Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001148

Physical Location & Seq

Genomic Coordinates Forward (+)

27394845 .. 27398290

Gene Structure 3446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00238960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGATGATGTCCCGAGGGCATGTCGTTGGACAGGGCATAACTCTCTCAATGCATTCTAGCTTTTTCTACTCTCCTCCTCCTTCTTCTTCTTTTGAGCCTGAGCAATCAGACAGCAACACACCCAGAGCAATGGAGATAAAGGAAAATGGAGAAGAAGAGAAGCAGATTGTGAATCCTTGGAAGGTGGAGGCCAAAGAAGGCGGCAAAATTGACTACGATAAGCTCATAGATCAGTTCGGTTGCCAGAGGATCGATCAGTCTCTTGTCGACCATGTCCGCCGTCTCACCTCACGTACTCCGCACGTTTTCCTCAGTCGTGACGTCTTCTTTGCTCACCGGGACTTTAATGAGATTCTGGATGCTTATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004830 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006436 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

123

Amino Acids

14.18

Weight (kDa)

5.33

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04600 AT3G04600 AT3G04600
fragaria_vesca	FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_4g11950 FvH4_5g27321
malus_domestica	MD04G1236500.v1.1 MD12G1255800.v1.1
prunus_persica	Prupe.7G057000_v2.0.a1 Prupe.7G057800_v2.0.a1
pyrus_communis	pycom04g21040 pycom12g23440
rosa_chinensis	RchiOBHm_Chr3g0493481 RchiOBHm_Chr7g0219201 RchiOBHm_Chr7g0219221 RchiOBHm_Chr7g0223011
rosa_laevigata	RLG00000002003 RLG00000002302 RLG00000002303 RLG00000022713
rosa_multiflora	Rmu_sc0000868.1_g000014 Rmu_sc0006373.1_g000002 Rmu_sc0006514.1_g000024 Rmu_sc0007422.1_g000005 Rmu_sc0009785.1_g000024 Rmu_sc0039697.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234440 Rroxscaffold_3G00236350 Rroxscaffold_3G00237890 Rroxscaffold_3G00237970 Rroxscaffold_3G00238030 Rroxscaffold_3G00238960 Rroxscaffold_3G00238970 Rroxscaffold_5G00377610 Rroxscaffold_6G00391570 Rroxscaffold_7G00199590 Rroxscaffold_7G00199600
rosa_rugosa	Rorug07G0177500 Rorug07G0177500 Rorug07G0212800
rosa_samantha	Rh3AG310200 Rh3BG346300 Rh3CG344200 Rh3DG345400 Rh7AG319000 Rh7AG326700 Rh7AG357900 Rh7BG310900 Rh7BG346100 Rh7CG376000 Rh7DG318100 Rh7DG318200 Rh7DG352800
rosa_wichuraiana	Rw3G027260 Rw7G027160 Rw7G030440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	3 cut(s)	201, 277, 299
AclWI	GGATC	1 cut(s)	257
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	1 cut(s)	295
AluBI	AGCT	2 cut(s)	60, 223
AluI	AGCT	2 cut(s)	60, 223
Alw26I	GTCTC	2 cut(s)	264, 287
AlwI	GGATC	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	12
AoxI	GGCC	1 cut(s)	189
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	2 cut(s)	277, 326
AvaI	CYCGRG	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	316
BceAI	ACGGC	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	2 cut(s)	264, 287
BfaI	CTAG	1 cut(s)	57
BisI	GCNGC	1 cut(s)	202
BlsI	GCNGC	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	338
BmeT110I	CYCGRG	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	316
Bpu10I	CCTNAGC	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	338
Bsa29I	ATCGAT	1 cut(s)	252
BsaAI	YACGTR	1 cut(s)	293
BsaHI	GRCGYC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	13, 176
Bse3DI	GCAATG	1 cut(s)	135
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	13, 176
BseGI	GGATG	1 cut(s)	364
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	2 cut(s)	90, 325
BseRI	GAGGAG	2 cut(s)	63, 66
BshFI	GGCC	1 cut(s)	191
BshVI	ATCGAT	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	337
BslFI	GGGAC	1 cut(s)	353
BsmAI	GTCTC	2 cut(s)	264, 287
BsmBI	CGTCTC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	353
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	191
BsoBI	CYCGRG	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	229, 249, 253
BspACI	CCGC	3 cut(s)	201, 277, 299
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	2 cut(s)	91, 324
BspDI	ATCGAT	1 cut(s)	252
BspPI	GGATC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	135
BssECI	CCNNGG	2 cut(s)	13, 176
BssMI	GATC	3 cut(s)	229, 249, 253
BssNI	GRCGYC	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	321
BstBAI	YACGTR	1 cut(s)	293
BstDEI	CTNAG	2 cut(s)	99, 311
BstF5I	GGATG	1 cut(s)	364
BstKTI	GATC	3 cut(s)	232, 252, 256
BstMAI	GTCTC	2 cut(s)	264, 287
BstMBI	GATC	3 cut(s)	229, 249, 253
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	336
BstV2I	GAAGAC	1 cut(s)	316
BstXI	CCANNNNNNTGG	1 cut(s)	130
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	191
BsuTUI	ATCGAT	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	364
ClaI	ATCGAT	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	2 cut(s)	20, 272
CviJI	RGCY	4 cut(s)	60, 97, 191, 223
CviKI_1	RGCY	4 cut(s)	60, 97, 191, 223
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	2 cut(s)	99, 311
DpnI	GATC	3 cut(s)	231, 251, 255
DpnII	GATC	3 cut(s)	229, 249, 253
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	266
Eco130I	CCWWGG	1 cut(s)	176
Eco88I	CYCGRG	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	176
EcoT22I	ATGCAT	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	176
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	2 cut(s)	23, 275
FaiI	YATR	5 cut(s)	21, 38, 227, 273, 366
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	2 cut(s)	19, 271
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	202
Fsp4HI	GCNGC	1 cut(s)	202
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	1 cut(s)	337
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	2 cut(s)	23, 275
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	2 cut(s)	172, 352
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	2 cut(s)	277, 326
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	3 cut(s)	12, 317, 356
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	3 cut(s)	90, 175, 191
HpyCH4IV	ACGT	3 cut(s)	292, 303, 321
HpyCH4V	TGCA	1 cut(s)	52
HpyF3I	CTNAG	2 cut(s)	99, 311
HpySE526I	ACGT	3 cut(s)	292, 303, 321
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	2 cut(s)	23, 275
Kzo9I	GATC	3 cut(s)	229, 249, 253
LpnPI	CCDG	6 cut(s)	17, 111, 136, 257, 341, 350
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	3 cut(s)	292, 303, 321
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	3 cut(s)	231, 251, 255
MboI	GATC	3 cut(s)	229, 249, 253
MboII	GAAGA	5 cut(s)	75, 78, 164, 167, 316
MluCI	AATT	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	7 cut(s)	8, 84, 87, 181, 240, 298, 320
Mph1103I	ATGCAT	1 cut(s)	54
MseI	TTAA	1 cut(s)	345
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	1 cut(s)	338
Mva1269I	GAATGC	1 cut(s)	52
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	3 cut(s)	229, 249, 253
NlaIII	CATG	2 cut(s)	23, 275
NmuCI	GTSAC	1 cut(s)	317
NsiI	ATGCAT	1 cut(s)	54
NspI	RCATGY	1 cut(s)	23
PctI	GAATGC	1 cut(s)	52
PfeI	GAWTC	2 cut(s)	172, 352
PflFI	GACNNNGTC	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	203
Ppu21I	YACGTR	1 cut(s)	293
PsyI	GACNNNGTC	1 cut(s)	272
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SalI	GTCGAC	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	1 cut(s)	202
Sau3AI	GATC	3 cut(s)	229, 249, 253
ScrFI	CCNGG	1 cut(s)	338
SetI	ASST	7 cut(s)	62, 186, 225, 290, 295, 306, 324
SfaNI	GCATC	1 cut(s)	349
Sse9I	AATT	1 cut(s)	207
SsiI	CCGC	3 cut(s)	201, 277, 299
SspMI	CTAG	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	176
TaiI	ACGT	3 cut(s)	295, 306, 324
TaqI	TCGA	2 cut(s)	252, 267
TasI	AATT	1 cut(s)	207
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	2 cut(s)	172, 352
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TseFI	GTSAC	1 cut(s)	317
Tsp45I	GTSAC	1 cut(s)	317
Tth111I	GACNNNGTC	1 cut(s)	272
XceI	RCATGY	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	1 cut(s)	57
ZraI	GACGTC	1 cut(s)	322
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.