Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009785.1

Orthogroup ID

OG0001148

Physical Location & Seq

Genomic Coordinates Forward (+)

75253 .. 79375

Gene Structure 4123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009785.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atggctaatggctcggtggtgatgcaggaagcattttgtgggtgctgccggttggtggctttgctagctggaacgcgggagcttgggcaggatgctgcaaggacaacgcgggaggcaaggctgcggtgcggaagcattttgtgggtgctgccggttggtggctttgctagctggaacgcgggagcttgggcaggatgctgcaaggacaacgcgggaggcaaggctgcggtgcggatgctgcaaggacagcgcgggaggcaaggctgcggtgcgttttcctattctatcgatctcgtacgcaaatcaaaattaattagtaaagggagaataggaaaacgaccaagtctaccatctcacctcgcgtgcgccacacgcctccgccgcaaggtcttcttcgctcaccgagacttcaatgagattcttgatgcttatgagaaaggagagaagttctatctgtacacaggaagagggccttcttctgagtctttacatttgaggcatctcatccttttcatgttcactaaatatttgcaagatgccttcaaggttcctcttgttatacaactcactgatgacgagaagtgcatgtggaaaaatctcaccgtggaagaaaaccagagacttgctagggagaatgctaaagacattattgcttgtggctttgacgtaacaagaaccttcatcttctctaattttgattatgttggtggtgccttctacaaaaacatggtgaaggtgggaaagtgtgtgacctacaataaggttgctggcatatttggtttcaccggtgaagatcatataggaaaagttagttttccaccaatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004830 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006436 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

275

Amino Acids

30.59

Weight (kDa)

9.51

Isoelectric Point (pI)

35.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04600 AT3G04600 AT3G04600
fragaria_vesca	FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_5g27321
malus_domestica	MD04G1236500.v1.1 MD12G1255800.v1.1
prunus_persica	Prupe.7G057000_v2.0.a1 Prupe.7G057800_v2.0.a1
pyrus_communis	pycom04g21040 pycom12g23440
rosa_chinensis	RchiOBHm_Chr3g0493481 RchiOBHm_Chr7g0219201 RchiOBHm_Chr7g0219221 RchiOBHm_Chr7g0223011
rosa_laevigata	RLG00000002003 RLG00000002302 RLG00000002303 RLG00000022713
rosa_multiflora	Rmu_sc0000868.1_g000014 Rmu_sc0006373.1_g000002 Rmu_sc0006514.1_g000024 Rmu_sc0007422.1_g000005 Rmu_sc0009785.1_g000024 Rmu_sc0039697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234440 Rroxscaffold_3G00236350 Rroxscaffold_3G00237890 Rroxscaffold_3G00237970 Rroxscaffold_3G00238030 Rroxscaffold_3G00238960 Rroxscaffold_3G00238970 Rroxscaffold_5G00377610 Rroxscaffold_6G00391570 Rroxscaffold_7G00199590 Rroxscaffold_7G00199600
rosa_rugosa	Rorug07G0177500 Rorug07G0177500 Rorug07G0212800
rosa_samantha	Rh3AG310200 Rh3BG346300 Rh3CG344200 Rh3DG345400 Rh7AG319000 Rh7AG326700 Rh7AG357900 Rh7BG310900 Rh7BG346100 Rh7CG376000 Rh7DG318100 Rh7DG318200 Rh7DG352800
rosa_wichuraiana	Rw3G027260 Rw7G027160 Rw7G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	710
AccI	GTMKAC	1 cut(s)	346
AccII	CGCG	6 cut(s)	76, 109, 179, 212, 252, 362
AfaI	GTAC	2 cut(s)	297, 458
AfiI	CCNNNNNNNGG	3 cut(s)	55, 158, 385
AgeI	ACCGGT	1 cut(s)	785
AgsI	TTSAA	2 cut(s)	412, 544
AluBI	AGCT	4 cut(s)	68, 82, 171, 185
AluI	AGCT	4 cut(s)	68, 82, 171, 185
Alw26I	GTCTC	2 cut(s)	399, 613
AoxI	GGCC	1 cut(s)	470
ApeKI	GCWGC	8 cut(s)	45, 95, 121, 148, 198, 224, 238, 264
AseI	ATTAAT	1 cut(s)	311
AsiGI	ACCGGT	1 cut(s)	785
AspLEI	GCGC	2 cut(s)	252, 368
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	7 cut(s)	31, 347, 392, 592, 742, 775, 800
AsuNHI	GCTAGC	2 cut(s)	64, 167
BanI	GGYRCC	1 cut(s)	710
BbsI	GAAGAC	1 cut(s)	382
BbvI	GCAGC	8 cut(s)	32, 82, 108, 135, 185, 211, 225, 251
BccI	CCATC	1 cut(s)	358
BcoDI	GTCTC	2 cut(s)	399, 613
BfaI	CTAG	3 cut(s)	65, 168, 627
BisI	GCNGC	9 cut(s)	46, 96, 122, 149, 199, 225, 239, 265, 382
BlsI	GCNGC	9 cut(s)	47, 97, 123, 150, 200, 226, 240, 266, 383
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	2 cut(s)	549, 712
BmsI	GCATC	7 cut(s)	12, 82, 185, 225, 415, 508, 526
BmtI	GCTAGC	2 cut(s)	68, 171
BpiI	GAAGAC	1 cut(s)	382
Bsa29I	ATCGAT	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	603
BsaWI	WCCGGW	1 cut(s)	785
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 158, 385
Bse118I	RCCGGY	3 cut(s)	48, 151, 785
BseCI	ATCGAT	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	603
BseGI	GGATG	4 cut(s)	97, 200, 240, 504
BseLI	CCNNNNNNNGG	3 cut(s)	55, 158, 385
BseMII	CTCAG	1 cut(s)	471
BseXI	GCAGC	8 cut(s)	32, 82, 108, 135, 185, 211, 225, 251
Bsh1236I	CGCG	6 cut(s)	76, 109, 179, 212, 252, 362
BshFI	GGCC	1 cut(s)	472
BshNI	GGYRCC	1 cut(s)	710
BshTI	ACCGGT	1 cut(s)	785
BshVI	ATCGAT	1 cut(s)	288
BsiSI	CCGG	3 cut(s)	49, 152, 786
BsiWI	CGTACG	1 cut(s)	295
BslI	CCNNNNNNNGG	3 cut(s)	55, 158, 385
BsmAI	GTCTC	2 cut(s)	399, 613
BsmI	GAATGC	1 cut(s)	640
BsnI	GGCC	1 cut(s)	472
Bsp1407I	TGTACA	1 cut(s)	456
Bsp143I	GATC	2 cut(s)	289, 793
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	1 cut(s)	472
BspDI	ATCGAT	1 cut(s)	288
BspFNI	CGCG	6 cut(s)	76, 109, 179, 212, 252, 362
BspLI	GGNNCC	2 cut(s)	549, 712
BspOI	GCTAGC	2 cut(s)	68, 171
BspT107I	GGYRCC	1 cut(s)	710
BsrFI	RCCGGY	3 cut(s)	48, 151, 785
BsrGI	TGTACA	1 cut(s)	456
BssAI	RCCGGY	3 cut(s)	48, 151, 785
BssECI	CCNNGG	1 cut(s)	603
BssMI	GATC	2 cut(s)	289, 793
Bst4CI	ACNGT	1 cut(s)	604
Bst6I	CTCTTC	1 cut(s)	460
BstAUI	TGTACA	1 cut(s)	456
BstC8I	GCNNGC	4 cut(s)	66, 169, 364, 769
BstDEI	CTNAG	1 cut(s)	480
BstDSI	CCRYGG	1 cut(s)	603
BstF5I	GGATG	4 cut(s)	97, 200, 240, 504
BstFNI	CGCG	6 cut(s)	76, 109, 179, 212, 252, 362
BstHHI	GCGC	2 cut(s)	252, 368
BstKTI	GATC	2 cut(s)	292, 796
BstMAI	GTCTC	2 cut(s)	399, 613
BstMBI	GATC	2 cut(s)	289, 793
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 168, 238, 247, 256, 372, 381
BstNSI	RCATGY	1 cut(s)	589
BstUI	CGCG	6 cut(s)	76, 109, 179, 212, 252, 362
BstV1I	GCAGC	8 cut(s)	32, 82, 108, 135, 185, 211, 225, 251
BstV2I	GAAGAC	1 cut(s)	382
Bsu15I	ATCGAT	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	472
BsuTUI	ATCGAT	1 cut(s)	288
BtgI	CCRYGG	1 cut(s)	603
BtsCI	GGATG	4 cut(s)	97, 200, 240, 504
BtsIMutI	CAGTG	1 cut(s)	567
Cac8I	GCNNGC	4 cut(s)	66, 169, 364, 769
CfoI	GCGC	2 cut(s)	252, 368
Cfr10I	RCCGGY	3 cut(s)	48, 151, 785
Cfr13I	GGNCC	1 cut(s)	470
ClaI	ATCGAT	1 cut(s)	288
Csp6I	GTAC	2 cut(s)	296, 457
CspAI	ACCGGT	1 cut(s)	785
CviAII	CATG	3 cut(s)	514, 586, 727
CviQI	GTAC	2 cut(s)	296, 457
DdeI	CTNAG	1 cut(s)	480
DpnI	GATC	2 cut(s)	291, 795
DpnII	GATC	2 cut(s)	289, 793
Eam1104I	CTCTTC	1 cut(s)	460
EarI	CTCTTC	1 cut(s)	460
EciI	GGCGGA	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	470
FaeI	CATG	3 cut(s)	517, 589, 730
FalI	AAGNNNNNCTT	4 cut(s)	377, 409, 457, 489
FatI	CATG	3 cut(s)	513, 585, 726
FauI	CCCGC	5 cut(s)	69, 102, 172, 205, 245
FblI	GTMKAC	1 cut(s)	346
Fnu4HI	GCNGC	9 cut(s)	46, 96, 122, 149, 199, 225, 239, 265, 382
FokI	GGATG	4 cut(s)	104, 207, 247, 491
Fsp4HI	GCNGC	9 cut(s)	46, 96, 122, 149, 199, 225, 239, 265, 382
FspBI	CTAG	3 cut(s)	65, 168, 627
GlaI	GCGC	2 cut(s)	251, 367
GluI	GCNGC	9 cut(s)	46, 96, 122, 149, 199, 225, 239, 265, 382
HaeIII	GGCC	1 cut(s)	472
HapII	CCGG	3 cut(s)	49, 152, 786
HhaI	GCGC	2 cut(s)	252, 368
Hin1II	CATG	3 cut(s)	517, 589, 730
Hin6I	GCGC	2 cut(s)	250, 366
HinP1I	GCGC	2 cut(s)	250, 366
HinfI	GANTC	2 cut(s)	418, 482
HpaII	CCGG	3 cut(s)	49, 152, 786
HphI	GGTGA	7 cut(s)	31, 347, 392, 592, 742, 775, 800
Hpy166II	GTNNAC	3 cut(s)	347, 459, 519
Hpy188I	TCNGA	1 cut(s)	481
Hpy188III	TCNNGA	1 cut(s)	422
Hpy8I	GTNNAC	3 cut(s)	347, 459, 519
HpyAV	CCTTC	5 cut(s)	483, 550, 688, 724, 727
HpyCH4III	ACNGT	1 cut(s)	604
HpyCH4IV	ACGT	1 cut(s)	666
HpyCH4V	TGCA	6 cut(s)	25, 98, 201, 241, 532, 585
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 168, 238, 247, 256, 372, 381
HpyF3I	CTNAG	1 cut(s)	480
HpySE526I	ACGT	1 cut(s)	666
Hsp92II	CATG	3 cut(s)	517, 589, 730
HspAI	GCGC	2 cut(s)	250, 366
Kzo9I	GATC	2 cut(s)	289, 793
LmnI	GCTCC	2 cut(s)	79, 182
Lsp1109I	GCAGC	8 cut(s)	32, 82, 108, 135, 185, 211, 225, 251
LweI	GCATC	7 cut(s)	12, 82, 185, 225, 415, 508, 526
MaeI	CTAG	3 cut(s)	65, 168, 627
MaeII	ACGT	1 cut(s)	666
MaeIII	GTNAC	2 cut(s)	667, 748
MalI	GATC	2 cut(s)	291, 795
MboI	GATC	2 cut(s)	289, 793
MboII	GAAGA	7 cut(s)	382, 385, 468, 477, 620, 676, 803
MluCI	AATT	3 cut(s)	308, 312, 691
MlyI	GAGTC	1 cut(s)	491
MnlI	CCTC	8 cut(s)	106, 209, 249, 368, 386, 461, 489, 561
MseI	TTAA	1 cut(s)	311
MspI	CCGG	3 cut(s)	49, 152, 786
Mva1269I	GAATGC	1 cut(s)	640
MvnI	CGCG	6 cut(s)	76, 109, 179, 212, 252, 362
MwoI	GCNNNNNNNGC	7 cut(s)	65, 168, 238, 247, 256, 372, 381
NdeII	GATC	2 cut(s)	289, 793
NheI	GCTAGC	2 cut(s)	64, 167
NlaIII	CATG	3 cut(s)	517, 589, 730
NlaIV	GGNNCC	2 cut(s)	549, 712
NmuCI	GTSAC	1 cut(s)	748
NspI	RCATGY	1 cut(s)	589
PctI	GAATGC	1 cut(s)	640
PfeI	GAWTC	1 cut(s)	418
Pfl23II	CGTACG	1 cut(s)	295
PflFI	GACNNNGTC	1 cut(s)	342
PinAI	ACCGGT	1 cut(s)	785
PkrI	GCNGC	9 cut(s)	47, 97, 123, 150, 200, 226, 240, 266, 383
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PshBI	ATTAAT	1 cut(s)	311
PspLI	CGTACG	1 cut(s)	295
PspN4I	GGNNCC	2 cut(s)	549, 712
PspPI	GGNCC	1 cut(s)	470
PsyI	GACNNNGTC	1 cut(s)	342
RsaI	GTAC	2 cut(s)	297, 458
RsaNI	GTAC	2 cut(s)	296, 457
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	9 cut(s)	46, 96, 122, 149, 199, 225, 239, 265, 382
Sau3AI	GATC	2 cut(s)	289, 793
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	1 cut(s)	491
SfaNI	GCATC	7 cut(s)	12, 82, 185, 225, 415, 508, 526
SgrAI	CRCCGGYG	1 cut(s)	785
Sse9I	AATT	3 cut(s)	308, 312, 691
SspI	AATATT	1 cut(s)	527
SspMI	CTAG	3 cut(s)	65, 168, 627
TaaI	ACNGT	1 cut(s)	604
TaiI	ACGT	1 cut(s)	669
TaqI	TCGA	1 cut(s)	288
TasI	AATT	3 cut(s)	308, 312, 691
TatI	WGTACW	1 cut(s)	456
TauI	GCSGC	1 cut(s)	384
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	1 cut(s)	574
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	8 cut(s)	45, 95, 121, 148, 198, 224, 238, 264
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	2 cut(s)	502, 670
TspRI	CASTG	1 cut(s)	574
Tth111I	GACNNNGTC	1 cut(s)	342
VspI	ATTAAT	1 cut(s)	311
XceI	RCATGY	1 cut(s)	589
XmiI	GTMKAC	1 cut(s)	346
XspI	CTAG	3 cut(s)	65, 168, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.