FvH4_4g11950

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
15657769 .. 15664484
6716 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11950.t3

Sequence Viewer

Length: 1197 bp
ATGGAGACAAAGCAAAACGGAGAAGAAGAGCAGCAGATTGTGAATCCATGGAAGGTGGAGGCCAAAGAAGGCGGCAAAATCGACTACGACAAGCTCATAGACCAGTTCGGTTGCCAGCGTATCGATCAATCTCTCGTCGACCGCGTCCGCCGTCTCACCTCCCGCCCTCCCCACGTCTTCCTCCGCCGCGACGTCTTCTTCGCCCACCGGGACTTGAATGAGATTCTGGACGCGTATGAGAGAGGAGACAAGTTTTATCTCTACACTGGAAGAGGACCTTCCTCTGAGGCTTTGCATTTGGGGCATCTCATCCCCTTCATGTTCACTAAATATTTGCAGGATGCCTTCAAGGTCCCGCTGGTTATACAACTTACAGATGATGAGAAATGTATGTGGAAGAATATTAGTGTGGAGGAAAGCCAGAGGCTTGCGAGGGAAAATGCCAAAGACATCATTGCCTGTGGTTTTGATGTGACACGAACCTTTATATTTTCCGATTTCGATTATGTCGGTGGTGCTTTCTACAAGAACATGGTAAAGGTTGGGAAGTGCGTCACTTATAATAAGGTGGTTGGCATATTTGGTTTTACTGGCGAAGATCACATTGGAAAAGTTAGTTTTCCACCGGTACAGGCAGTACCATCATTTCCAAGTTCTTTTCCACATCTGTTCTCTGGTCAAGATAATCTTCGGTGCTTAATACCCTGTGCGATTGACCAGGATCCTTATTTTAGGATGACCCGGGATGTCGCTCCACGCATCGGATATCACAAGCCTGCTTTAATAGAATCTTTATTCTTCCCTGCCCTCCAGGGAGAAACAGGGAAAATGTCGGCTAGTGATCCGAATTCCGCCATCTATGTAACTGATTCCGCAAAGGATATTAAGAGCAAGATAAAAAAGTTTGCTTTTTCTGGGGGGCAAGATACAATAGAGAAACACAGAGAGTTGGGAGCAGATCTCGAGGTAGACATACCATATAAATATCTGAAATTTTTTCTGGATGATGACATTGAGCTCGCTCATATAGGAAAGGAGTATGGTGCAGGTCGAATGTTGACAGGGGAAGTGAAGCAGAGGCTCATTCAAGTTTTGACAGAAATTGTGGAGAGACATCGTAGGGCTAGAGCTGCTGTCACTGATGAGATGGTGGACGCGTTCATGGCAGTGAGGCCTCTCCCAAATATGTTCAACTAA

Protein Analysis

399

Amino Acids

45.41

Weight (kDa)

6.24

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1b PF00579 19 - 304 1.5e-20 tRNA synthetases class I (W and Y)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 561
AatII GACGTC 1 cut(s) 195
Acc36I ACCTGC 1 cut(s) 1037
AccI GTMKAC 2 cut(s) 138, 969
AccII CGCG 4 cut(s) 144, 189, 233, 1157
AciI CCGC 9 cut(s) 72, 142, 148, 163, 184, 187, 356, 852, 873
AclWI GGATC 3 cut(s) 716, 729, 836
AcsI RAATTY 2 cut(s) 847, 992
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 2 cut(s) 630, 639
AfiI CCNNNNNNNGG 1 cut(s) 761
AflIII ACRYGT 2 cut(s) 231, 1155
AgeI ACCGGT 1 cut(s) 625
AgsI TTSAA 4 cut(s) 217, 349, 1088, 1192
AjiI CACGTC 1 cut(s) 175
AjnI CCWGG 2 cut(s) 717, 810
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
AluBI AGCT 3 cut(s) 94, 1018, 1130
AluI AGCT 3 cut(s) 94, 1018, 1130
Alw21I GWGCWC 1 cut(s) 1020
Alw26I GTCTC 3 cut(s) 158, 240, 1105
AlwI GGATC 3 cut(s) 716, 729, 836
Ama87I CYCGRG 2 cut(s) 741, 962
AoxI GGCC 2 cut(s) 60, 1172
ApeKI GCWGC 2 cut(s) 31, 1130
ApoI RAATTY 2 cut(s) 847, 992
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AsiGI ACCGGT 1 cut(s) 625
AspS9I GGNCC 2 cut(s) 275, 352
AsuC2I CCSGG 3 cut(s) 209, 742, 743
AsuHPI GGTGA 1 cut(s) 148
AvaI CYCGRG 2 cut(s) 741, 962
AvaII GGWCC 2 cut(s) 275, 352
BamHI GGATCC 1 cut(s) 721
BanII GRGCYC 1 cut(s) 1020
BbsI GAAGAC 2 cut(s) 169, 187
Bbv12I GWGCWC 1 cut(s) 1020
BbvI GCAGC 2 cut(s) 43, 1117
BccI CCATC 3 cut(s) 649, 863, 1141
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 2 cut(s) 719, 812
BcnI CCSGG 3 cut(s) 209, 742, 743
BcoDI GTCTC 3 cut(s) 158, 240, 1105
BfaI CTAG 2 cut(s) 837, 1125
BfuAI ACCTGC 1 cut(s) 1037
BglII AGATCT 1 cut(s) 958
BisI GCNGC 4 cut(s) 32, 73, 187, 1131
BlsI GCNGC 4 cut(s) 33, 74, 188, 1132
Bme1390I CCNGG 5 cut(s) 209, 719, 742, 743, 812
Bme18I GGWCC 2 cut(s) 275, 352
BmeT110I CYCGRG 2 cut(s) 741, 962
BmgBI CACGTC 1 cut(s) 175
BmgT120I GGNCC 2 cut(s) 275, 352
BmiI GGNNCC 2 cut(s) 354, 723
BmrFI CCNGG 5 cut(s) 209, 719, 742, 743, 812
BmsI GCATC 3 cut(s) 313, 331, 768
BpiI GAAGAC 2 cut(s) 169, 187
BplI GAGNNNNNCTC 2 cut(s) 945, 977
BpmI CTGGAG 1 cut(s) 794
BpuMI CCSGG 3 cut(s) 209, 742, 743
Bsa29I ATCGAT 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 3 cut(s) 47, 741, 811
BsaWI WCCGGW 1 cut(s) 625
Bsc4I CCNNNNNNNGG 1 cut(s) 761
Bse118I RCCGGY 1 cut(s) 625
Bse1I ACTGG 3 cut(s) 103, 271, 595
Bse3DI GCAATG 1 cut(s) 453
BseBI CCWGG 2 cut(s) 719, 812
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 3 cut(s) 47, 741, 811
BseGI GGATG 5 cut(s) 309, 346, 741, 751, 1009
BseLI CCNNNNNNNGG 1 cut(s) 761
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 3 cut(s) 103, 271, 595
BseRI GAGGAG 1 cut(s) 258
BseXI GCAGC 2 cut(s) 43, 1117
BsgI GTGCAG 1 cut(s) 1065
Bsh1236I CGCG 4 cut(s) 144, 189, 233, 1157
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 2 cut(s) 62, 1174
BshTI ACCGGT 1 cut(s) 625
BshVI ATCGAT 1 cut(s) 123
BsiEI CGRYCG 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 1020
BsiHKCI CYCGRG 2 cut(s) 741, 962
BsiSI CCGG 3 cut(s) 208, 626, 742
BslFI GGGAC 2 cut(s) 224, 338
BslI CCNNNNNNNGG 1 cut(s) 761
BsmAI GTCTC 3 cut(s) 158, 240, 1105
BsmBI CGTCTC 1 cut(s) 158
BsmFI GGGAC 2 cut(s) 224, 338
BsnI GGCC 2 cut(s) 62, 1174
BsoBI CYCGRG 2 cut(s) 741, 962
Bsp1286I GDGCHC 1 cut(s) 1020
Bsp143I GATC 5 cut(s) 124, 598, 721, 841, 958
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 9 cut(s) 72, 142, 148, 163, 184, 187, 356, 852, 873
BspANI GGCC 2 cut(s) 62, 1174
BspCNI CTCAG 1 cut(s) 277
BspDI ATCGAT 1 cut(s) 123
BspFNI CGCG 4 cut(s) 144, 189, 233, 1157
BspLI GGNNCC 2 cut(s) 354, 723
BspMI ACCTGC 1 cut(s) 1037
BspPI GGATC 3 cut(s) 716, 729, 836
BspQI GCTCTTC 1 cut(s) 21
BsrDI GCAATG 1 cut(s) 453
BsrFI RCCGGY 1 cut(s) 625
BsrI ACTGG 3 cut(s) 103, 271, 595
BssAI RCCGGY 1 cut(s) 625
BssECI CCNNGG 3 cut(s) 47, 741, 811
BssMI GATC 5 cut(s) 124, 598, 721, 841, 958
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 719, 812
Bst6I CTCTTC 2 cut(s) 21, 265
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 4 cut(s) 116, 429, 777, 1020
BstDEI CTNAG 1 cut(s) 285
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 5 cut(s) 309, 346, 741, 751, 1009
BstFNI CGCG 4 cut(s) 144, 189, 233, 1157
BstKTI GATC 5 cut(s) 127, 601, 724, 844, 961
BstMAI GTCTC 3 cut(s) 158, 240, 1105
BstMBI GATC 5 cut(s) 124, 598, 721, 841, 958
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 3 cut(s) 301, 1130, 1163
BstNI CCWGG 2 cut(s) 719, 812
BstSCI CCNGG 5 cut(s) 207, 717, 740, 741, 810
BstUI CGCG 4 cut(s) 144, 189, 233, 1157
BstV1I GCAGC 2 cut(s) 43, 1117
BstV2I GAAGAC 2 cut(s) 169, 187
BstX2I RGATCY 2 cut(s) 721, 958
BstYI RGATCY 2 cut(s) 721, 958
Bsu15I ATCGAT 1 cut(s) 123
BsuRI GGCC 2 cut(s) 62, 1174
BsuTUI ATCGAT 1 cut(s) 123
BtgI CCRYGG 1 cut(s) 47
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 5 cut(s) 309, 346, 741, 751, 1009
BtsI GCAGTG 1 cut(s) 1173
BtsIMutI CAGTG 3 cut(s) 264, 1137, 1173
BveI ACCTGC 1 cut(s) 1037
Cac8I GCNNGC 4 cut(s) 116, 429, 777, 1020
Cfr10I RCCGGY 1 cut(s) 625
Cfr13I GGNCC 2 cut(s) 275, 352
Cfr9I CCCGGG 1 cut(s) 741
ClaI ATCGAT 1 cut(s) 123
CseI GACGC 4 cut(s) 133, 239, 541, 1163
Csp6I GTAC 2 cut(s) 629, 638
CspAI ACCGGT 1 cut(s) 625
CviAII CATG 4 cut(s) 48, 319, 532, 1162
CviQI GTAC 2 cut(s) 629, 638
DdeI CTNAG 1 cut(s) 285
DpnI GATC 5 cut(s) 126, 600, 723, 843, 960
DpnII GATC 5 cut(s) 124, 598, 721, 841, 958
Eam1104I CTCTTC 2 cut(s) 21, 265
EarI CTCTTC 2 cut(s) 21, 265
EciI GGCGGA 3 cut(s) 137, 173, 841
Ecl136II GAGCTC 1 cut(s) 1018
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 1174
Eco24I GRGCYC 1 cut(s) 1020
Eco32I GATATC 1 cut(s) 767
Eco47I GGWCC 2 cut(s) 275, 352
Eco53kI GAGCTC 1 cut(s) 1018
Eco88I CYCGRG 2 cut(s) 741, 962
EcoICRI GAGCTC 1 cut(s) 1018
EcoO109I RGGNCCY 2 cut(s) 275, 352
EcoRI GAATTC 1 cut(s) 847
EcoRII CCWGG 2 cut(s) 717, 810
EcoRV GATATC 1 cut(s) 767
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 1020
ErhI CCWWGG 1 cut(s) 47
Esp3I CGTCTC 1 cut(s) 158
FaeI CATG 4 cut(s) 51, 322, 535, 1165
FalI AAGNNNNNCTT 4 cut(s) 262, 294, 672, 704
FaqI GGGAC 2 cut(s) 224, 338
FatI CATG 4 cut(s) 47, 318, 531, 1161
FauI CCCGC 2 cut(s) 170, 363
FblI GTMKAC 2 cut(s) 138, 969
Fnu4HI GCNGC 4 cut(s) 32, 73, 187, 1131
FokI GGATG 5 cut(s) 296, 353, 748, 758, 1016
FriOI GRGCYC 1 cut(s) 1020
Fsp4HI GCNGC 4 cut(s) 32, 73, 187, 1131
FspBI CTAG 2 cut(s) 837, 1125
GluI GCNGC 4 cut(s) 32, 73, 187, 1131
GsuI CTGGAG 1 cut(s) 794
HaeIII GGCC 2 cut(s) 62, 1174
HapII CCGG 3 cut(s) 208, 626, 742
HgaI GACGC 4 cut(s) 133, 239, 541, 1163
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 4 cut(s) 51, 322, 535, 1165
HincII GTYRAC 2 cut(s) 139, 1059
HindII GTYRAC 2 cut(s) 139, 1059
HinfI GANTC 4 cut(s) 43, 223, 788, 869
HpaII CCGG 3 cut(s) 208, 626, 742
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 5 cut(s) 139, 324, 970, 1059, 1153
Hpy188I TCNGA 5 cut(s) 286, 496, 764, 846, 990
Hpy188III TCNNGA 4 cut(s) 227, 680, 962, 1001
Hpy8I GTNNAC 5 cut(s) 139, 324, 970, 1059, 1153
Hpy99I CGWCG 2 cut(s) 140, 194
HpyAV CCTTC 5 cut(s) 46, 62, 288, 325, 355
HpyCH4IV ACGT 2 cut(s) 174, 192
HpyCH4V TGCA 3 cut(s) 295, 337, 1046
HpyF10VI GCNNNNNNNGC 3 cut(s) 301, 1130, 1163
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 2 cut(s) 174, 192
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 4 cut(s) 51, 322, 535, 1165
Kzo9I GATC 5 cut(s) 124, 598, 721, 841, 958
LguI GCTCTTC 1 cut(s) 21
LmnI GCTCC 2 cut(s) 757, 953
Lsp1109I GCAGC 2 cut(s) 43, 1117
LweI GCATC 3 cut(s) 313, 331, 768
MaeI CTAG 2 cut(s) 837, 1125
MaeII ACGT 2 cut(s) 174, 192
MaeIII GTNAC 4 cut(s) 472, 553, 862, 1135
MalI GATC 5 cut(s) 126, 600, 723, 843, 960
MboI GATC 5 cut(s) 124, 598, 721, 841, 958
MflI RGATCY 2 cut(s) 721, 958
MhlI GDGCHC 1 cut(s) 1020
MluCI AATT 3 cut(s) 847, 992, 1101
MluI ACGCGT 2 cut(s) 231, 1155
MseI TTAA 3 cut(s) 698, 782, 885
MslI CAYNNNNRTG 1 cut(s) 1166
MspA1I CMGCKG 1 cut(s) 358
MspI CCGG 3 cut(s) 208, 626, 742
MspR9I CCNGG 5 cut(s) 209, 719, 742, 743, 812
MvaI CCWGG 2 cut(s) 719, 812
MvnI CGCG 4 cut(s) 144, 189, 233, 1157
MwoI GCNNNNNNNGC 3 cut(s) 301, 1130, 1163
NciI CCSGG 3 cut(s) 209, 742, 743
NcoI CCATGG 1 cut(s) 47
NdeII GATC 5 cut(s) 124, 598, 721, 841, 958
NlaIII CATG 4 cut(s) 51, 322, 535, 1165
NlaIV GGNNCC 2 cut(s) 354, 723
NmuCI GTSAC 3 cut(s) 472, 553, 1135
PaeR7I CTCGAG 1 cut(s) 962
PceI AGGCCT 1 cut(s) 1174
PciSI GCTCTTC 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 4 cut(s) 43, 223, 788, 869
PflFI GACNNNGTC 1 cut(s) 143
PinAI ACCGGT 1 cut(s) 625
PkrI GCNGC 4 cut(s) 33, 74, 188, 1132
PpuMI RGGWCCY 2 cut(s) 275, 352
PsiI TTATAA 1 cut(s) 561
Psp124BI GAGCTC 1 cut(s) 1020
Psp5II RGGWCCY 2 cut(s) 275, 352
Psp6I CCWGG 2 cut(s) 717, 810
PspGI CCWGG 2 cut(s) 717, 810
PspN4I GGNNCC 2 cut(s) 354, 723
PspPI GGNCC 2 cut(s) 275, 352
PspPPI RGGWCCY 2 cut(s) 275, 352
PsuI RGATCY 2 cut(s) 721, 958
PsyI GACNNNGTC 1 cut(s) 143
RsaI GTAC 2 cut(s) 630, 639
RsaNI GTAC 2 cut(s) 629, 638
RseI CAYNNNNRTG 1 cut(s) 1166
SacI GAGCTC 1 cut(s) 1020
SalI GTCGAC 1 cut(s) 137
SapI GCTCTTC 1 cut(s) 21
SaqAI TTAA 3 cut(s) 698, 782, 885
SatI GCNGC 4 cut(s) 32, 73, 187, 1131
Sau3AI GATC 5 cut(s) 124, 598, 721, 841, 958
Sau96I GGNCC 2 cut(s) 275, 352
ScrFI CCNGG 5 cut(s) 209, 719, 742, 743, 812
SduI GDGCHC 1 cut(s) 1020
SfaNI GCATC 3 cut(s) 313, 331, 768
Sfr274I CTCGAG 1 cut(s) 962
SinI GGWCC 2 cut(s) 275, 352
SlaI CTCGAG 1 cut(s) 962
SmaI CCCGGG 1 cut(s) 743
SmiMI CAYNNNNRTG 1 cut(s) 1166
SmlI CTYRAG 1 cut(s) 962
SmoI CTYRAG 1 cut(s) 962
Sse9I AATT 3 cut(s) 847, 992, 1101
SseBI AGGCCT 1 cut(s) 1174
SsiI CCGC 9 cut(s) 72, 142, 148, 163, 184, 187, 356, 852, 873
SspI AATATT 2 cut(s) 332, 403
SspMI CTAG 2 cut(s) 837, 1125
SstI GAGCTC 1 cut(s) 1020
StuI AGGCCT 1 cut(s) 1174
StyD4I CCNGG 5 cut(s) 207, 717, 740, 741, 810
StyI CCWWGG 1 cut(s) 47
TaiI ACGT 2 cut(s) 177, 195
TaqI TCGA 6 cut(s) 81, 123, 138, 501, 963, 1051
TasI AATT 3 cut(s) 847, 992, 1101
TauI GCSGC 2 cut(s) 75, 189
TfiI GAWTC 4 cut(s) 43, 223, 788, 869
Tru1I TTAA 3 cut(s) 698, 782, 885
Tru9I TTAA 3 cut(s) 698, 782, 885
TscAI CASTG 3 cut(s) 271, 1144, 1173
TseFI GTSAC 3 cut(s) 472, 553, 1135
TseI GCWGC 2 cut(s) 31, 1130
Tsp45I GTSAC 3 cut(s) 472, 553, 1135
TspDTI ATGAA 2 cut(s) 307, 1150
TspGWI ACGGA 1 cut(s) 33
TspMI CCCGGG 1 cut(s) 741
TspRI CASTG 3 cut(s) 271, 1144, 1173
Tth111I GACNNNGTC 1 cut(s) 143
VpaK11BI GGWCC 2 cut(s) 275, 352
XapI RAATTY 2 cut(s) 847, 992
XhoI CTCGAG 1 cut(s) 962
XmaI CCCGGG 1 cut(s) 741
XmiI GTMKAC 2 cut(s) 138, 969
XspI CTAG 2 cut(s) 837, 1125
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.