggtgcaggtcgaatgttgacaggggaagtgaagcagaggctcattcaagttttgacagaaattgtggagagacatcgtagggctagagctgctgtcactgatgagatggtggacgcatttatggcagtgaggcccctcccaaacatgttcgactaa

Protein Analysis

421

Amino Acids

47.81

Weight (kDa)

7.23

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 264
Acc36I ACCTGC 1 cut(s) 1106
Acc65I GGTACC 1 cut(s) 706
AccB1I GGYRCC 2 cut(s) 584, 706
AccB7I CCANNNNNTGG 2 cut(s) 35, 830
AccI GTMKAC 1 cut(s) 1038
AccII CGCG 1 cut(s) 258
AciI CCGC 3 cut(s) 48, 228, 704
AclWI GGATC 5 cut(s) 188, 208, 785, 798, 905
AcoI YGGCCR 3 cut(s) 49, 94, 745
AcsI RAATTY 2 cut(s) 916, 1061
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 3 cut(s) 332, 699, 708
AfiI CCNNNNNNNGG 2 cut(s) 35, 830
AflIII ACRYGT 1 cut(s) 1254
AgeI ACCGGT 1 cut(s) 659
AgsI TTSAA 3 cut(s) 286, 482, 1157
AjnI CCWGG 2 cut(s) 786, 879
AjuI GAANNNNNNNTTGG 2 cut(s) 741, 773
AluBI AGCT 2 cut(s) 1087, 1199
AluI AGCT 2 cut(s) 1087, 1199
Alw26I GTCTC 5 cut(s) 77, 238, 487, 864, 1174
AlwI GGATC 5 cut(s) 188, 208, 785, 798, 905
Ama87I CYCGRG 2 cut(s) 810, 1031
AoxI GGCC 6 cut(s) 49, 94, 129, 344, 745, 1241
ApeKI GCWGC 2 cut(s) 116, 1199
ApoI RAATTY 2 cut(s) 916, 1061
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
AsiGI ACCGGT 1 cut(s) 659
Asp718I GGTACC 1 cut(s) 706
AspS9I GGNCC 4 cut(s) 130, 344, 421, 1242
AsuC2I CCSGG 1 cut(s) 278
AsuHPI GGTGA 7 cut(s) 228, 266, 385, 616, 616, 649, 674
AvaI CYCGRG 2 cut(s) 810, 1031
AvaII GGWCC 1 cut(s) 421
BalI TGGCCA 2 cut(s) 96, 747
BamHI GGATCC 1 cut(s) 790
BanI GGYRCC 2 cut(s) 584, 706
BbsI GAAGAC 1 cut(s) 256
BbvI GCAGC 2 cut(s) 103, 1186
BccI CCATC 3 cut(s) 718, 932, 1210
BceAI ACGGC 2 cut(s) 144, 215
BciT130I CCWGG 2 cut(s) 788, 881
BcnI CCSGG 1 cut(s) 278
BcoDI GTCTC 5 cut(s) 77, 238, 487, 864, 1174
BfaI CTAG 4 cut(s) 12, 62, 906, 1194
BfuAI ACCTGC 1 cut(s) 1106
BglII AGATCT 1 cut(s) 1027
BisI GCNGC 3 cut(s) 49, 117, 1200
BlsI GCNGC 3 cut(s) 50, 118, 1201
Bme1390I CCNGG 3 cut(s) 278, 788, 881
Bme18I GGWCC 1 cut(s) 421
BmeT110I CYCGRG 2 cut(s) 810, 1031
BmgT120I GGNCC 4 cut(s) 130, 344, 421, 1242
BmiI GGNNCC 5 cut(s) 423, 586, 708, 792, 1244
BmrFI CCNGG 3 cut(s) 278, 788, 881
BmsI GCATC 3 cut(s) 289, 382, 400
BpiI GAAGAC 1 cut(s) 256
BplI GAGNNNNNCTC 2 cut(s) 1014, 1046
BpmI CTGGAG 1 cut(s) 863
BpuMI CCSGG 1 cut(s) 278
Bsa29I ATCGAT 1 cut(s) 203
BsaAI YACGTR 1 cut(s) 931
BsaHI GRCGYC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 880
BsaWI WCCGGW 1 cut(s) 659
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 830
Bse118I RCCGGY 1 cut(s) 659
Bse3DI GCAATG 1 cut(s) 522
BseBI CCWGG 2 cut(s) 788, 881
BseCI ATCGAT 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 880
BseGI GGATG 3 cut(s) 304, 378, 1078
BseLI CCNNNNNNNGG 2 cut(s) 35, 830
BseMI GCAATG 1 cut(s) 522
BseMII CTCAG 1 cut(s) 366
BseRI GAGGAG 2 cut(s) 182, 327
BseX3I CGGCCG 1 cut(s) 49
BseXI GCAGC 2 cut(s) 103, 1186
BsgI GTGCAG 2 cut(s) 102, 1134
Bsh1236I CGCG 1 cut(s) 258
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 6 cut(s) 51, 96, 131, 346, 747, 1243
BshNI GGYRCC 2 cut(s) 584, 706
BshTI ACCGGT 1 cut(s) 659
BshVI ATCGAT 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 52
BsiHKCI CYCGRG 2 cut(s) 810, 1031
BsiSI CCGG 3 cut(s) 80, 277, 660
BslFI GGGAC 3 cut(s) 293, 407, 1002
BslI CCNNNNNNNGG 2 cut(s) 35, 830
BsmAI GTCTC 5 cut(s) 77, 238, 487, 864, 1174
BsmBI CGTCTC 1 cut(s) 238
BsmFI GGGAC 3 cut(s) 293, 407, 1002
BsnI GGCC 6 cut(s) 51, 96, 131, 346, 747, 1243
Bso31I GGTCTC 1 cut(s) 77
BsoBI CYCGRG 2 cut(s) 810, 1031
Bsp1407I TGTACA 2 cut(s) 330, 697
Bsp143I GATC 7 cut(s) 180, 200, 204, 667, 790, 910, 1027
Bsp68I TCGCGA 1 cut(s) 258
BspACI CCGC 3 cut(s) 48, 228, 704
BspANI GGCC 6 cut(s) 51, 96, 131, 346, 747, 1243
BspCNI CTCAG 1 cut(s) 365
BspDI ATCGAT 1 cut(s) 203
BspFNI CGCG 1 cut(s) 258
BspLI GGNNCC 5 cut(s) 423, 586, 708, 792, 1244
BspMI ACCTGC 1 cut(s) 1106
BspPI GGATC 5 cut(s) 188, 208, 785, 798, 905
BspT107I GGYRCC 2 cut(s) 584, 706
BspTNI GGTCTC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 522
BsrFI RCCGGY 1 cut(s) 659
BsrGI TGTACA 2 cut(s) 330, 697
BssAI RCCGGY 1 cut(s) 659
BssECI CCNNGG 1 cut(s) 880
BssMI GATC 7 cut(s) 180, 200, 204, 667, 790, 910, 1027
BssNI GRCGYC 1 cut(s) 261
Bst2UI CCWGG 2 cut(s) 788, 881
Bst4CI ACNGT 2 cut(s) 101, 478
Bst6I CTCTTC 2 cut(s) 334, 743
BstACI GRCGYC 1 cut(s) 261
BstAUI TGTACA 2 cut(s) 330, 697
BstBAI YACGTR 1 cut(s) 931
BstC8I GCNNGC 2 cut(s) 846, 1089
BstDEI CTNAG 1 cut(s) 352
BstF5I GGATG 3 cut(s) 304, 378, 1078
BstFNI CGCG 1 cut(s) 258
BstKTI GATC 7 cut(s) 183, 203, 207, 670, 793, 913, 1030
BstMAI GTCTC 5 cut(s) 77, 238, 487, 864, 1174
BstMBI GATC 7 cut(s) 180, 200, 204, 667, 790, 910, 1027
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 4 cut(s) 137, 370, 1199, 1232
BstNI CCWGG 2 cut(s) 788, 881
BstNSI RCATGY 1 cut(s) 1258
BstSCI CCNGG 3 cut(s) 276, 786, 879
BstSNI TACGTA 1 cut(s) 931
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 2 cut(s) 103, 1186
BstV2I GAAGAC 1 cut(s) 256
BstX2I RGATCY 2 cut(s) 790, 1027
BstYI RGATCY 2 cut(s) 790, 1027
BstZI CGGCCG 1 cut(s) 49
Bsu15I ATCGAT 1 cut(s) 203
BsuRI GGCC 6 cut(s) 51, 96, 131, 346, 747, 1243
BsuTUI ATCGAT 1 cut(s) 203
BtsCI GGATG 3 cut(s) 304, 378, 1078
BtsI GCAGTG 1 cut(s) 1242
BtsIMutI CAGTG 2 cut(s) 1206, 1242
BtuMI TCGCGA 1 cut(s) 258
BveI ACCTGC 1 cut(s) 1106
Cac8I GCNNGC 2 cut(s) 846, 1089
Cfr10I RCCGGY 1 cut(s) 659
Cfr13I GGNCC 4 cut(s) 130, 344, 421, 1242
ClaI ATCGAT 1 cut(s) 203
CseI GACGC 1 cut(s) 1232
Csp6I GTAC 3 cut(s) 331, 698, 707
CspAI ACCGGT 1 cut(s) 659
CviAII CATG 2 cut(s) 388, 1255
CviQI GTAC 3 cut(s) 331, 698, 707
DdeI CTNAG 1 cut(s) 352
DpnI GATC 7 cut(s) 182, 202, 206, 669, 792, 912, 1029
DpnII GATC 7 cut(s) 180, 200, 204, 667, 790, 910, 1027
EaeI YGGCCR 3 cut(s) 49, 94, 745
EagI CGGCCG 1 cut(s) 49
Eam1104I CTCTTC 2 cut(s) 334, 743
EarI CTCTTC 2 cut(s) 334, 743
EciI GGCGGA 1 cut(s) 217
EclXI CGGCCG 1 cut(s) 49
Eco105I TACGTA 1 cut(s) 931
Eco31I GGTCTC 1 cut(s) 77
Eco32I GATATC 1 cut(s) 836
Eco47I GGWCC 1 cut(s) 421
Eco52I CGGCCG 1 cut(s) 49
Eco88I CYCGRG 2 cut(s) 810, 1031
EcoO109I RGGNCCY 3 cut(s) 344, 421, 1242
EcoRII CCWGG 2 cut(s) 786, 879
EcoRV GATATC 1 cut(s) 836
Esp3I CGTCTC 1 cut(s) 238
FaeI CATG 2 cut(s) 391, 1258
FalI AAGNNNNNCTT 4 cut(s) 331, 363, 741, 773
FaqI GGGAC 3 cut(s) 293, 407, 1002
FatI CATG 2 cut(s) 387, 1254
FblI GTMKAC 1 cut(s) 1038
Fnu4HI GCNGC 3 cut(s) 49, 117, 1200
FokI GGATG 3 cut(s) 311, 365, 1085
Fsp4HI GCNGC 3 cut(s) 49, 117, 1200
FspBI CTAG 4 cut(s) 12, 62, 906, 1194
GluI GCNGC 3 cut(s) 49, 117, 1200
GsuI CTGGAG 1 cut(s) 863
HaeIII GGCC 6 cut(s) 51, 96, 131, 346, 747, 1243
HapII CCGG 3 cut(s) 80, 277, 660
HgaI GACGC 1 cut(s) 1232
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 2 cut(s) 391, 1258
HincII GTYRAC 1 cut(s) 1128
HindII GTYRAC 1 cut(s) 1128
HinfI GANTC 3 cut(s) 292, 857, 938
HpaII CCGG 3 cut(s) 80, 277, 660
HphI GGTGA 7 cut(s) 228, 266, 385, 616, 616, 649, 674
Hpy166II GTNNAC 6 cut(s) 104, 333, 393, 1039, 1128, 1222
Hpy188I TCNGA 4 cut(s) 355, 565, 614, 1059
Hpy188III TCNNGA 5 cut(s) 164, 257, 296, 1031, 1070
Hpy8I GTNNAC 6 cut(s) 104, 333, 393, 1039, 1128, 1222
Hpy99I CGWCG 4 cut(s) 220, 258, 263, 449
HpyAV CCTTC 5 cut(s) 13, 357, 394, 598, 601
HpyCH4III ACNGT 2 cut(s) 101, 478
HpyCH4IV ACGT 3 cut(s) 243, 261, 930
HpyCH4V TGCA 7 cut(s) 119, 364, 406, 500, 944, 977, 1115
HpyF10VI GCNNNNNNNGC 4 cut(s) 137, 370, 1199, 1232
HpyF3I CTNAG 1 cut(s) 352
HpySE526I ACGT 3 cut(s) 243, 261, 930
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 2 cut(s) 391, 1258
KpnI GGTACC 1 cut(s) 710
Kzo9I GATC 7 cut(s) 180, 200, 204, 667, 790, 910, 1027
LmnI GCTCC 2 cut(s) 826, 1022
Lsp1109I GCAGC 2 cut(s) 103, 1186
LweI GCATC 3 cut(s) 289, 382, 400
MaeI CTAG 4 cut(s) 12, 62, 906, 1194
MaeII ACGT 3 cut(s) 243, 261, 930
MaeIII GTNAC 3 cut(s) 622, 931, 1204
MalI GATC 7 cut(s) 182, 202, 206, 669, 792, 912, 1029
MboI GATC 7 cut(s) 180, 200, 204, 667, 790, 910, 1027
MboII GAAGA 9 cut(s) 256, 259, 351, 494, 550, 677, 730, 749, 859
MflI RGATCY 2 cut(s) 790, 1027
MlsI TGGCCA 2 cut(s) 96, 747
MluCI AATT 3 cut(s) 916, 1061, 1170
MluNI TGGCCA 2 cut(s) 96, 747
MlyI GAGTC 1 cut(s) 866
MmeI TCCRAC 1 cut(s) 592
Mox20I TGGCCA 2 cut(s) 96, 747
MscI TGGCCA 2 cut(s) 96, 747
MseI TTAA 4 cut(s) 417, 767, 851, 954
Msp20I TGGCCA 2 cut(s) 96, 747
MspI CCGG 3 cut(s) 80, 277, 660
MspR9I CCNGG 3 cut(s) 278, 788, 881
MvaI CCWGG 2 cut(s) 788, 881
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 4 cut(s) 137, 370, 1199, 1232
NciI CCSGG 1 cut(s) 278
NdeII GATC 7 cut(s) 180, 200, 204, 667, 790, 910, 1027
NlaIII CATG 2 cut(s) 391, 1258
NlaIV GGNNCC 5 cut(s) 423, 586, 708, 792, 1244
NmuCI GTSAC 2 cut(s) 622, 1204
NruI TCGCGA 1 cut(s) 258
NspI RCATGY 1 cut(s) 1258
PaeR7I CTCGAG 1 cut(s) 1031
PciI ACATGT 1 cut(s) 1254
PfeI GAWTC 2 cut(s) 292, 938
PflMI CCANNNNNTGG 2 cut(s) 35, 830
PinAI ACCGGT 1 cut(s) 659
PkrI GCNGC 3 cut(s) 50, 118, 1201
PleI GAGTC 1 cut(s) 865
PpsI GAGTC 1 cut(s) 865
Ppu21I YACGTR 1 cut(s) 931
PpuMI RGGWCCY 1 cut(s) 421
PscI ACATGT 1 cut(s) 1254
Psp5II RGGWCCY 1 cut(s) 421
Psp6I CCWGG 2 cut(s) 786, 879
PspGI CCWGG 2 cut(s) 786, 879
PspN4I GGNNCC 5 cut(s) 423, 586, 708, 792, 1244
PspPI GGNCC 4 cut(s) 130, 344, 421, 1242
PspPPI RGGWCCY 1 cut(s) 421
PsuI RGATCY 2 cut(s) 790, 1027
RruI TCGCGA 1 cut(s) 258
RsaI GTAC 3 cut(s) 332, 699, 708
RsaNI GTAC 3 cut(s) 331, 698, 707
SaqAI TTAA 4 cut(s) 417, 767, 851, 954
SatI GCNGC 3 cut(s) 49, 117, 1200
Sau3AI GATC 7 cut(s) 180, 200, 204, 667, 790, 910, 1027
Sau96I GGNCC 4 cut(s) 130, 344, 421, 1242
SchI GAGTC 1 cut(s) 866
ScrFI CCNGG 3 cut(s) 278, 788, 881
SfaNI GCATC 3 cut(s) 289, 382, 400
Sfr274I CTCGAG 1 cut(s) 1031
SgrAI CRCCGGYG 1 cut(s) 659
SinI GGWCC 1 cut(s) 421
SlaI CTCGAG 1 cut(s) 1031
SmlI CTYRAG 1 cut(s) 1031
SmoI CTYRAG 1 cut(s) 1031
SnaBI TACGTA 1 cut(s) 931
Sse9I AATT 3 cut(s) 916, 1061, 1170
SsiI CCGC 3 cut(s) 48, 228, 704
SspI AATATT 1 cut(s) 401
SspMI CTAG 4 cut(s) 12, 62, 906, 1194
StyD4I CCNGG 3 cut(s) 276, 786, 879
TaaI ACNGT 2 cut(s) 101, 478
TaiI ACGT 3 cut(s) 246, 264, 933
TaqI TCGA 5 cut(s) 203, 218, 1032, 1120, 1260
TasI AATT 3 cut(s) 916, 1061, 1170
TatI WGTACW 2 cut(s) 330, 697
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 2 cut(s) 292, 938
Tru1I TTAA 4 cut(s) 417, 767, 851, 954
Tru9I TTAA 4 cut(s) 417, 767, 851, 954
TscAI CASTG 2 cut(s) 1213, 1242
TseFI GTSAC 2 cut(s) 622, 1204
TseI GCWGC 2 cut(s) 116, 1199
Tsp45I GTSAC 2 cut(s) 622, 1204
TspDTI ATGAA 3 cut(s) 32, 376, 714
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 2 cut(s) 1213, 1242
Van91I CCANNNNNTGG 2 cut(s) 35, 830
VpaK11BI GGWCC 1 cut(s) 421
XapI RAATTY 2 cut(s) 916, 1061
XceI RCATGY 1 cut(s) 1258
XcmI CCANNNNNNNNNTGG 1 cut(s) 36
XhoI CTCGAG 1 cut(s) 1031
XmiI GTMKAC 1 cut(s) 1038
XspI CTAG 4 cut(s) 12, 62, 906, 1194
ZraI GACGTC 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.