Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001148

Physical Location & Seq

Genomic Coordinates Reverse (-)

37575950 .. 37576330

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19621

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTTCACTAAATATTTGCAAGATGCCTTCAAGGTTCCACTCGTTATACAACTCACTGATGACAAGAAGTGCATGTGGAAAAATCTCACCGTGGAAGAAAGCCAGAGACTTGCTAGGGAGAATGCTAAAGACATTATTGCTTGTGGCTTTGACATAACAAGAACCTTCATCTTCTCTAATTTTGATTATGTTGGGGGTGACTTCCACAAAAACATGGTGAAGGTGGGAAAGTGTGTGACCTACAATAAGGTTGCTGGCATATTTGGTTTCACTGGTGAAGATCATATAGGAAAAGTTAGTTTTCCACCAATAAAGGCGGTTCCGTCATTTCGTAGTTCATTTCCACATCTTTTCTCCGGTCAAGAAACCGTCGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004830 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006436 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

126

Amino Acids

14.22

Weight (kDa)

8.79

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04600 AT3G04600 AT3G04600
fragaria_vesca	FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_5g27321
malus_domestica	MD04G1236500.v1.1 MD12G1255800.v1.1
prunus_persica	Prupe.7G057000_v2.0.a1 Prupe.7G057800_v2.0.a1
pyrus_communis	pycom04g21040 pycom12g23440
rosa_chinensis	RchiOBHm_Chr3g0493481 RchiOBHm_Chr7g0219201 RchiOBHm_Chr7g0219221 RchiOBHm_Chr7g0223011
rosa_laevigata	RLG00000002003 RLG00000002302 RLG00000002303 RLG00000022713
rosa_multiflora	Rmu_sc0000868.1_g000014 Rmu_sc0006373.1_g000002 Rmu_sc0006514.1_g000024 Rmu_sc0007422.1_g000005 Rmu_sc0009785.1_g000024 Rmu_sc0039697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234440 Rroxscaffold_3G00236350 Rroxscaffold_3G00237890 Rroxscaffold_3G00237970 Rroxscaffold_3G00238030 Rroxscaffold_3G00238960 Rroxscaffold_3G00238970 Rroxscaffold_5G00377610 Rroxscaffold_6G00391570 Rroxscaffold_7G00199590 Rroxscaffold_7G00199600
rosa_rugosa	Rorug07G0177500 Rorug07G0177500 Rorug07G0212800
rosa_samantha	Rh3AG310200 Rh3BG346300 Rh3CG344200 Rh3DG345400 Rh7AG319000 Rh7AG326700 Rh7AG357900 Rh7BG310900 Rh7BG346100 Rh7CG376000 Rh7DG318100 Rh7DG318200 Rh7DG352800
rosa_wichuraiana	Rw3G027260 Rw7G027160 Rw7G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	317
AgsI	TTSAA	1 cut(s)	31
Alw26I	GTCTC	1 cut(s)	100
AsuHPI	GGTGA	4 cut(s)	79, 209, 229, 287
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	114
BmiI	GGNNCC	2 cut(s)	36, 321
BmsI	GCATC	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	357
BsmAI	GTCTC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	1 cut(s)	317
BspLI	GGNNCC	2 cut(s)	36, 321
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	1 cut(s)	280
Bst4CI	ACNGT	2 cut(s)	91, 370
BstC8I	GCNNGC	1 cut(s)	256
BstDSI	CCRYGG	1 cut(s)	90
BstKTI	GATC	1 cut(s)	283
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	280
BstNSI	RCATGY	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	90
BtsIMutI	CAGTG	2 cut(s)	54, 270
Cac8I	GCNNGC	1 cut(s)	256
CviAII	CATG	2 cut(s)	73, 214
CviJI	RGCY	2 cut(s)	102, 147
CviKI_1	RGCY	2 cut(s)	102, 147
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
FaeI	CATG	2 cut(s)	76, 217
FaiI	YATR	8 cut(s)	47, 74, 155, 189, 215, 260, 285, 287
FatI	CATG	2 cut(s)	72, 213
FspBI	CTAG	1 cut(s)	114
HapII	CCGG	1 cut(s)	357
Hin1II	CATG	2 cut(s)	76, 217
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	4 cut(s)	79, 209, 229, 287
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	3 cut(s)	37, 175, 214
HpyCH4III	ACNGT	2 cut(s)	91, 370
HpyCH4V	TGCA	2 cut(s)	19, 72
Hsp92II	CATG	2 cut(s)	76, 217
Kzo9I	GATC	1 cut(s)	280
LpnPI	CCDG	4 cut(s)	116, 240, 258, 370
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	197, 235
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	3 cut(s)	107, 163, 290
MluCI	AATT	1 cut(s)	178
MseI	TTAA	1 cut(s)	379
MspI	CCGG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	127
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	2 cut(s)	76, 217
NlaIV	GGNNCC	2 cut(s)	36, 321
NmuCI	GTSAC	2 cut(s)	197, 235
NspI	RCATGY	1 cut(s)	76
PctI	GAATGC	1 cut(s)	127
PspN4I	GGNNCC	2 cut(s)	36, 321
SaqAI	TTAA	1 cut(s)	379
Sau3AI	GATC	1 cut(s)	280
SetI	ASST	5 cut(s)	36, 167, 225, 242, 252
SfaNI	GCATC	1 cut(s)	13
Sse9I	AATT	1 cut(s)	178
SsiI	CCGC	1 cut(s)	317
SspI	AATATT	1 cut(s)	14
SspMI	CTAG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	91, 370
TasI	AATT	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	379
Tru9I	TTAA	1 cut(s)	379
TscAI	CASTG	2 cut(s)	61, 277
TseFI	GTSAC	2 cut(s)	197, 235
Tsp45I	GTSAC	2 cut(s)	197, 235
TspDTI	ATGAA	2 cut(s)	157, 327
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	2 cut(s)	61, 277
XceI	RCATGY	1 cut(s)	76
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.