Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001148

Physical Location & Seq

Genomic Coordinates Reverse (-)

36184257 .. 36191296

Gene Structure 7040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG346100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAGATAAAGGAAAACGGAGAAGAAGAGCAGCAGATTGTGAATCCTTGGAAGGTGGAGGCCAAAGAAGGCGGCAAAATTGACTATGATAAGCTCATAGATCAGTTCGGTTGTCAGAGGATCGATCAGTCTCTTGTCGATCGTGTCCGCCGTCTCACCTCGCGTACTCCGCACGTTTTCCTCCGTCGTGACGTCTTCTTCGCTCACCGGGACTTTAATGAGATTCTGGATGCTTATGAGAGAGGAGAGAAGTTCTATTTGTACACAGGAAGAGGGCCTTCTTCTGAGGCTTTGCATTTGGGGCATCTCATCCCCTTCATGTTCACCAAATATTTGCAAGATGCCTTCAAGGTCCCTCTCGTTATACAACTTACCGACGACGAGAAATGTATATGGAAAAATCTCACAGTTGAAGAAAGCCAGAGACTTGCAAGGGAAAATGCTAAAGACATCATTGCTTGTGGTTTTGACGTAACAAGAACCTTTATCTTCTCTGATTTTGATTATGTTGGTGGTGCCTTCTACAAGAACATGATTAAGGTCGGAAAGTGTGTCACTTATAATAAGGTTGTTGGCATATTTGGTTTCACCGGTGAAGATCATATAGCAAAAGTTAGTTTTCCTCCTGTACAGGCGGTACCATCATTTCCAAGTTCATTTCCACATCTCTTCTCTGGCCAAGATAATCTTCGTTGTTTAATACCCTGTGCAATTGACCAGGATCCTTATTTTAGAATGACCCGAGATGTTGCTCCACGCATTGGATATCACAAACCTGCTTTAATCGAGTCTCTATTCTTCCCTGCCCTACAGGGAGAAACAGGAAAAATGTCGGCTAGTGATCCCAATTCTGCCATCTATGTAACTGATTCTGCAAAGGATATTAAGAGCAAGGTGTGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004830 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006436 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

301

Amino Acids

34.34

Weight (kDa)

6.19

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1b	PF00579	82 - 299	1.3e-15	tRNA synthetases class I (W and Y)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04600 AT3G04600 AT3G04600
fragaria_vesca	FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_5g27321
malus_domestica	MD04G1236500.v1.1 MD12G1255800.v1.1
prunus_persica	Prupe.7G057000_v2.0.a1 Prupe.7G057800_v2.0.a1
pyrus_communis	pycom04g21040 pycom12g23440
rosa_chinensis	RchiOBHm_Chr3g0493481 RchiOBHm_Chr7g0219201 RchiOBHm_Chr7g0219221 RchiOBHm_Chr7g0223011
rosa_laevigata	RLG00000002003 RLG00000002302 RLG00000002303 RLG00000022713
rosa_multiflora	Rmu_sc0000868.1_g000014 Rmu_sc0006373.1_g000002 Rmu_sc0006514.1_g000024 Rmu_sc0007422.1_g000005 Rmu_sc0009785.1_g000024 Rmu_sc0039697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234440 Rroxscaffold_3G00236350 Rroxscaffold_3G00237890 Rroxscaffold_3G00237970 Rroxscaffold_3G00238030 Rroxscaffold_3G00238960 Rroxscaffold_3G00238970 Rroxscaffold_5G00377610 Rroxscaffold_6G00391570 Rroxscaffold_7G00199590 Rroxscaffold_7G00199600
rosa_rugosa	Rorug07G0177500 Rorug07G0177500 Rorug07G0212800
rosa_samantha	Rh3AG310200 Rh3BG346300 Rh3CG344200 Rh3DG345400 Rh7AG319000 Rh7AG326700 Rh7AG357900 Rh7BG310900 Rh7BG346100 Rh7CG376000 Rh7DG318100 Rh7DG318200 Rh7DG352800
rosa_wichuraiana	Rw3G027260 Rw7G027160 Rw7G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	561
AatII	GACGTC	1 cut(s)	195
Acc36I	ACCTGC	1 cut(s)	784
Acc65I	GGTACC	1 cut(s)	637
AccB1I	GGYRCC	2 cut(s)	515, 637
AccB7I	CCANNNNNTGG	1 cut(s)	761
AccII	CGCG	1 cut(s)	163
AciI	CCGC	4 cut(s)	72, 148, 170, 635
AclWI	GGATC	4 cut(s)	128, 716, 729, 836
AcoI	YGGCCR	1 cut(s)	676
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	4 cut(s)	166, 263, 630, 639
AfiI	CCNNNNNNNGG	1 cut(s)	761
AgeI	ACCGGT	1 cut(s)	590
AgsI	TTSAA	2 cut(s)	349, 413
AjnI	CCWGG	1 cut(s)	717
AjuI	GAANNNNNNNTTGG	2 cut(s)	672, 704
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw26I	GTCTC	4 cut(s)	135, 158, 418, 795
AlwI	GGATC	4 cut(s)	128, 716, 729, 836
Ama87I	CYCGRG	1 cut(s)	741
AoxI	GGCC	3 cut(s)	60, 275, 676
ApeKI	GCWGC	1 cut(s)	31
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AsiGI	ACCGGT	1 cut(s)	590
Asp718I	GGTACC	1 cut(s)	637
AspS9I	GGNCC	2 cut(s)	275, 352
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	5 cut(s)	148, 197, 316, 580, 605
AvaI	CYCGRG	1 cut(s)	741
AvaII	GGWCC	1 cut(s)	352
BalI	TGGCCA	1 cut(s)	678
BamHI	GGATCC	1 cut(s)	721
BanI	GGYRCC	2 cut(s)	515, 637
BbsI	GAAGAC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	2 cut(s)	649, 863
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	1 cut(s)	719
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	4 cut(s)	135, 158, 418, 795
BfaI	CTAG	1 cut(s)	837
BfmI	CTRYAG	1 cut(s)	809
BfuAI	ACCTGC	1 cut(s)	784
BisI	GCNGC	2 cut(s)	32, 73
BlsI	GCNGC	2 cut(s)	33, 74
Bme1390I	CCNGG	2 cut(s)	209, 719
Bme18I	GGWCC	1 cut(s)	352
BmeT110I	CYCGRG	1 cut(s)	741
BmgT120I	GGNCC	2 cut(s)	275, 352
BmiI	GGNNCC	4 cut(s)	354, 517, 639, 723
BmrFI	CCNGG	2 cut(s)	209, 719
BmsI	GCATC	3 cut(s)	220, 313, 331
BpiI	GAAGAC	1 cut(s)	187
BpuMI	CCSGG	1 cut(s)	209
Bsa29I	ATCGAT	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	590
Bsc4I	CCNNNNNNNGG	1 cut(s)	761
Bse118I	RCCGGY	1 cut(s)	590
Bse3DI	GCAATG	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	719
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	2 cut(s)	235, 309
BseLI	CCNNNNNNNGG	1 cut(s)	761
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	163
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	3 cut(s)	62, 277, 678
BshNI	GGYRCC	2 cut(s)	515, 637
BshTI	ACCGGT	1 cut(s)	590
BshVI	ATCGAT	1 cut(s)	123
BsiEI	CGRYCG	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	741
BsiSI	CCGG	2 cut(s)	208, 591
BslFI	GGGAC	2 cut(s)	224, 338
BslI	CCNNNNNNNGG	1 cut(s)	761
BsmAI	GTCTC	4 cut(s)	135, 158, 418, 795
BsmBI	CGTCTC	1 cut(s)	158
BsmFI	GGGAC	2 cut(s)	224, 338
BsnI	GGCC	3 cut(s)	62, 277, 678
BsoBI	CYCGRG	1 cut(s)	741
Bsp1407I	TGTACA	2 cut(s)	261, 628
Bsp143I	GATC	7 cut(s)	100, 120, 124, 139, 598, 721, 841
BspACI	CCGC	4 cut(s)	72, 148, 170, 635
BspANI	GGCC	3 cut(s)	62, 277, 678
BspCNI	CTCAG	1 cut(s)	277
BspDI	ATCGAT	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	4 cut(s)	354, 517, 639, 723
BspMI	ACCTGC	1 cut(s)	784
BspPI	GGATC	4 cut(s)	128, 716, 729, 836
BspQI	GCTCTTC	1 cut(s)	21
BspT107I	GGYRCC	2 cut(s)	515, 637
BsrDI	GCAATG	1 cut(s)	453
BsrFI	RCCGGY	1 cut(s)	590
BsrGI	TGTACA	2 cut(s)	261, 628
BssAI	RCCGGY	1 cut(s)	590
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	7 cut(s)	100, 120, 124, 139, 598, 721, 841
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	719
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	3 cut(s)	21, 265, 674
BstACI	GRCGYC	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	897
BstAUI	TGTACA	2 cut(s)	261, 628
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	2 cut(s)	235, 309
BstFNI	CGCG	1 cut(s)	163
BstKTI	GATC	7 cut(s)	103, 123, 127, 142, 601, 724, 844
BstMAI	GTCTC	4 cut(s)	135, 158, 418, 795
BstMBI	GATC	7 cut(s)	100, 120, 124, 139, 598, 721, 841
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	3 cut(s)	169, 301, 897
BstNI	CCWGG	1 cut(s)	719
BstSCI	CCNGG	2 cut(s)	207, 717
BstSFI	CTRYAG	1 cut(s)	809
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	43
BstV2I	GAAGAC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	721
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	3 cut(s)	62, 277, 678
BsuTUI	ATCGAT	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	235, 309
BveI	ACCTGC	1 cut(s)	784
Cfr10I	RCCGGY	1 cut(s)	590
Cfr13I	GGNCC	2 cut(s)	275, 352
ClaI	ATCGAT	1 cut(s)	123
Csp6I	GTAC	4 cut(s)	165, 262, 629, 638
CspAI	ACCGGT	1 cut(s)	590
CviAII	CATG	2 cut(s)	319, 532
CviJI	RGCY	7 cut(s)	62, 94, 277, 290, 420, 678, 836
CviKI_1	RGCY	7 cut(s)	62, 94, 277, 290, 420, 678, 836
CviQI	GTAC	4 cut(s)	165, 262, 629, 638
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	7 cut(s)	102, 122, 126, 141, 600, 723, 843
DpnII	GATC	7 cut(s)	100, 120, 124, 139, 598, 721, 841
EaeI	YGGCCR	1 cut(s)	676
Eam1104I	CTCTTC	3 cut(s)	21, 265, 674
EarI	CTCTTC	3 cut(s)	21, 265, 674
EciI	GGCGGA	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	47
Eco32I	GATATC	1 cut(s)	767
Eco47I	GGWCC	1 cut(s)	352
Eco88I	CYCGRG	1 cut(s)	741
EcoO109I	RGGNCCY	2 cut(s)	275, 352
EcoRII	CCWGG	1 cut(s)	717
EcoRV	GATATC	1 cut(s)	767
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	2 cut(s)	322, 535
FalI	AAGNNNNNCTT	4 cut(s)	262, 294, 672, 704
FaqI	GGGAC	2 cut(s)	224, 338
FatI	CATG	2 cut(s)	318, 531
FauNDI	CATATG	1 cut(s)	902
Fnu4HI	GCNGC	2 cut(s)	32, 73
FokI	GGATG	2 cut(s)	242, 296
Fsp4HI	GCNGC	2 cut(s)	32, 73
FspBI	CTAG	1 cut(s)	837
GluI	GCNGC	2 cut(s)	32, 73
HaeIII	GGCC	3 cut(s)	62, 277, 678
HapII	CCGG	2 cut(s)	208, 591
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	322, 535
HinfI	GANTC	4 cut(s)	43, 223, 788, 869
HpaII	CCGG	2 cut(s)	208, 591
HphI	GGTGA	5 cut(s)	148, 197, 316, 580, 605
Hpy166II	GTNNAC	2 cut(s)	264, 324
Hpy188I	TCNGA	4 cut(s)	117, 286, 496, 545
Hpy188III	TCNNGA	2 cut(s)	188, 227
Hpy8I	GTNNAC	2 cut(s)	264, 324
Hpy99I	CGWCG	3 cut(s)	189, 380, 383
HpyAV	CCTTC	6 cut(s)	46, 62, 288, 325, 355, 529
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4IV	ACGT	3 cut(s)	174, 192, 471
HpyCH4V	TGCA	6 cut(s)	295, 337, 431, 710, 875, 900
HpyF10VI	GCNNNNNNNGC	3 cut(s)	169, 301, 897
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	3 cut(s)	174, 192, 471
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	322, 535
KpnI	GGTACC	1 cut(s)	641
Kzo9I	GATC	7 cut(s)	100, 120, 124, 139, 598, 721, 841
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	1 cut(s)	757
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	3 cut(s)	220, 313, 331
MaeI	CTAG	1 cut(s)	837
MaeII	ACGT	3 cut(s)	174, 192, 471
MaeIII	GTNAC	4 cut(s)	188, 472, 553, 862
MalI	GATC	7 cut(s)	102, 122, 126, 141, 600, 723, 843
MboI	GATC	7 cut(s)	100, 120, 124, 139, 598, 721, 841
MfeI	CAATTG	1 cut(s)	711
MflI	RGATCY	1 cut(s)	721
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	3 cut(s)	78, 711, 847
MluNI	TGGCCA	1 cut(s)	678
MlyI	GAGTC	1 cut(s)	797
MmeI	TCCRAC	1 cut(s)	523
MnlI	CCTC	9 cut(s)	52, 111, 169, 191, 236, 266, 280, 366, 633
Mox20I	TGGCCA	1 cut(s)	678
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	5 cut(s)	216, 537, 698, 782, 885
Msp20I	TGGCCA	1 cut(s)	678
MspI	CCGG	2 cut(s)	208, 591
MspR9I	CCNGG	2 cut(s)	209, 719
MunI	CAATTG	1 cut(s)	711
MvaI	CCWGG	1 cut(s)	719
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	3 cut(s)	169, 301, 897
NciI	CCSGG	1 cut(s)	209
NdeI	CATATG	1 cut(s)	902
NdeII	GATC	7 cut(s)	100, 120, 124, 139, 598, 721, 841
NlaIII	CATG	2 cut(s)	322, 535
NlaIV	GGNNCC	4 cut(s)	354, 517, 639, 723
NmuCI	GTSAC	2 cut(s)	188, 553
PciSI	GCTCTTC	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	148
PfeI	GAWTC	3 cut(s)	43, 223, 869
PflMI	CCANNNNNTGG	1 cut(s)	761
PinAI	ACCGGT	1 cut(s)	590
PkrI	GCNGC	2 cut(s)	33, 74
Ple19I	CGATCG	1 cut(s)	142
PleI	GAGTC	1 cut(s)	796
PpsI	GAGTC	1 cut(s)	796
PpuMI	RGGWCCY	1 cut(s)	352
PsiI	TTATAA	1 cut(s)	561
Psp5II	RGGWCCY	1 cut(s)	352
Psp6I	CCWGG	1 cut(s)	717
PspGI	CCWGG	1 cut(s)	717
PspN4I	GGNNCC	4 cut(s)	354, 517, 639, 723
PspPI	GGNCC	2 cut(s)	275, 352
PspPPI	RGGWCCY	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	721
PvuI	CGATCG	1 cut(s)	142
RsaI	GTAC	4 cut(s)	166, 263, 630, 639
RsaNI	GTAC	4 cut(s)	165, 262, 629, 638
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	5 cut(s)	216, 537, 698, 782, 885
SatI	GCNGC	2 cut(s)	32, 73
Sau3AI	GATC	7 cut(s)	100, 120, 124, 139, 598, 721, 841
Sau96I	GGNCC	2 cut(s)	275, 352
SchI	GAGTC	1 cut(s)	797
ScrFI	CCNGG	2 cut(s)	209, 719
SfaNI	GCATC	3 cut(s)	220, 313, 331
SfcI	CTRYAG	1 cut(s)	809
SgrAI	CRCCGGYG	1 cut(s)	590
SinI	GGWCC	1 cut(s)	352
Sse9I	AATT	3 cut(s)	78, 711, 847
SsiI	CCGC	4 cut(s)	72, 148, 170, 635
SspI	AATATT	1 cut(s)	332
SspMI	CTAG	1 cut(s)	837
StyD4I	CCNGG	2 cut(s)	207, 717
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	409
TaiI	ACGT	3 cut(s)	177, 195, 474
TaqI	TCGA	3 cut(s)	123, 138, 786
TasI	AATT	3 cut(s)	78, 711, 847
TatI	WGTACW	2 cut(s)	261, 628
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	3 cut(s)	43, 223, 869
Tru1I	TTAA	5 cut(s)	216, 537, 698, 782, 885
Tru9I	TTAA	5 cut(s)	216, 537, 698, 782, 885
TseFI	GTSAC	2 cut(s)	188, 553
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	2 cut(s)	188, 553
TspDTI	ATGAA	2 cut(s)	307, 645
TspGWI	ACGGA	2 cut(s)	33, 173
Van91I	CCANNNNNTGG	1 cut(s)	761
VpaK11BI	GGWCC	1 cut(s)	352
XspI	CTAG	1 cut(s)	837
ZraI	GACGTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.