RchiOBHm_Chr3g0493481

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
40649179 .. 40656561
7383 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45623

Sequence Viewer

Length: 1254 bp
ATGAAGCACAAACAACTCCTGGACCTGGACTCACAAGAAAATCAAAATATAGGAGCAATGGAGATAAAGGAAAACGGAGAAGAAGAGCAGCAGATTGTGAATCCATGGAAGGTGGAGGCCAAAGAAGGCGGCAAAATCGACTATGATAAGCTCATAGATCAGTTCGGTTGCCAGAGGATCAATCAATCTCTCGTCAAGCGTGTCCGCCGTCTCACCTCACGTGCTCCGCACGTTTTCCTCCGTCGCGACATCTTCTTCGCTCACCGGGACTTCAATGAGATTCTGGATGCTTATGAGAGAGGAGAGAAGTTCTATTTGTACACAGGAAGAGGGCCTTCCTCAGAGGCTTTGCATTTGGGGCATCTCATCCCCTTCATGTTCACCAAATATTTGCAAGATGCCTTTAAGGTCCCTCTCGTTATACAACTTACCGACGATGAGAAATGTATGTGGAAAAATCTCACAGTTGAAGAAAGCCAGAGACTTGCAAGGGAAAATGCTAAAGACATCATTGCTTGTGGTTTTGACATAACAAGAACCTTTATCTTCTCTGATTTTGATTATGTTGGTGGTGCCTTCTACAAGAACATGGTGAAGGTCGGAAAGTGTGTCACCTATAATAAGGTTGTTGGCATATTTGGTTTCACCGGTGAAGATCATATAGGAAAAGTTAGTTTTCCACCTGTACAGGCGGTACCATCATTTCCAAGTTCATTTCCACATCTCTTCTCTGGCCAAGATAATCTTCGTTGTTTAATACCCTGTGCAATTGACCAGGATCCTTATTTTAGAATGACCCGAGATGTTGCTCCACGCATTGGATATCACAAGCCTGCTTTAATTGAGTCTCTATTCTTCCCTGCCCTTCAGGGAGAAACAGGAAAAATGTCGGCTAGTGATCCAAATTCTGCCATCTACGTAACTGATTCTGCAAAGGATATTAAGAGCAAGATAAACAAGTTTGCATTTTCAGGGGGACAAGATACAATAGAGAAACACAGAGAGTTGGGAGCAGATCTCGAGGTAGACATTCCCTATAAATATCTGAAATTTTTTCTGGATGATGACATCGAGCTTGCTTATATAGGAAAGGAGTATGGTGCAGGTCGAATGTTGACAGGGGAAGTGAAGCAGAGGCTCATTCAAGTTTTGACAGAAATTGTGGAGAGACATCGTAGGGCTAGAGCTGCTGTCACTGATGAGATGGTGGACGCATTTATGGCAGTGAGGCCCCTCCCAAACATGTTCGACTAA

Protein Analysis

417

Amino Acids

47.68

Weight (kDa)

6.11

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1b PF00579 101 - 387 1.1e-19 tRNA synthetases class I (W and Y)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1094
Acc65I GGTACC 1 cut(s) 694
AccB1I GGYRCC 2 cut(s) 572, 694
AccB7I CCANNNNNTGG 1 cut(s) 818
AccI GTMKAC 1 cut(s) 1026
AccII CGCG 1 cut(s) 246
AciI CCGC 4 cut(s) 129, 205, 227, 692
AclWI GGATC 4 cut(s) 185, 773, 786, 893
AcoI YGGCCR 1 cut(s) 733
AcsI RAATTY 2 cut(s) 904, 1049
AcuI CTGAAG 1 cut(s) 851
AcvI CACGTG 1 cut(s) 221
AfaI GTAC 3 cut(s) 320, 687, 696
AfiI CCNNNNNNNGG 2 cut(s) 25, 818
AflIII ACRYGT 1 cut(s) 1242
AgeI ACCGGT 1 cut(s) 647
AgsI TTSAA 3 cut(s) 274, 470, 1145
AjnI CCWGG 3 cut(s) 18, 24, 774
AjuI GAANNNNNNNTTGG 2 cut(s) 729, 761
AluBI AGCT 3 cut(s) 151, 1075, 1187
AluI AGCT 3 cut(s) 151, 1075, 1187
Alw21I GWGCWC 1 cut(s) 226
Alw26I GTCTC 4 cut(s) 215, 475, 852, 1162
AlwI GGATC 4 cut(s) 185, 773, 786, 893
Ama87I CYCGRG 2 cut(s) 798, 1019
AoxI GGCC 4 cut(s) 117, 332, 733, 1229
ApeKI GCWGC 2 cut(s) 88, 1187
ApoI RAATTY 2 cut(s) 904, 1049
ArsI GACNNNNNNTTYG 2 cut(s) 239, 271
AsiGI ACCGGT 1 cut(s) 647
Asp718I GGTACC 1 cut(s) 694
AspS9I GGNCC 4 cut(s) 22, 332, 409, 1230
AsuC2I CCSGG 1 cut(s) 266
AsuHPI GGTGA 7 cut(s) 205, 254, 373, 604, 604, 637, 662
AvaI CYCGRG 2 cut(s) 798, 1019
AvaII GGWCC 2 cut(s) 22, 409
BalI TGGCCA 1 cut(s) 735
BamHI GGATCC 1 cut(s) 778
BanI GGYRCC 2 cut(s) 572, 694
BbrPI CACGTG 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 226
BbvI GCAGC 2 cut(s) 100, 1174
BccI CCATC 3 cut(s) 706, 920, 1198
BceAI ACGGC 1 cut(s) 192
BciT130I CCWGG 3 cut(s) 20, 26, 776
BcnI CCSGG 1 cut(s) 266
BcoDI GTCTC 4 cut(s) 215, 475, 852, 1162
BfaI CTAG 2 cut(s) 894, 1182
BfuAI ACCTGC 1 cut(s) 1094
BglII AGATCT 1 cut(s) 1015
BisI GCNGC 3 cut(s) 89, 130, 1188
BlsI GCNGC 3 cut(s) 90, 131, 1189
Bme1390I CCNGG 4 cut(s) 20, 26, 266, 776
Bme18I GGWCC 2 cut(s) 22, 409
BmeT110I CYCGRG 2 cut(s) 798, 1019
BmgT120I GGNCC 4 cut(s) 22, 332, 409, 1230
BmiI GGNNCC 5 cut(s) 411, 574, 696, 780, 1232
BmrFI CCNGG 4 cut(s) 20, 26, 266, 776
BmsI GCATC 3 cut(s) 277, 370, 388
BplI GAGNNNNNCTC 2 cut(s) 1002, 1034
BpuMI CCSGG 1 cut(s) 266
BsaAI YACGTR 2 cut(s) 221, 919
BsaJI CCNNGG 1 cut(s) 104
BsaWI WCCGGW 1 cut(s) 647
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 818
Bse118I RCCGGY 1 cut(s) 647
Bse3DI GCAATG 2 cut(s) 63, 510
BseBI CCWGG 3 cut(s) 20, 26, 776
BseDI CCNNGG 1 cut(s) 104
BseGI GGATG 3 cut(s) 292, 366, 1066
BseLI CCNNNNNNNGG 2 cut(s) 25, 818
BseMI GCAATG 2 cut(s) 63, 510
BseMII CTCAG 1 cut(s) 354
BseRI GAGGAG 1 cut(s) 315
BseXI GCAGC 2 cut(s) 100, 1174
BsgI GTGCAG 1 cut(s) 1122
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 4 cut(s) 119, 334, 735, 1231
BshNI GGYRCC 2 cut(s) 572, 694
BshTI ACCGGT 1 cut(s) 647
BsiHKAI GWGCWC 1 cut(s) 226
BsiHKCI CYCGRG 2 cut(s) 798, 1019
BsiSI CCGG 2 cut(s) 265, 648
BslFI GGGAC 3 cut(s) 281, 395, 990
BslI CCNNNNNNNGG 2 cut(s) 25, 818
BsmAI GTCTC 4 cut(s) 215, 475, 852, 1162
BsmBI CGTCTC 1 cut(s) 215
BsmFI GGGAC 3 cut(s) 281, 395, 990
BsnI GGCC 4 cut(s) 119, 334, 735, 1231
BsoBI CYCGRG 2 cut(s) 798, 1019
Bsp1286I GDGCHC 1 cut(s) 226
Bsp1407I TGTACA 2 cut(s) 318, 685
Bsp143I GATC 6 cut(s) 157, 177, 655, 778, 898, 1015
Bsp19I CCATGG 1 cut(s) 104
Bsp68I TCGCGA 1 cut(s) 246
BspACI CCGC 4 cut(s) 129, 205, 227, 692
BspANI GGCC 4 cut(s) 119, 334, 735, 1231
BspCNI CTCAG 1 cut(s) 353
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 5 cut(s) 411, 574, 696, 780, 1232
BspMI ACCTGC 1 cut(s) 1094
BspPI GGATC 4 cut(s) 185, 773, 786, 893
BspQI GCTCTTC 1 cut(s) 78
BspT107I GGYRCC 2 cut(s) 572, 694
BsrDI GCAATG 2 cut(s) 63, 510
BsrFI RCCGGY 1 cut(s) 647
BsrGI TGTACA 2 cut(s) 318, 685
BssAI RCCGGY 1 cut(s) 647
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 6 cut(s) 157, 177, 655, 778, 898, 1015
BssT1I CCWWGG 1 cut(s) 104
Bst2UI CCWGG 3 cut(s) 20, 26, 776
Bst4CI ACNGT 1 cut(s) 466
Bst6I CTCTTC 3 cut(s) 78, 322, 731
BstAUI TGTACA 2 cut(s) 318, 685
BstBAI YACGTR 2 cut(s) 221, 919
BstC8I GCNNGC 2 cut(s) 834, 1077
BstDEI CTNAG 1 cut(s) 340
BstDSI CCRYGG 1 cut(s) 104
BstF5I GGATG 3 cut(s) 292, 366, 1066
BstFNI CGCG 1 cut(s) 246
BstKTI GATC 6 cut(s) 160, 180, 658, 781, 901, 1018
BstMAI GTCTC 4 cut(s) 215, 475, 852, 1162
BstMBI GATC 6 cut(s) 157, 177, 655, 778, 898, 1015
BstMWI GCNNNNNNNGC 3 cut(s) 358, 1187, 1220
BstNI CCWGG 3 cut(s) 20, 26, 776
BstNSI RCATGY 1 cut(s) 1246
BstSCI CCNGG 4 cut(s) 18, 24, 264, 774
BstSNI TACGTA 1 cut(s) 919
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 100, 1174
BstX2I RGATCY 2 cut(s) 778, 1015
BstYI RGATCY 2 cut(s) 778, 1015
BsuRI GGCC 4 cut(s) 119, 334, 735, 1231
BtgI CCRYGG 1 cut(s) 104
BtsCI GGATG 3 cut(s) 292, 366, 1066
BtsI GCAGTG 1 cut(s) 1230
BtsIMutI CAGTG 2 cut(s) 1194, 1230
BtuMI TCGCGA 1 cut(s) 246
BveI ACCTGC 1 cut(s) 1094
Cac8I GCNNGC 2 cut(s) 834, 1077
Cfr10I RCCGGY 1 cut(s) 647
Cfr13I GGNCC 4 cut(s) 22, 332, 409, 1230
CseI GACGC 1 cut(s) 1220
Csp6I GTAC 3 cut(s) 319, 686, 695
CspAI ACCGGT 1 cut(s) 647
CviAII CATG 4 cut(s) 105, 376, 589, 1243
CviQI GTAC 3 cut(s) 319, 686, 695
DdeI CTNAG 1 cut(s) 340
DpnI GATC 6 cut(s) 159, 179, 657, 780, 900, 1017
DpnII GATC 6 cut(s) 157, 177, 655, 778, 898, 1015
EaeI YGGCCR 1 cut(s) 733
Eam1104I CTCTTC 3 cut(s) 78, 322, 731
EarI CTCTTC 3 cut(s) 78, 322, 731
EciI GGCGGA 1 cut(s) 194
Eco105I TACGTA 1 cut(s) 919
Eco130I CCWWGG 1 cut(s) 104
Eco32I GATATC 1 cut(s) 824
Eco47I GGWCC 2 cut(s) 22, 409
Eco57I CTGAAG 1 cut(s) 851
Eco72I CACGTG 1 cut(s) 221
Eco88I CYCGRG 2 cut(s) 798, 1019
EcoO109I RGGNCCY 3 cut(s) 332, 409, 1230
EcoRII CCWGG 3 cut(s) 18, 24, 774
EcoRV GATATC 1 cut(s) 824
EcoT14I CCWWGG 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 104
Esp3I CGTCTC 1 cut(s) 215
FaeI CATG 4 cut(s) 108, 379, 592, 1246
FalI AAGNNNNNCTT 4 cut(s) 319, 351, 729, 761
FaqI GGGAC 3 cut(s) 281, 395, 990
FatI CATG 4 cut(s) 104, 375, 588, 1242
FblI GTMKAC 1 cut(s) 1026
Fnu4HI GCNGC 3 cut(s) 89, 130, 1188
FokI GGATG 3 cut(s) 299, 353, 1073
Fsp4HI GCNGC 3 cut(s) 89, 130, 1188
FspBI CTAG 2 cut(s) 894, 1182
GluI GCNGC 3 cut(s) 89, 130, 1188
HaeIII GGCC 4 cut(s) 119, 334, 735, 1231
HapII CCGG 2 cut(s) 265, 648
HgaI GACGC 1 cut(s) 1220
Hin1II CATG 4 cut(s) 108, 379, 592, 1246
HincII GTYRAC 1 cut(s) 1116
HindII GTYRAC 1 cut(s) 1116
HinfI GANTC 5 cut(s) 29, 100, 280, 845, 926
HpaII CCGG 2 cut(s) 265, 648
HphI GGTGA 7 cut(s) 205, 254, 373, 604, 604, 637, 662
Hpy166II GTNNAC 5 cut(s) 321, 381, 1027, 1116, 1210
Hpy188I TCNGA 4 cut(s) 343, 553, 602, 1047
Hpy188III TCNNGA 4 cut(s) 245, 284, 1019, 1058
Hpy8I GTNNAC 5 cut(s) 321, 381, 1027, 1116, 1210
Hpy99I CGWCG 2 cut(s) 246, 437
HpyAV CCTTC 7 cut(s) 103, 119, 345, 382, 586, 589, 875
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4IV ACGT 3 cut(s) 220, 231, 918
HpyCH4V TGCA 7 cut(s) 352, 394, 488, 767, 932, 965, 1103
HpyF10VI GCNNNNNNNGC 3 cut(s) 358, 1187, 1220
HpyF3I CTNAG 1 cut(s) 340
HpySE526I ACGT 3 cut(s) 220, 231, 918
Hsp92II CATG 4 cut(s) 108, 379, 592, 1246
KpnI GGTACC 1 cut(s) 698
Kzo9I GATC 6 cut(s) 157, 177, 655, 778, 898, 1015
LguI GCTCTTC 1 cut(s) 78
LmnI GCTCC 4 cut(s) 53, 229, 814, 1010
Lsp1109I GCAGC 2 cut(s) 100, 1174
LweI GCATC 3 cut(s) 277, 370, 388
MaeI CTAG 2 cut(s) 894, 1182
MaeII ACGT 3 cut(s) 220, 231, 918
MaeIII GTNAC 3 cut(s) 610, 919, 1192
MalI GATC 6 cut(s) 159, 179, 657, 780, 900, 1017
MboI GATC 6 cut(s) 157, 177, 655, 778, 898, 1015
MfeI CAATTG 1 cut(s) 768
MflI RGATCY 2 cut(s) 778, 1015
MhlI GDGCHC 1 cut(s) 226
MlsI TGGCCA 1 cut(s) 735
MluCI AATT 5 cut(s) 768, 840, 904, 1049, 1158
MluNI TGGCCA 1 cut(s) 735
MlyI GAGTC 2 cut(s) 23, 854
MmeI TCCRAC 1 cut(s) 580
Mox20I TGGCCA 1 cut(s) 735
MscI TGGCCA 1 cut(s) 735
MseI TTAA 4 cut(s) 405, 755, 839, 942
Msp20I TGGCCA 1 cut(s) 735
MspI CCGG 2 cut(s) 265, 648
MspR9I CCNGG 4 cut(s) 20, 26, 266, 776
MunI CAATTG 1 cut(s) 768
MvaI CCWGG 3 cut(s) 20, 26, 776
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 3 cut(s) 358, 1187, 1220
NciI CCSGG 1 cut(s) 266
NcoI CCATGG 1 cut(s) 104
NdeII GATC 6 cut(s) 157, 177, 655, 778, 898, 1015
NlaIII CATG 4 cut(s) 108, 379, 592, 1246
NlaIV GGNNCC 5 cut(s) 411, 574, 696, 780, 1232
NmuCI GTSAC 2 cut(s) 610, 1192
NruI TCGCGA 1 cut(s) 246
NspI RCATGY 1 cut(s) 1246
PaeR7I CTCGAG 1 cut(s) 1019
PciI ACATGT 1 cut(s) 1242
PciSI GCTCTTC 1 cut(s) 78
PfeI GAWTC 3 cut(s) 100, 280, 926
PflMI CCANNNNNTGG 1 cut(s) 818
PfoI TCCNGGA 1 cut(s) 18
PinAI ACCGGT 1 cut(s) 647
PkrI GCNGC 3 cut(s) 90, 131, 1189
PleI GAGTC 2 cut(s) 23, 853
PmaCI CACGTG 1 cut(s) 221
PmlI CACGTG 1 cut(s) 221
PpsI GAGTC 2 cut(s) 23, 853
Ppu21I YACGTR 2 cut(s) 221, 919
PpuMI RGGWCCY 1 cut(s) 409
PscI ACATGT 1 cut(s) 1242
Psp5II RGGWCCY 1 cut(s) 409
Psp6I CCWGG 3 cut(s) 18, 24, 774
PspCI CACGTG 1 cut(s) 221
PspGI CCWGG 3 cut(s) 18, 24, 774
PspN4I GGNNCC 5 cut(s) 411, 574, 696, 780, 1232
PspPI GGNCC 4 cut(s) 22, 332, 409, 1230
PspPPI RGGWCCY 1 cut(s) 409
PsuI RGATCY 2 cut(s) 778, 1015
RruI TCGCGA 1 cut(s) 246
RsaI GTAC 3 cut(s) 320, 687, 696
RsaNI GTAC 3 cut(s) 319, 686, 695
SapI GCTCTTC 1 cut(s) 78
SaqAI TTAA 4 cut(s) 405, 755, 839, 942
SatI GCNGC 3 cut(s) 89, 130, 1188
Sau3AI GATC 6 cut(s) 157, 177, 655, 778, 898, 1015
Sau96I GGNCC 4 cut(s) 22, 332, 409, 1230
SchI GAGTC 2 cut(s) 23, 854
ScrFI CCNGG 4 cut(s) 20, 26, 266, 776
SduI GDGCHC 1 cut(s) 226
SfaNI GCATC 3 cut(s) 277, 370, 388
Sfr274I CTCGAG 1 cut(s) 1019
SgrAI CRCCGGYG 1 cut(s) 647
SinI GGWCC 2 cut(s) 22, 409
SlaI CTCGAG 1 cut(s) 1019
SmlI CTYRAG 1 cut(s) 1019
SmoI CTYRAG 1 cut(s) 1019
SnaBI TACGTA 1 cut(s) 919
Sse9I AATT 5 cut(s) 768, 840, 904, 1049, 1158
SsiI CCGC 4 cut(s) 129, 205, 227, 692
SspI AATATT 1 cut(s) 389
SspMI CTAG 2 cut(s) 894, 1182
StyD4I CCNGG 4 cut(s) 18, 24, 264, 774
StyI CCWWGG 1 cut(s) 104
TaaI ACNGT 1 cut(s) 466
TaiI ACGT 3 cut(s) 223, 234, 921
TaqI TCGA 5 cut(s) 138, 1020, 1071, 1108, 1248
TasI AATT 5 cut(s) 768, 840, 904, 1049, 1158
TatI WGTACW 2 cut(s) 318, 685
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 3 cut(s) 100, 280, 926
Tru1I TTAA 4 cut(s) 405, 755, 839, 942
Tru9I TTAA 4 cut(s) 405, 755, 839, 942
TscAI CASTG 2 cut(s) 1201, 1230
TseFI GTSAC 2 cut(s) 610, 1192
TseI GCWGC 2 cut(s) 88, 1187
Tsp45I GTSAC 2 cut(s) 610, 1192
TspDTI ATGAA 3 cut(s) 17, 364, 702
TspGWI ACGGA 2 cut(s) 90, 230
TspRI CASTG 2 cut(s) 1201, 1230
Van91I CCANNNNNTGG 1 cut(s) 818
VpaK11BI GGWCC 2 cut(s) 22, 409
XapI RAATTY 2 cut(s) 904, 1049
XceI RCATGY 1 cut(s) 1246
XhoI CTCGAG 1 cut(s) 1019
XmiI GTMKAC 1 cut(s) 1026
XspI CTAG 2 cut(s) 894, 1182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.