Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001148

Physical Location & Seq

Genomic Coordinates Forward (+)

30020382 .. 30020867

Gene Structure 486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG310900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCTACAAAAAGCAAAAACTGTATGGAGAACAAAAGGGCATTGGAGATACAAGACAATGGAGAAGCAGAGCAACAGATAGTGACTCCATGGAGGGTGGAGGCTAAAGGTGGCAGCAAAATCGATTACGATAAGCTTATTAACCAGTTTGGTTGCCAGAGGCTCGATCAATCTCTTAACGACCAGGTCCACCGACTCACATCACGTGCTCCGCACGTCTTACTCCGCCGTGGGGTTTTCTTTGCCCACCGGGACTTCAATGAGATTCTAGATGCTTATGAGAAAGGAGACAAGTTATATTTGTACACAGGAAGAGGGCCTTCTGAGTCTTTGCATTTGGGACATCTCATCCCCTTCATGTTCACTAAATATTTGCAAGATGCCTTCAAGGTTCCTCTGGTTATACAACTCACTGATGACGAGAAATGCATGTGGAAAAAACCTCACCGTGGAAGAAAGCCAGAGACTTGCAAGGGAGAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004830 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006436 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

161

Amino Acids

18.67

Weight (kDa)

8.78

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04600 AT3G04600 AT3G04600
fragaria_vesca	FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_5g27321
malus_domestica	MD04G1236500.v1.1 MD12G1255800.v1.1
prunus_persica	Prupe.7G057000_v2.0.a1 Prupe.7G057800_v2.0.a1
pyrus_communis	pycom04g21040 pycom12g23440
rosa_chinensis	RchiOBHm_Chr3g0493481 RchiOBHm_Chr7g0219201 RchiOBHm_Chr7g0219221 RchiOBHm_Chr7g0223011
rosa_laevigata	RLG00000002003 RLG00000002302 RLG00000002303 RLG00000022713
rosa_multiflora	Rmu_sc0000868.1_g000014 Rmu_sc0006373.1_g000002 Rmu_sc0006514.1_g000024 Rmu_sc0007422.1_g000005 Rmu_sc0009785.1_g000024 Rmu_sc0039697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234440 Rroxscaffold_3G00236350 Rroxscaffold_3G00237890 Rroxscaffold_3G00237970 Rroxscaffold_3G00238030 Rroxscaffold_3G00238960 Rroxscaffold_3G00238970 Rroxscaffold_5G00377610 Rroxscaffold_6G00391570 Rroxscaffold_7G00199590 Rroxscaffold_7G00199600
rosa_rugosa	Rorug07G0177500 Rorug07G0177500 Rorug07G0212800
rosa_samantha	Rh3AG310200 Rh3BG346300 Rh3CG344200 Rh3DG345400 Rh7AG319000 Rh7AG326700 Rh7AG357900 Rh7BG310900 Rh7BG346100 Rh7CG376000 Rh7DG318100 Rh7DG318200 Rh7DG352800
rosa_wichuraiana	Rw3G027260 Rw7G027160 Rw7G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	212, 226
AcvI	CACGTG	1 cut(s)	206
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	2 cut(s)	232, 449
AgsI	TTSAA	2 cut(s)	259, 388
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	2 cut(s)	282, 458
AoxI	GGCC	1 cut(s)	317
ApeKI	GCWGC	1 cut(s)	114
AspS9I	GGNCC	2 cut(s)	187, 317
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	187
BbrPI	CACGTG	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	126
BceAI	ACGGC	1 cut(s)	213
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	1 cut(s)	185
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	2 cut(s)	282, 458
BfaI	CTAG	1 cut(s)	269
BisI	GCNGC	1 cut(s)	115
BlsI	GCNGC	1 cut(s)	116
Bme1390I	CCNGG	2 cut(s)	185, 251
Bme18I	GGWCC	1 cut(s)	187
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	2 cut(s)	187, 317
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	2 cut(s)	185, 251
BmsI	GCATC	2 cut(s)	262, 370
BpuMI	CCSGG	1 cut(s)	251
Bsa29I	ATCGAT	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	206
BsaJI	CCNNGG	3 cut(s)	89, 229, 448
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 449
Bse1I	ACTGG	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	185
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	3 cut(s)	89, 229, 448
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	2 cut(s)	232, 449
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	126
BshFI	GGCC	1 cut(s)	319
BshVI	ATCGAT	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	2 cut(s)	266, 354
BslI	CCNNNNNNNGG	2 cut(s)	232, 449
BsmAI	GTCTC	2 cut(s)	282, 458
BsmFI	GGGAC	2 cut(s)	266, 354
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	166
Bsp19I	CCATGG	1 cut(s)	89
BspACI	CCGC	2 cut(s)	212, 226
BspANI	GGCC	1 cut(s)	319
BspCNI	CTCAG	1 cut(s)	316
BspDI	ATCGAT	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	393
BsrGI	TGTACA	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	3 cut(s)	89, 229, 448
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	2 cut(s)	23, 449
Bst6I	CTCTTC	1 cut(s)	307
BstAUI	TGTACA	1 cut(s)	303
BstBAI	YACGTR	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	324
BstDSI	CCRYGG	3 cut(s)	89, 229, 448
BstF5I	GGATG	1 cut(s)	348
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	2 cut(s)	282, 458
BstMBI	GATC	1 cut(s)	166
BstNI	CCWGG	1 cut(s)	185
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	2 cut(s)	183, 249
BstV1I	GCAGC	1 cut(s)	126
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	319
BsuTUI	ATCGAT	1 cut(s)	123
BtgI	CCRYGG	3 cut(s)	89, 229, 448
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	411
Cfr13I	GGNCC	2 cut(s)	187, 317
ClaI	ATCGAT	1 cut(s)	123
CsiI	ACCWGGT	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	3 cut(s)	90, 358, 430
CviJI	RGCY	6 cut(s)	5, 104, 136, 163, 319, 460
CviKI_1	RGCY	6 cut(s)	5, 104, 136, 163, 319, 460
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
EciI	GGCGGA	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	187
Eco72I	CACGTG	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	89
EcoT22I	ATGCAT	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	3 cut(s)	93, 361, 433
FaiI	YATR	7 cut(s)	26, 91, 279, 298, 359, 404, 431
FalI	AAGNNNNNCTT	2 cut(s)	304, 336
FaqI	GGGAC	2 cut(s)	266, 354
FatI	CATG	3 cut(s)	89, 357, 429
Fnu4HI	GCNGC	1 cut(s)	115
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	1 cut(s)	115
FspBI	CTAG	1 cut(s)	269
GluI	GCNGC	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	319
HapII	CCGG	1 cut(s)	250
Hin1II	CATG	3 cut(s)	93, 361, 433
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	4 cut(s)	85, 195, 265, 326
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	3 cut(s)	190, 306, 363
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	3 cut(s)	190, 306, 363
HpyAV	CCTTC	3 cut(s)	330, 364, 394
HpyCH4III	ACNGT	2 cut(s)	23, 449
HpyCH4IV	ACGT	2 cut(s)	205, 216
HpyCH4V	TGCA	4 cut(s)	334, 376, 429, 471
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	2 cut(s)	205, 216
Hsp92II	CATG	3 cut(s)	93, 361, 433
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	8 cut(s)	158, 170, 170, 197, 263, 294, 383, 474
Lsp1109I	GCAGC	1 cut(s)	126
LweI	GCATC	2 cut(s)	262, 370
MabI	ACCWGGT	1 cut(s)	183
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	2 cut(s)	205, 216
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	2 cut(s)	324, 465
MhlI	GDGCHC	1 cut(s)	211
MlyI	GAGTC	3 cut(s)	79, 189, 335
MnlI	CCTC	6 cut(s)	87, 94, 153, 308, 405, 453
Mph1103I	ATGCAT	1 cut(s)	431
MseI	TTAA	2 cut(s)	141, 177
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	2 cut(s)	185, 251
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	185
NciI	CCSGG	1 cut(s)	251
NcoI	CCATGG	1 cut(s)	89
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	3 cut(s)	93, 361, 433
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	431
NspI	RCATGY	1 cut(s)	433
PctI	GAATGC	1 cut(s)	485
PfeI	GAWTC	1 cut(s)	265
PflFI	GACNNNGTC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	116
PleI	GAGTC	3 cut(s)	79, 189, 334
PmaCI	CACGTG	1 cut(s)	206
PmlI	CACGTG	1 cut(s)	206
PpsI	GAGTC	3 cut(s)	79, 189, 334
Ppu21I	YACGTR	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	183
PspCI	CACGTG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	2 cut(s)	187, 317
PsyI	GACNNNGTC	1 cut(s)	185
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SaqAI	TTAA	2 cut(s)	141, 177
SatI	GCNGC	1 cut(s)	115
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	2 cut(s)	187, 317
SchI	GAGTC	3 cut(s)	79, 189, 335
ScrFI	CCNGG	2 cut(s)	185, 251
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	7 cut(s)	112, 138, 189, 208, 219, 393, 445
SexAI	ACCWGGT	1 cut(s)	183
SfaNI	GCATC	2 cut(s)	262, 370
SinI	GGWCC	1 cut(s)	187
SsiI	CCGC	2 cut(s)	212, 226
SspI	AATATT	1 cut(s)	371
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	2 cut(s)	183, 249
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	2 cut(s)	23, 449
TaiI	ACGT	2 cut(s)	208, 219
TaqI	TCGA	2 cut(s)	123, 165
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	2 cut(s)	141, 177
Tru9I	TTAA	2 cut(s)	141, 177
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	114
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	346
TspRI	CASTG	1 cut(s)	418
Tth111I	GACNNNGTC	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	187
XbaI	TCTAGA	1 cut(s)	268
XceI	RCATGY	1 cut(s)	433
XspI	CTAG	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.