Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001148

Physical Location & Seq

Genomic Coordinates Forward (+)

31896340 .. 31897571

Gene Structure 1232 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002302

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTTGAAGCTGCTCTCGCTCTCTAACTCGATTGTCGTTCTAGGTTTAGTTTTCCTATTCTATCTCACGGAAAGTTTGCATAAAGAAAACACACCAACGGACAATAGAGAGGTAGAAAATGATAATGGAGAAGCAAAGCAACCAATAGTGACTCCATGGAAGGTAGAGGCCAAAGATGGTGGCATAATCGATTATGATAAGCTTATTAATCAATTCGGTTGTCAGAGGCTCGATCAATCTTTTTACGACCAAGTCTACCATCTCACCTTGCGTGCGCCACACGTCTTCCTCCGCCGCAAGGTCTTCTTCGCCCACCTAGACTTCAGTGAGATTCTTGATGCTTATGAGAAAGGAGAGAAGTTCTATCTGTACACAGGAAAAGGGCCTTCTTCTGAGTCTTTACATTTGGGGCATCTCATCCCTTTCATGTTCACTAAATATTTGCAAGATGCCTTCAAGGTTCCTCTCGTTATACAACTCACTGATGACGAGAAGTGCATGTGGAAAAATCTCACCGTGGAAGAAAGCCAGAGACTTGCTAGGGAGAATGCTAAAGACATTATTGCTTGTGGCTTTGACATAACAAAAACCTTCATCTTCTCTAATTTTGACTATGTTGGTGTTGCCTTCTACAAAAACATGGTGAAGGTGGGAAAGTGTGTGACCTACAATAAGGTTGCTGGCATATTTGGTTTCACCGGTGAAGATCATATAGGAAAAGTTAGTTTTCCACCAATACAGGCAGTTCCGTCGTTTCCTAGTTCATTTCCACATCTCTACTCCGGTCAAGACAACCTTCGTTGCTTAGTACACTGTGCGATTGACCAAGACCCTTATTTTAGAATGACACGAGATGTTGCTCCACGCATTAATTGGATATCGGAAACCTGCTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004830 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006436 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

300

Amino Acids

34.33

Weight (kDa)

6.0

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1b	PF00579	118 - 291	1.8e-08	tRNA synthetases class I (W and Y)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04600 AT3G04600 AT3G04600
fragaria_vesca	FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_5g27321
malus_domestica	MD04G1236500.v1.1 MD12G1255800.v1.1
prunus_persica	Prupe.7G057000_v2.0.a1 Prupe.7G057800_v2.0.a1
pyrus_communis	pycom04g21040 pycom12g23440
rosa_chinensis	RchiOBHm_Chr3g0493481 RchiOBHm_Chr7g0219201 RchiOBHm_Chr7g0219221 RchiOBHm_Chr7g0223011
rosa_laevigata	RLG00000002003 RLG00000002302 RLG00000002303 RLG00000022713
rosa_multiflora	Rmu_sc0000868.1_g000014 Rmu_sc0006373.1_g000002 Rmu_sc0006514.1_g000024 Rmu_sc0007422.1_g000005 Rmu_sc0009785.1_g000024 Rmu_sc0039697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234440 Rroxscaffold_3G00236350 Rroxscaffold_3G00237890 Rroxscaffold_3G00237970 Rroxscaffold_3G00238030 Rroxscaffold_3G00238960 Rroxscaffold_3G00238970 Rroxscaffold_5G00377610 Rroxscaffold_6G00391570 Rroxscaffold_7G00199590 Rroxscaffold_7G00199600
rosa_rugosa	Rorug07G0177500 Rorug07G0177500 Rorug07G0212800
rosa_samantha	Rh3AG310200 Rh3BG346300 Rh3CG344200 Rh3DG345400 Rh7AG319000 Rh7AG326700 Rh7AG357900 Rh7BG310900 Rh7BG346100 Rh7CG376000 Rh7DG318100 Rh7DG318200 Rh7DG352800
rosa_wichuraiana	Rw3G027260 Rw7G027160 Rw7G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	896
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	2 cut(s)	292, 295
AcuI	CTGAAG	1 cut(s)	307
AfaI	GTAC	2 cut(s)	371, 810
AfiI	CCNNNNNNNGG	1 cut(s)	298
AflIII	ACRYGT	1 cut(s)	280
AgeI	ACCGGT	1 cut(s)	698
AgsI	TTSAA	2 cut(s)	7, 457
AjiI	CACGTC	1 cut(s)	283
AluBI	AGCT	2 cut(s)	10, 202
AluI	AGCT	2 cut(s)	10, 202
Alw26I	GTCTC	1 cut(s)	526
AoxI	GGCC	2 cut(s)	168, 383
ApeKI	GCWGC	1 cut(s)	10
AseI	ATTAAT	2 cut(s)	207, 870
AsiGI	ACCGGT	1 cut(s)	698
AspLEI	GCGC	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	383
AsuHPI	GGTGA	5 cut(s)	256, 505, 655, 688, 713
BauI	CACGAG	1 cut(s)	849
BbsI	GAAGAC	2 cut(s)	277, 295
BccI	CCATC	2 cut(s)	170, 267
BcgI	CGANNNNNNTGC	2 cut(s)	732, 766
BcoDI	GTCTC	1 cut(s)	526
BfaI	CTAG	4 cut(s)	41, 317, 540, 759
BfuAI	ACCTGC	1 cut(s)	896
BisI	GCNGC	2 cut(s)	11, 295
BlsI	GCNGC	2 cut(s)	12, 296
BmgBI	CACGTC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	1 cut(s)	462
BmsI	GCATC	3 cut(s)	328, 421, 439
BpiI	GAAGAC	2 cut(s)	277, 295
Bsa29I	ATCGAT	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	155, 516
BsaWI	WCCGGW	2 cut(s)	698, 782
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse118I	RCCGGY	1 cut(s)	698
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	155, 516
BseGI	GGATG	1 cut(s)	417
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	170, 385
BshTI	ACCGGT	1 cut(s)	698
BshVI	ATCGAT	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	699, 783
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	526
BsmI	GAATGC	1 cut(s)	553
BsnI	GGCC	2 cut(s)	170, 385
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	232, 706
Bsp19I	CCATGG	1 cut(s)	155
BspACI	CCGC	2 cut(s)	292, 295
BspANI	GGCC	2 cut(s)	170, 385
BspCNI	CTCAG	1 cut(s)	385
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	462
BspMI	ACCTGC	1 cut(s)	896
BsrFI	RCCGGY	1 cut(s)	698
BsrGI	TGTACA	1 cut(s)	369
BssAI	RCCGGY	1 cut(s)	698
BssECI	CCNNGG	2 cut(s)	155, 516
BssMI	GATC	2 cut(s)	232, 706
BssSI	CACGAG	1 cut(s)	849
BssT1I	CCWWGG	1 cut(s)	155
Bst2BI	CACGAG	1 cut(s)	849
Bst4CI	ACNGT	2 cut(s)	517, 815
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	2 cut(s)	273, 682
BstDEI	CTNAG	2 cut(s)	393, 805
BstDSI	CCRYGG	2 cut(s)	155, 516
BstF5I	GGATG	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	2 cut(s)	235, 709
BstMAI	GTCTC	1 cut(s)	526
BstMBI	GATC	2 cut(s)	232, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	502
BstV2I	GAAGAC	2 cut(s)	277, 295
Bsu15I	ATCGAT	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	170, 385
BsuTUI	ATCGAT	1 cut(s)	189
BtgI	CCRYGG	2 cut(s)	155, 516
BtrI	CACGTC	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	417
BtsIMutI	CAGTG	3 cut(s)	331, 480, 811
BveI	ACCTGC	1 cut(s)	896
Cac8I	GCNNGC	2 cut(s)	273, 682
CfoI	GCGC	1 cut(s)	277
Cfr10I	RCCGGY	1 cut(s)	698
Cfr13I	GGNCC	1 cut(s)	383
ClaI	ATCGAT	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	370, 809
CspAI	ACCGGT	1 cut(s)	698
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviAII	CATG	4 cut(s)	156, 427, 499, 640
CviJI	RGCY	7 cut(s)	10, 170, 202, 229, 385, 528, 573
CviKI_1	RGCY	7 cut(s)	10, 170, 202, 229, 385, 528, 573
CviQI	GTAC	2 cut(s)	370, 809
DdeI	CTNAG	2 cut(s)	393, 805
DpnI	GATC	2 cut(s)	234, 708
DpnII	GATC	2 cut(s)	232, 706
EciI	GGCGGA	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	155
Eco32I	GATATC	1 cut(s)	879
Eco57I	CTGAAG	1 cut(s)	307
EcoO109I	RGGNCCY	1 cut(s)	383
EcoRV	GATATC	1 cut(s)	879
EcoT14I	CCWWGG	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	4 cut(s)	159, 430, 502, 643
FalI	AAGNNNNNCTT	4 cut(s)	290, 322, 780, 812
FatI	CATG	4 cut(s)	155, 426, 498, 639
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	11, 295
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	2 cut(s)	11, 295
FspBI	CTAG	4 cut(s)	41, 317, 540, 759
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	2 cut(s)	11, 295
HaeIII	GGCC	2 cut(s)	170, 385
HapII	CCGG	2 cut(s)	699, 783
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	4 cut(s)	159, 430, 502, 643
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	3 cut(s)	151, 331, 395
HpaII	CCGG	2 cut(s)	699, 783
HphI	GGTGA	5 cut(s)	256, 505, 655, 688, 713
Hpy166II	GTNNAC	4 cut(s)	256, 372, 432, 811
Hpy188I	TCNGA	3 cut(s)	225, 394, 883
Hpy188III	TCNNGA	2 cut(s)	335, 788
Hpy8I	GTNNAC	4 cut(s)	256, 372, 432, 811
Hpy99I	CGWCG	1 cut(s)	754
HpyAV	CCTTC	7 cut(s)	154, 396, 463, 601, 637, 640, 806
HpyCH4III	ACNGT	2 cut(s)	517, 815
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	3 cut(s)	79, 445, 498
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	2 cut(s)	393, 805
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	4 cut(s)	159, 430, 502, 643
HspAI	GCGC	1 cut(s)	275
Kzo9I	GATC	2 cut(s)	232, 706
LmnI	GCTCC	1 cut(s)	865
LpnPI	CCDG	6 cut(s)	360, 542, 666, 712, 725, 796
LweI	GCATC	3 cut(s)	328, 421, 439
MaeI	CTAG	4 cut(s)	41, 317, 540, 759
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	2 cut(s)	148, 661
MalI	GATC	2 cut(s)	234, 708
MboI	GATC	2 cut(s)	232, 706
MboII	GAAGA	7 cut(s)	277, 295, 298, 381, 533, 589, 716
MluCI	AATT	3 cut(s)	212, 604, 871
MlyI	GAGTC	2 cut(s)	145, 404
MnlI	CCTC	5 cut(s)	103, 160, 219, 299, 474
MseI	TTAA	2 cut(s)	207, 870
MspI	CCGG	2 cut(s)	699, 783
Mva1269I	GAATGC	1 cut(s)	553
MwoI	GCNNNNNNNGC	1 cut(s)	16
NcoI	CCATGG	1 cut(s)	155
NdeII	GATC	2 cut(s)	232, 706
NlaIII	CATG	4 cut(s)	159, 430, 502, 643
NlaIV	GGNNCC	1 cut(s)	462
NmuCI	GTSAC	2 cut(s)	148, 661
NspI	RCATGY	1 cut(s)	502
PctI	GAATGC	1 cut(s)	553
PfeI	GAWTC	1 cut(s)	331
PflFI	GACNNNGTC	1 cut(s)	251
PinAI	ACCGGT	1 cut(s)	698
PkrI	GCNGC	2 cut(s)	12, 296
PleI	GAGTC	2 cut(s)	145, 403
PpsI	GAGTC	2 cut(s)	145, 403
PshBI	ATTAAT	2 cut(s)	207, 870
PspN4I	GGNNCC	1 cut(s)	462
PspPI	GGNCC	1 cut(s)	383
PsyI	GACNNNGTC	1 cut(s)	251
RsaI	GTAC	2 cut(s)	371, 810
RsaNI	GTAC	2 cut(s)	370, 809
SaqAI	TTAA	2 cut(s)	207, 870
SatI	GCNGC	2 cut(s)	11, 295
Sau3AI	GATC	2 cut(s)	232, 706
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	2 cut(s)	145, 404
SfaNI	GCATC	3 cut(s)	328, 421, 439
SgrAI	CRCCGGYG	1 cut(s)	698
Sse9I	AATT	3 cut(s)	212, 604, 871
SsiI	CCGC	2 cut(s)	292, 295
SspI	AATATT	1 cut(s)	440
SspMI	CTAG	4 cut(s)	41, 317, 540, 759
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	2 cut(s)	517, 815
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	3 cut(s)	29, 189, 231
TasI	AATT	3 cut(s)	212, 604, 871
TatI	WGTACW	2 cut(s)	369, 808
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	2 cut(s)	207, 870
Tru9I	TTAA	2 cut(s)	207, 870
TscAI	CASTG	3 cut(s)	331, 487, 818
TseFI	GTSAC	2 cut(s)	148, 661
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	2 cut(s)	148, 661
TspDTI	ATGAA	3 cut(s)	415, 583, 753
TspGWI	ACGGA	3 cut(s)	83, 113, 738
TspRI	CASTG	3 cut(s)	331, 487, 818
Tth111I	GACNNNGTC	1 cut(s)	251
VspI	ATTAAT	2 cut(s)	207, 870
XceI	RCATGY	1 cut(s)	502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	870
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	4 cut(s)	41, 317, 540, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.