Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001148

Physical Location & Seq

Genomic Coordinates Reverse (-)

46490677 .. 46492593

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTGGAAAAATCCCACAGTTGAAGAAAGCCAGAGCCTTGCAAGGGTAAAAGCTAAAGACATCATTGCTTGTGGTTTTGACGTAACAAGAACCTTGATCTTCTCTGATTTTGATTATGTTGGTGGTGCCTTCTACAAGAACATGGATAAGGTCGGAGAGTGTGTCACCTATAATAAGGTTGTTGGCATATTTGGTTTCACCAGAGAAGATCATATAGGAAAAGTTAGTTTTCCTTTTGTACAGGCAGTACCATCATTTCCAAGTTCATTTCCACATTTCTTCTCTGGCCAAGATAATCTTCGTCGTTTAATACCCTGTGCGAAATTGGCTTATTACCTTAAGAAACAGAGGAAGGGGCATTTGGTGGAGGTGATACTTCCAAAGTATTCAAGCCTGGACCTAGATGAAATTCAAGGCCTACAAGAGATGGAGGTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004830 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006436 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

146

Amino Acids

16.62

Weight (kDa)

6.83

Isoelectric Point (pI)

50.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04600 AT3G04600 AT3G04600
fragaria_vesca	FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_5g27321
malus_domestica	MD04G1236500.v1.1 MD12G1255800.v1.1
prunus_persica	Prupe.7G057000_v2.0.a1 Prupe.7G057800_v2.0.a1
pyrus_communis	pycom04g21040 pycom12g23440
rosa_chinensis	RchiOBHm_Chr3g0493481 RchiOBHm_Chr7g0219201 RchiOBHm_Chr7g0219221 RchiOBHm_Chr7g0223011
rosa_laevigata	RLG00000002003 RLG00000002302 RLG00000002303 RLG00000022713
rosa_multiflora	Rmu_sc0000868.1_g000014 Rmu_sc0006373.1_g000002 Rmu_sc0006514.1_g000024 Rmu_sc0007422.1_g000005 Rmu_sc0009785.1_g000024 Rmu_sc0039697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234440 Rroxscaffold_3G00236350 Rroxscaffold_3G00237890 Rroxscaffold_3G00237970 Rroxscaffold_3G00238030 Rroxscaffold_3G00238960 Rroxscaffold_3G00238970 Rroxscaffold_5G00377610 Rroxscaffold_6G00391570 Rroxscaffold_7G00199590 Rroxscaffold_7G00199600
rosa_rugosa	Rorug07G0177500 Rorug07G0177500 Rorug07G0212800
rosa_samantha	Rh3AG310200 Rh3BG346300 Rh3CG344200 Rh3DG345400 Rh7AG319000 Rh7AG326700 Rh7AG357900 Rh7BG310900 Rh7BG346100 Rh7CG376000 Rh7DG318100 Rh7DG318200 Rh7DG352800
rosa_wichuraiana	Rw3G027260 Rw7G027160 Rw7G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	408
AfaI	GTAC	2 cut(s)	240, 249
AfiI	CCNNNNNNNGG	1 cut(s)	43
AflII	CTTAAG	1 cut(s)	338
AgsI	TTSAA	3 cut(s)	23, 390, 413
AjnI	CCWGG	1 cut(s)	393
AjuI	GAANNNNNNNTTGG	4 cut(s)	282, 314, 344, 376
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
AoxI	GGCC	2 cut(s)	286, 415
ApoI	RAATTY	1 cut(s)	408
AspS9I	GGNCC	1 cut(s)	397
AsuHPI	GGTGA	3 cut(s)	157, 190, 382
AvaII	GGWCC	1 cut(s)	397
BalI	TGGCCA	1 cut(s)	288
BanI	GGYRCC	1 cut(s)	125
BccI	CCATC	2 cut(s)	259, 421
BciT130I	CCWGG	1 cut(s)	395
BfaI	CTAG	1 cut(s)	401
BfrI	CTTAAG	1 cut(s)	338
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	395
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	395
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMI	GCAATG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	288, 417
BshNI	GGYRCC	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	43
BsnI	GGCC	2 cut(s)	288, 417
Bsp1407I	TGTACA	1 cut(s)	238
Bsp143I	GATC	2 cut(s)	96, 208
BspANI	GGCC	2 cut(s)	288, 417
BspLI	GGNNCC	1 cut(s)	127
BspT107I	GGYRCC	1 cut(s)	125
BspTI	CTTAAG	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	63
BsrGI	TGTACA	1 cut(s)	238
BssMI	GATC	2 cut(s)	96, 208
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	1 cut(s)	19
BstAFI	CTTAAG	1 cut(s)	338
BstAUI	TGTACA	1 cut(s)	238
BstKTI	GATC	2 cut(s)	99, 211
BstMBI	GATC	2 cut(s)	96, 208
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	393
BsuRI	GGCC	2 cut(s)	288, 417
Cfr13I	GGNCC	1 cut(s)	397
Csp6I	GTAC	2 cut(s)	239, 248
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	7 cut(s)	30, 36, 53, 288, 329, 393, 417
CviKI_1	RGCY	7 cut(s)	30, 36, 53, 288, 329, 393, 417
CviQI	GTAC	2 cut(s)	239, 248
DpnI	GATC	2 cut(s)	98, 210
DpnII	GATC	2 cut(s)	96, 208
EaeI	YGGCCR	1 cut(s)	286
Eco147I	AGGCCT	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	393
FaeI	CATG	1 cut(s)	145
FaiI	YATR	6 cut(s)	117, 143, 171, 188, 213, 215
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FatI	CATG	1 cut(s)	141
FspBI	CTAG	1 cut(s)	401
HaeIII	GGCC	2 cut(s)	288, 417
Hin1II	CATG	1 cut(s)	145
HphI	GGTGA	3 cut(s)	157, 190, 382
Hpy188I	TCNGA	2 cut(s)	106, 155
Hpy99I	CGWCG	1 cut(s)	306
HpyAV	CCTTC	2 cut(s)	139, 346
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	96, 208
LpnPI	CCDG	7 cut(s)	44, 214, 227, 270, 328, 380, 407
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	82, 163
MalI	GATC	2 cut(s)	98, 210
MboI	GATC	2 cut(s)	96, 208
MboII	GAAGA	5 cut(s)	35, 91, 218, 271, 290
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	2 cut(s)	323, 408
MluNI	TGGCCA	1 cut(s)	288
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	3 cut(s)	342, 361, 424
Mox20I	TGGCCA	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	2 cut(s)	308, 339
Msp20I	TGGCCA	1 cut(s)	288
MspCI	CTTAAG	1 cut(s)	338
MspR9I	CCNGG	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	326
NdeII	GATC	2 cut(s)	96, 208
NlaIII	CATG	1 cut(s)	145
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	163
PceI	AGGCCT	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	397
RsaI	GTAC	2 cut(s)	240, 249
RsaNI	GTAC	2 cut(s)	239, 248
SaqAI	TTAA	2 cut(s)	308, 339
Sau3AI	GATC	2 cut(s)	96, 208
Sau96I	GGNCC	1 cut(s)	397
ScrFI	CCNGG	1 cut(s)	395
SinI	GGWCC	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	2 cut(s)	323, 408
SseBI	AGGCCT	1 cut(s)	417
SspMI	CTAG	1 cut(s)	401
StuI	AGGCCT	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	19
TaiI	ACGT	1 cut(s)	84
TasI	AATT	2 cut(s)	323, 408
TatI	WGTACW	1 cut(s)	238
Tru1I	TTAA	2 cut(s)	308, 339
Tru9I	TTAA	2 cut(s)	308, 339
TseFI	GTSAC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	2 cut(s)	255, 420
Vha464I	CTTAAG	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	397
XapI	RAATTY	1 cut(s)	408
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.