Rroxscaffold_3G00234440

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
20829040 .. 20838163
9124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00234440.1

Sequence Viewer

Length: 1185 bp
ATGGGAAGATTTGCTTCTATAAGAGTTTTTAGATTTGGAACCATTGGTACTAAAGATGGTAAACCAGTGAATAAATTGAATAAGAAGCATACTTATGTTGCAAAACCATTTTCTGGCAATCTACATTGTCAAAAGAAGATTCAACAAGAAGAGAATTACATTATCAAAGCTAAACTTACTGATGAGCATGTTCAAAAGTCCAATTCATTGTTCCCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGCTTAAAACGGCACCGTTGTCTAAAGACAGCGCCTCAATCGCTGCGCAGCTGCGCTTGGCATCTGCCGAGCTATCACACAACAGTTATAACACATACCTGTTGTCCTCTACTTTAAAATCCTGGATCCGTCCTTGCACCAAAAGACAGACTTTCACCCGAGTCAAGCCTCGGGCCGAGCACTACCTTGAAGTACTCCCACGCGTTGCAGAAACATATCTTCTCAAGGAGGCTCGACGCTTAAGGACTGATACATGTCAGTCCTACATCGAAGACAAGCCTGAGCAATCAGACAGCAACACACCCAGAGCAATGGAGATAAAGGAAAATGGAGAAGAAGAGAAGCAGATTGTGAATCCTTGGAAGGTGGAGGCCAGAGAAGGCGGCAAAATTGACTACGATAAGCTCATAGATCAGTTCGGTTGCCAGAGGATCGATCAGTCTCTTGTCGACCATGTCCCTCTTGTTACACAACTTACTGACGATGAGAAATGTATGTGGAAAAATCCCACAGTTGAAGAAAGCCAGAGCCTTGCAAGGGAAAATGCTAAAGACATCATTGCTTGTGGTTTTGACGTAACAAGAACCTTGATCTTCTCTGATTTTGATTATGTTGGTGGTGCCTTCTACAAGAACATGGATAAGGTCGGAGAGTGTGTCACCTATAATAAGGTTGTTGGCATATTTGGTTTCACCAGAGAAGATCATATAGGAAAAGTTAGTTTTCCTTTTGTACAAGCGGTACCATCATTTCCAAGTTCATTTCCACATTTCTTCTCTGGCCAAGATAATCTTCGTCGTTTAATACCCTGTGCGAAATTGGCTTATTACCTTAAGAAACAGAGGAAGGGGCATTTGGTGGAGGTGATACTTCCAAAGTATTCAAGCCTGGACCTAGATGAAATTCAAGGCCTACAAGAGATGGAGGCAGAATGA

Protein Analysis

394

Amino Acids

45.09

Weight (kDa)

8.44

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 339
Acc16I TGCGCA 1 cut(s) 297
Acc65I GGTACC 1 cut(s) 991
AccB1I GGYRCC 3 cut(s) 262, 869, 991
AccB7I CCANNNNNTGG 1 cut(s) 113
AccI GTMKAC 1 cut(s) 699
AccII CGCG 1 cut(s) 453
AciI CCGC 2 cut(s) 633, 989
AclWI GGATC 3 cut(s) 370, 383, 689
AcoI YGGCCR 1 cut(s) 1030
AcsI RAATTY 1 cut(s) 1152
AfaI GTAC 4 cut(s) 49, 444, 984, 993
AfiI CCNNNNNNNGG 3 cut(s) 113, 244, 787
AflII CTTAAG 2 cut(s) 490, 1082
AflIII ACRYGT 2 cut(s) 451, 503
AgsI TTSAA 8 cut(s) 79, 143, 194, 227, 440, 767, 1134, 1157
AjnI CCWGG 2 cut(s) 371, 1137
AjuI GAANNNNNNNTTGG 6 cut(s) 194, 226, 1026, 1058, 1088, 1120
AluBI AGCT 6 cut(s) 170, 223, 253, 301, 322, 655
AluI AGCT 6 cut(s) 170, 223, 253, 301, 322, 655
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 1 cut(s) 696
AlwI GGATC 3 cut(s) 370, 383, 689
Ama87I CYCGRG 2 cut(s) 408, 420
AoxI GGCC 4 cut(s) 423, 621, 1030, 1159
ApeKI GCWGC 3 cut(s) 293, 298, 301
ApoI RAATTY 1 cut(s) 1152
Asp718I GGTACC 1 cut(s) 991
AspLEI GCGC 3 cut(s) 284, 298, 306
AspS9I GGNCC 2 cut(s) 423, 1141
AsuHPI GGTGA 4 cut(s) 397, 901, 934, 1126
AvaI CYCGRG 2 cut(s) 408, 420
AvaII GGWCC 1 cut(s) 1141
BalI TGGCCA 1 cut(s) 1032
BamHI GGATCC 1 cut(s) 375
BanI GGYRCC 3 cut(s) 262, 869, 991
BbsI GAAGAC 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 432
BbvI GCAGC 3 cut(s) 280, 288, 310
BccI CCATC 3 cut(s) 50, 1003, 1165
BceAI ACGGC 1 cut(s) 276
BciT130I CCWGG 2 cut(s) 373, 1139
BcoDI GTCTC 1 cut(s) 696
BfaI CTAG 1 cut(s) 1145
BfoI RGCGCY 1 cut(s) 285
BfrI CTTAAG 2 cut(s) 490, 1082
BisI GCNGC 4 cut(s) 294, 299, 302, 634
BlsI GCNGC 4 cut(s) 295, 300, 303, 635
BmcAI AGTACT 1 cut(s) 444
Bme1390I CCNGG 2 cut(s) 373, 1139
Bme18I GGWCC 1 cut(s) 1141
BmeT110I CYCGRG 2 cut(s) 408, 420
BmgT120I GGNCC 2 cut(s) 423, 1141
BmiI GGNNCC 5 cut(s) 40, 264, 377, 871, 993
BmrFI CCNGG 2 cut(s) 373, 1139
BmsI GCATC 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 528
Bpu10I CCTNAGC 2 cut(s) 243, 531
BpuEI CTTGAG 1 cut(s) 458
Bsa29I ATCGAT 1 cut(s) 684
BsaJI CCNNGG 2 cut(s) 419, 608
BsaXI ACNNNNNCTCC 2 cut(s) 891, 921
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 244, 787
Bse1I ACTGG 1 cut(s) 65
Bse3DI GCAATG 2 cut(s) 567, 807
BseBI CCWGG 2 cut(s) 373, 1139
BseCI ATCGAT 1 cut(s) 684
BseDI CCNNGG 2 cut(s) 419, 608
BseLI CCNNNNNNNGG 3 cut(s) 113, 244, 787
BseMI GCAATG 2 cut(s) 567, 807
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 1 cut(s) 65
BseXI GCAGC 3 cut(s) 280, 288, 310
Bsh1236I CGCG 1 cut(s) 453
BshFI GGCC 4 cut(s) 425, 623, 1032, 1161
BshNI GGYRCC 3 cut(s) 262, 869, 991
BshVI ATCGAT 1 cut(s) 684
BsiHKAI GWGCWC 1 cut(s) 432
BsiHKCI CYCGRG 2 cut(s) 408, 420
BslFI GGGAC 1 cut(s) 692
BslI CCNNNNNNNGG 3 cut(s) 113, 244, 787
BsmAI GTCTC 1 cut(s) 696
BsmFI GGGAC 1 cut(s) 692
BsnI GGCC 4 cut(s) 425, 623, 1032, 1161
BsoBI CYCGRG 2 cut(s) 408, 420
Bsp1286I GDGCHC 1 cut(s) 432
Bsp1407I TGTACA 1 cut(s) 982
Bsp143I GATC 6 cut(s) 375, 661, 681, 685, 840, 952
BspACI CCGC 2 cut(s) 633, 989
BspANI GGCC 4 cut(s) 425, 623, 1032, 1161
BspCNI CTCAG 1 cut(s) 523
BspDI ATCGAT 1 cut(s) 684
BspFNI CGCG 1 cut(s) 453
BspLI GGNNCC 5 cut(s) 40, 264, 377, 871, 993
BspPI GGATC 3 cut(s) 370, 383, 689
BspT107I GGYRCC 3 cut(s) 262, 869, 991
BspTI CTTAAG 2 cut(s) 490, 1082
BsrDI GCAATG 2 cut(s) 567, 807
BsrGI TGTACA 1 cut(s) 982
BsrI ACTGG 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 419, 608
BssMI GATC 6 cut(s) 375, 661, 681, 685, 840, 952
BssT1I CCWWGG 1 cut(s) 608
Bst2UI CCWGG 2 cut(s) 373, 1139
Bst4CI ACNGT 3 cut(s) 267, 335, 763
Bst6I CTCTTC 2 cut(s) 144, 582
BstAFI CTTAAG 2 cut(s) 490, 1082
BstAUI TGTACA 1 cut(s) 982
BstDEI CTNAG 2 cut(s) 243, 531
BstFNI CGCG 1 cut(s) 453
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 3 cut(s) 284, 298, 306
BstKTI GATC 6 cut(s) 378, 664, 684, 688, 843, 955
BstMAI GTCTC 1 cut(s) 696
BstMBI GATC 6 cut(s) 375, 661, 681, 685, 840, 952
BstMWI GCNNNNNNNGC 2 cut(s) 290, 1070
BstNI CCWGG 2 cut(s) 373, 1139
BstNSI RCATGY 2 cut(s) 191, 507
BstSCI CCNGG 2 cut(s) 371, 1137
BstUI CGCG 1 cut(s) 453
BstV1I GCAGC 3 cut(s) 280, 288, 310
BstV2I GAAGAC 1 cut(s) 528
BstX2I RGATCY 1 cut(s) 375
BstXI CCANNNNNNTGG 1 cut(s) 562
BstYI RGATCY 1 cut(s) 375
Bsu15I ATCGAT 1 cut(s) 684
BsuRI GGCC 4 cut(s) 425, 623, 1032, 1161
BsuTUI ATCGAT 1 cut(s) 684
BtsIMutI CAGTG 1 cut(s) 72
CfoI GCGC 3 cut(s) 284, 298, 306
Cfr13I GGNCC 2 cut(s) 423, 1141
ClaI ATCGAT 1 cut(s) 684
CseI GACGC 1 cut(s) 495
Csp6I GTAC 4 cut(s) 48, 443, 983, 992
CviAII CATG 5 cut(s) 188, 239, 504, 704, 886
CviQI GTAC 4 cut(s) 48, 443, 983, 992
DdeI CTNAG 2 cut(s) 243, 531
DpnI GATC 6 cut(s) 377, 663, 683, 687, 842, 954
DpnII GATC 6 cut(s) 375, 661, 681, 685, 840, 952
DraI TTTAAA 1 cut(s) 366
EaeI YGGCCR 1 cut(s) 1030
Eam1104I CTCTTC 2 cut(s) 144, 582
EarI CTCTTC 2 cut(s) 144, 582
Eco130I CCWWGG 1 cut(s) 608
Eco147I AGGCCT 1 cut(s) 1161
Eco47I GGWCC 1 cut(s) 1141
Eco88I CYCGRG 2 cut(s) 408, 420
EcoRII CCWGG 2 cut(s) 371, 1137
EcoT14I CCWWGG 1 cut(s) 608
ErhI CCWWGG 1 cut(s) 608
FaeI CATG 5 cut(s) 191, 242, 507, 707, 889
FalI AAGNNNNNCTT 7 cut(s) 30, 159, 191, 385, 417, 1026, 1058
FaqI GGGAC 1 cut(s) 692
FatI CATG 5 cut(s) 187, 238, 503, 703, 885
FblI GTMKAC 1 cut(s) 699
Fnu4HI GCNGC 4 cut(s) 294, 299, 302, 634
Fsp4HI GCNGC 4 cut(s) 294, 299, 302, 634
FspBI CTAG 1 cut(s) 1145
FspI TGCGCA 1 cut(s) 297
GlaI GCGC 3 cut(s) 283, 297, 305
GluI GCNGC 4 cut(s) 294, 299, 302, 634
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 4 cut(s) 425, 623, 1032, 1161
HgaI GACGC 1 cut(s) 495
HhaI GCGC 3 cut(s) 284, 298, 306
Hin1II CATG 5 cut(s) 191, 242, 507, 707, 889
Hin6I GCGC 3 cut(s) 282, 296, 304
HinP1I GCGC 3 cut(s) 282, 296, 304
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HinfI GANTC 3 cut(s) 139, 411, 604
HphI GGTGA 4 cut(s) 397, 901, 934, 1126
Hpy166II GTNNAC 2 cut(s) 62, 700
Hpy188I TCNGA 3 cut(s) 541, 850, 899
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 2 cut(s) 62, 700
Hpy99I CGWCG 2 cut(s) 489, 1050
HpyAV CCTTC 4 cut(s) 607, 623, 883, 1090
HpyCH4III ACNGT 3 cut(s) 267, 335, 763
HpyCH4IV ACGT 1 cut(s) 825
HpyCH4V TGCA 4 cut(s) 101, 387, 458, 785
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 1070
HpyF3I CTNAG 2 cut(s) 243, 531
HpySE526I ACGT 1 cut(s) 825
Hsp92II CATG 5 cut(s) 191, 242, 507, 707, 889
HspAI GCGC 3 cut(s) 282, 296, 304
KpnI GGTACC 1 cut(s) 995
Kzo9I GATC 6 cut(s) 375, 661, 681, 685, 840, 952
Lsp1109I GCAGC 3 cut(s) 280, 288, 310
LweI GCATC 1 cut(s) 320
MaeI CTAG 1 cut(s) 1145
MaeII ACGT 1 cut(s) 825
MaeIII GTNAC 3 cut(s) 715, 826, 907
MalI GATC 6 cut(s) 377, 663, 683, 687, 842, 954
MboI GATC 6 cut(s) 375, 661, 681, 685, 840, 952
MflI RGATCY 1 cut(s) 375
MhlI GDGCHC 1 cut(s) 432
MlsI TGGCCA 1 cut(s) 1032
MluCI AATT 6 cut(s) 74, 154, 202, 639, 1067, 1152
MluI ACGCGT 1 cut(s) 451
MluNI TGGCCA 1 cut(s) 1032
MlyI GAGTC 1 cut(s) 420
MmeI TCCRAC 1 cut(s) 877
Mox20I TGGCCA 1 cut(s) 1032
MscI TGGCCA 1 cut(s) 1032
MseI TTAA 5 cut(s) 255, 365, 491, 1052, 1083
MslI CAYNNNNRTG 1 cut(s) 93
Msp20I TGGCCA 1 cut(s) 1032
MspA1I CMGCKG 1 cut(s) 301
MspCI CTTAAG 2 cut(s) 490, 1082
MspR9I CCNGG 2 cut(s) 373, 1139
MvaI CCWGG 2 cut(s) 373, 1139
MvnI CGCG 1 cut(s) 453
MwoI GCNNNNNNNGC 2 cut(s) 290, 1070
NdeII GATC 6 cut(s) 375, 661, 681, 685, 840, 952
NlaIII CATG 5 cut(s) 191, 242, 507, 707, 889
NlaIV GGNNCC 5 cut(s) 40, 264, 377, 871, 993
NmeAIII GCCGAG 2 cut(s) 343, 451
NmuCI GTSAC 1 cut(s) 907
NsbI TGCGCA 1 cut(s) 297
NspI RCATGY 2 cut(s) 191, 507
PceI AGGCCT 1 cut(s) 1161
PciI ACATGT 1 cut(s) 503
PfeI GAWTC 2 cut(s) 139, 604
PflFI GACNNNGTC 1 cut(s) 704
PflMI CCANNNNNTGG 1 cut(s) 113
PfoI TCCNGGA 1 cut(s) 371
PkrI GCNGC 4 cut(s) 295, 300, 303, 635
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
PscI ACATGT 1 cut(s) 503
PsiI TTATAA 1 cut(s) 339
Psp6I CCWGG 2 cut(s) 371, 1137
PspGI CCWGG 2 cut(s) 371, 1137
PspN4I GGNNCC 5 cut(s) 40, 264, 377, 871, 993
PspPI GGNCC 2 cut(s) 423, 1141
PsrI GAACNNNNNNTAC 2 cut(s) 31, 63
PsuI RGATCY 1 cut(s) 375
PsyI GACNNNGTC 1 cut(s) 704
PvuII CAGCTG 1 cut(s) 301
RsaI GTAC 4 cut(s) 49, 444, 984, 993
RsaNI GTAC 4 cut(s) 48, 443, 983, 992
RseI CAYNNNNRTG 1 cut(s) 93
SalI GTCGAC 1 cut(s) 698
SaqAI TTAA 5 cut(s) 255, 365, 491, 1052, 1083
SatI GCNGC 4 cut(s) 294, 299, 302, 634
Sau3AI GATC 6 cut(s) 375, 661, 681, 685, 840, 952
Sau96I GGNCC 2 cut(s) 423, 1141
ScaI AGTACT 1 cut(s) 444
SchI GAGTC 1 cut(s) 420
ScrFI CCNGG 2 cut(s) 373, 1139
SduI GDGCHC 1 cut(s) 432
SfaNI GCATC 1 cut(s) 320
SinI GGWCC 1 cut(s) 1141
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 3 cut(s) 473, 490, 1082
SmoI CTYRAG 3 cut(s) 473, 490, 1082
Sse9I AATT 6 cut(s) 74, 154, 202, 639, 1067, 1152
SseBI AGGCCT 1 cut(s) 1161
SsiI CCGC 2 cut(s) 633, 989
SspMI CTAG 1 cut(s) 1145
StuI AGGCCT 1 cut(s) 1161
StyD4I CCNGG 2 cut(s) 371, 1137
StyI CCWWGG 1 cut(s) 608
TaaI ACNGT 3 cut(s) 267, 335, 763
TaiI ACGT 1 cut(s) 828
TaqI TCGA 4 cut(s) 484, 519, 684, 699
TasI AATT 6 cut(s) 74, 154, 202, 639, 1067, 1152
TatI WGTACW 2 cut(s) 442, 982
TauI GCSGC 1 cut(s) 636
TfiI GAWTC 2 cut(s) 139, 604
Tru1I TTAA 5 cut(s) 255, 365, 491, 1052, 1083
Tru9I TTAA 5 cut(s) 255, 365, 491, 1052, 1083
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 1 cut(s) 907
TseI GCWGC 3 cut(s) 293, 298, 301
Tsp45I GTSAC 1 cut(s) 907
TspDTI ATGAA 3 cut(s) 195, 999, 1164
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 1 cut(s) 72
Tth111I GACNNNGTC 1 cut(s) 704
Van91I CCANNNNNTGG 1 cut(s) 113
Vha464I CTTAAG 2 cut(s) 490, 1082
VpaK11BI GGWCC 1 cut(s) 1141
XapI RAATTY 1 cut(s) 1152
XceI RCATGY 2 cut(s) 191, 507
XmiI GTMKAC 1 cut(s) 699
XspI CTAG 1 cut(s) 1145
ZrmI AGTACT 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.