Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Reverse (-)

3844772 .. 3847586

Gene Structure 2815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCAGACAAGCTCGTAGCTGGCAAGCATCTTCGTTACATTCTGAATTTGATGGCAGAAAAGAAAAAAGAGAGTTTTGAGTCTGTGGTTATGGATCATCTGAGAATGAATGGTGCATATTGGGGACTAACCACACTGGCTTTACTCGACAAGCTTGGTTCTGTTTCCGAAGATGAAGTTGTGTCATGGGTCATGACCTGCCAGCATGAGTCTGGTGGCTTTGCCGGTAATACTGGCCATGATCCGCATGTTTTGTATACACTCAGTGCTGTACAAATCTTGGCCCTCTTCGACAAACTCAACATTCTTGATGTTGAAAAAGTTTCAAATTATATTGCTGGGTTACAGAATGAAGATGGATCCTTCTCAGGAGATATATGGGGCGAAGTAGATACAAGGTTTTCTTACATAGCTATATGCTGCCTCTCAATATTAAAATGTCTTGATAAAATCAATGTGAAGAAGGCTGTTGATTACATTGTGAGCTGCAAAAACCTGGATGGTGGTTTTGGGTGCTCACCTGGAGCGGAGTCTCATGCAGGACAGATTTTCTGTTGTGTGGGTGCTCTTGCTATCACCGGGAATCTCCATCGTGTTGATAAGGACTTACTTGGATGGTGGTTATGTGAAAGACAAGACTACGAGTCTGGAGGTTTAAATGGACGACCTGAGAAACTCCCTGATGTTTGCTATTCTTGGTGGGTCTTATCCAGCTTAATCATGATCGATAGAGTTCACTGGATCGAGAAAGCAAAGCTTGTCAAGTTTATCTTGGACTCTCAGGACATGGATAACGGAGGCATCTCAGATAGACCCAGCTATACTGTTGATATCTTCCACACCTACTTTGGAGTTGCGGGGCTCTCTCTTCTCGAGTATCCTGGAGTCAAAACAATTGATCCTGCCTACGCTTTGCCTGTCCATGTCATCAACCGGATTCTCTTCACCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

317

Amino Acids

35.19

Weight (kDa)

5.45

Isoelectric Point (pI)

24.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	8 - 304	3.5e-100	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	206
AccBSI	CCGCTC	1 cut(s)	527
AccI	GTMKAC	1 cut(s)	257
AciI	CCGC	3 cut(s)	245, 527, 857
AclWI	GGATC	6 cut(s)	102, 236, 354, 367, 749, 893
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	46
AdeI	CACNNNGTG	1 cut(s)	266
AfaI	GTAC	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	317, 327
AhdI	GACNNNNNGTC	1 cut(s)	643
AjnI	CCWGG	3 cut(s)	495, 520, 880
AluBI	AGCT	8 cut(s)	13, 20, 154, 413, 486, 714, 757, 819
AluI	AGCT	8 cut(s)	13, 20, 154, 413, 486, 714, 757, 819
Alw21I	GWGCWC	2 cut(s)	518, 568
Alw26I	GTCTC	1 cut(s)	537
AlwI	GGATC	6 cut(s)	102, 236, 354, 367, 749, 893
Ama87I	CYCGRG	1 cut(s)	872
AoxI	GGCC	2 cut(s)	235, 282
ApeKI	GCWGC	2 cut(s)	420, 486
ApoI	RAATTY	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	283
AsuC2I	CCSGG	1 cut(s)	580
AsuHPI	GGTGA	3 cut(s)	510, 568, 937
AvaI	CYCGRG	1 cut(s)	872
BalI	TGGCCA	1 cut(s)	237
BamHI	GGATCC	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	864
Bbv12I	GWGCWC	2 cut(s)	518, 568
BbvI	GCAGC	2 cut(s)	407, 473
BccI	CCATC	5 cut(s)	46, 350, 494, 597, 609
BciT130I	CCWGG	3 cut(s)	497, 522, 882
BciVI	GTATCC	1 cut(s)	888
BcnI	CCSGG	1 cut(s)	580
BcoDI	GTCTC	1 cut(s)	537
BfuAI	ACCTGC	1 cut(s)	206
BfuI	GTATCC	1 cut(s)	888
BisI	GCNGC	2 cut(s)	421, 487
BlsI	GCNGC	2 cut(s)	422, 488
Bme1390I	CCNGG	4 cut(s)	497, 522, 580, 882
BmeRI	GACNNNNNGTC	1 cut(s)	643
BmeT110I	CYCGRG	1 cut(s)	872
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	361
BmrFI	CCNGG	4 cut(s)	497, 522, 580, 882
BmsI	GCATC	2 cut(s)	37, 810
BpmI	CTGGAG	3 cut(s)	543, 669, 903
BpuMI	CCSGG	1 cut(s)	580
Bsa29I	ATCGAT	1 cut(s)	726
BsaWI	WCCGGW	1 cut(s)	933
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	3 cut(s)	141, 238, 743
BseBI	CCWGG	3 cut(s)	497, 522, 882
BseCI	ATCGAT	1 cut(s)	726
BseGI	GGATG	2 cut(s)	505, 620
BseMII	CTCAG	6 cut(s)	92, 277, 381, 660, 794, 819
BseNI	ACTGG	3 cut(s)	141, 238, 743
BseXI	GCAGC	2 cut(s)	407, 473
BseYI	CCCAGC	2 cut(s)	338, 815
BshFI	GGCC	2 cut(s)	237, 284
BshVI	ATCGAT	1 cut(s)	726
BsiHKAI	GWGCWC	2 cut(s)	518, 568
BsiHKCI	CYCGRG	1 cut(s)	872
BsiSI	CCGG	3 cut(s)	225, 579, 934
BslFI	GGGAC	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	537
BsmFI	GGGAC	1 cut(s)	138
BsnI	GGCC	2 cut(s)	237, 284
BsoBI	CYCGRG	1 cut(s)	872
Bsp1286I	GDGCHC	3 cut(s)	518, 568, 864
Bsp1407I	TGTACA	1 cut(s)	271
Bsp143I	GATC	6 cut(s)	94, 241, 359, 723, 741, 898
BspACI	CCGC	3 cut(s)	245, 527, 857
BspANI	GGCC	2 cut(s)	237, 284
BspCNI	CTCAG	6 cut(s)	93, 276, 380, 661, 793, 818
BspDI	ATCGAT	1 cut(s)	726
BspHI	TCATGA	2 cut(s)	192, 720
BspLI	GGNNCC	1 cut(s)	361
BspMI	ACCTGC	1 cut(s)	206
BspPI	GGATC	6 cut(s)	102, 236, 354, 367, 749, 893
BsrBI	CCGCTC	1 cut(s)	527
BsrFI	RCCGGY	1 cut(s)	224
BsrGI	TGTACA	1 cut(s)	271
BsrI	ACTGG	3 cut(s)	141, 238, 743
BssAI	RCCGGY	1 cut(s)	224
BssMI	GATC	6 cut(s)	94, 241, 359, 723, 741, 898
BssNAI	GTATAC	1 cut(s)	258
Bst1107I	GTATAC	1 cut(s)	258
Bst2UI	CCWGG	3 cut(s)	497, 522, 882
Bst4CI	ACNGT	1 cut(s)	826
Bst6I	CTCTTC	3 cut(s)	293, 873, 947
BstAUI	TGTACA	1 cut(s)	271
BstC8I	GCNNGC	3 cut(s)	22, 26, 203
BstDEI	CTNAG	6 cut(s)	101, 263, 367, 669, 780, 805
BstF5I	GGATG	2 cut(s)	505, 620
BstKTI	GATC	6 cut(s)	97, 244, 362, 726, 744, 901
BstMAI	GTCTC	1 cut(s)	537
BstMBI	GATC	6 cut(s)	94, 241, 359, 723, 741, 898
BstNI	CCWGG	3 cut(s)	497, 522, 882
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	4 cut(s)	495, 520, 578, 880
BstV1I	GCAGC	2 cut(s)	407, 473
BstX2I	RGATCY	1 cut(s)	359
BstYI	RGATCY	1 cut(s)	359
BstZ17I	GTATAC	1 cut(s)	258
Bsu15I	ATCGAT	1 cut(s)	726
BsuI	GTATCC	1 cut(s)	888
BsuRI	GGCC	2 cut(s)	237, 284
BsuTUI	ATCGAT	1 cut(s)	726
BtsCI	GGATG	2 cut(s)	505, 620
BtsIMutI	CAGTG	3 cut(s)	134, 271, 736
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	3 cut(s)	22, 26, 203
CciI	TCATGA	2 cut(s)	192, 720
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	283
ClaI	ATCGAT	1 cut(s)	726
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	9 cut(s)	186, 193, 206, 239, 248, 536, 721, 787, 923
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	6 cut(s)	101, 263, 367, 669, 780, 805
DpnI	GATC	6 cut(s)	96, 243, 361, 725, 743, 900
DpnII	GATC	6 cut(s)	94, 241, 359, 723, 741, 898
DraI	TTTAAA	1 cut(s)	657
DraIII	CACNNNGTG	1 cut(s)	266
DriI	GACNNNNNGTC	1 cut(s)	643
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	3 cut(s)	293, 873, 947
Eam1105I	GACNNNNNGTC	1 cut(s)	643
EarI	CTCTTC	3 cut(s)	293, 873, 947
Eco24I	GRGCYC	1 cut(s)	864
Eco32I	GATATC	1 cut(s)	832
Eco88I	CYCGRG	1 cut(s)	872
EcoRII	CCWGG	3 cut(s)	495, 520, 880
EcoRV	GATATC	1 cut(s)	832
EcoT38I	GRGCYC	1 cut(s)	864
FaeI	CATG	9 cut(s)	189, 196, 209, 242, 251, 539, 724, 790, 926
FalI	AAGNNNNNCTT	6 cut(s)	388, 420, 741, 773, 755, 787
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	9 cut(s)	185, 192, 205, 238, 247, 535, 720, 786, 922
FauI	CCCGC	1 cut(s)	850
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	2 cut(s)	421, 487
FokI	GGATG	2 cut(s)	512, 627
FriOI	GRGCYC	1 cut(s)	864
Fsp4HI	GCNGC	2 cut(s)	421, 487
GluI	GCNGC	2 cut(s)	421, 487
GsaI	CCCAGC	2 cut(s)	342, 819
GsuI	CTGGAG	3 cut(s)	543, 669, 903
HaeIII	GGCC	2 cut(s)	237, 284
HapII	CCGG	3 cut(s)	225, 579, 934
Hin1II	CATG	9 cut(s)	189, 196, 209, 242, 251, 539, 724, 790, 926
HindIII	AAGCTT	2 cut(s)	152, 755
HinfI	GANTC	8 cut(s)	80, 209, 530, 583, 644, 776, 885, 937
HpaII	CCGG	3 cut(s)	225, 579, 934
HphI	GGTGA	3 cut(s)	510, 568, 937
Hpy166II	GTNNAC	2 cut(s)	258, 736
Hpy188I	TCNGA	4 cut(s)	45, 102, 169, 808
Hpy188III	TCNNGA	9 cut(s)	193, 308, 369, 443, 648, 721, 745, 782, 872
Hpy8I	GTNNAC	2 cut(s)	258, 736
HpyAV	CCTTC	2 cut(s)	373, 457
HpyCH4III	ACNGT	1 cut(s)	826
HpyCH4V	TGCA	3 cut(s)	116, 489, 539
HpyF3I	CTNAG	6 cut(s)	101, 263, 367, 669, 780, 805
Hsp92II	CATG	9 cut(s)	189, 196, 209, 242, 251, 539, 724, 790, 926
Kzo9I	GATC	6 cut(s)	94, 241, 359, 723, 741, 898
LmnI	GCTCC	1 cut(s)	524
Lsp1109I	GCAGC	2 cut(s)	407, 473
LweI	GCATC	2 cut(s)	37, 810
MaeIII	GTNAC	2 cut(s)	35, 342
MalI	GATC	6 cut(s)	96, 243, 361, 725, 743, 900
MbiI	CCGCTC	1 cut(s)	527
MboI	GATC	6 cut(s)	94, 241, 359, 723, 741, 898
MboII	GAAGA	8 cut(s)	23, 182, 280, 365, 472, 826, 860, 934
MfeI	CAATTG	1 cut(s)	894
MflI	RGATCY	1 cut(s)	359
MhlI	GDGCHC	3 cut(s)	518, 568, 864
MlsI	TGGCCA	1 cut(s)	237
MluCI	AATT	3 cut(s)	46, 328, 894
MluNI	TGGCCA	1 cut(s)	237
MlyI	GAGTC	6 cut(s)	89, 218, 539, 653, 770, 894
MnlI	CCTC	4 cut(s)	296, 434, 644, 791
Mox20I	TGGCCA	1 cut(s)	237
MscI	TGGCCA	1 cut(s)	237
MseI	TTAA	3 cut(s)	434, 656, 716
Msp20I	TGGCCA	1 cut(s)	237
MspI	CCGG	3 cut(s)	225, 579, 934
MspR9I	CCNGG	4 cut(s)	497, 522, 580, 882
MunI	CAATTG	1 cut(s)	894
MvaI	CCWGG	3 cut(s)	497, 522, 882
NciI	CCSGG	1 cut(s)	580
NdeII	GATC	6 cut(s)	94, 241, 359, 723, 741, 898
NlaIII	CATG	9 cut(s)	189, 196, 209, 242, 251, 539, 724, 790, 926
NlaIV	GGNNCC	1 cut(s)	361
NspI	RCATGY	1 cut(s)	251
PaeR7I	CTCGAG	1 cut(s)	872
PagI	TCATGA	2 cut(s)	192, 720
PfeI	GAWTC	2 cut(s)	583, 937
PfoI	TCCNGGA	1 cut(s)	880
PkrI	GCNGC	2 cut(s)	422, 488
PleI	GAGTC	6 cut(s)	88, 217, 538, 652, 770, 893
PpsI	GAGTC	6 cut(s)	88, 217, 538, 652, 770, 893
Psp6I	CCWGG	3 cut(s)	495, 520, 880
PspFI	CCCAGC	2 cut(s)	338, 815
PspGI	CCWGG	3 cut(s)	495, 520, 880
PspN4I	GGNNCC	1 cut(s)	361
PspPI	GGNCC	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	359
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SaqAI	TTAA	3 cut(s)	434, 656, 716
SatI	GCNGC	2 cut(s)	421, 487
Sau3AI	GATC	6 cut(s)	94, 241, 359, 723, 741, 898
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	6 cut(s)	89, 218, 539, 653, 770, 894
ScrFI	CCNGG	4 cut(s)	497, 522, 580, 882
SduI	GDGCHC	3 cut(s)	518, 568, 864
SfaNI	GCATC	2 cut(s)	37, 810
Sfr274I	CTCGAG	1 cut(s)	872
SlaI	CTCGAG	1 cut(s)	872
SmlI	CTYRAG	1 cut(s)	872
SmoI	CTYRAG	1 cut(s)	872
Sse9I	AATT	3 cut(s)	46, 328, 894
SsiI	CCGC	3 cut(s)	245, 527, 857
SspI	AATATT	1 cut(s)	432
StyD4I	CCNGG	4 cut(s)	495, 520, 578, 880
TaaI	ACNGT	1 cut(s)	826
TaqI	TCGA	5 cut(s)	147, 291, 726, 744, 873
TasI	AATT	3 cut(s)	46, 328, 894
TatI	WGTACW	1 cut(s)	271
TfiI	GAWTC	2 cut(s)	583, 937
Tru1I	TTAA	3 cut(s)	434, 656, 716
Tru9I	TTAA	3 cut(s)	434, 656, 716
TscAI	CASTG	3 cut(s)	141, 271, 743
TseI	GCWGC	2 cut(s)	420, 486
TspDTI	ATGAA	3 cut(s)	122, 189, 366
TspGWI	ACGGA	1 cut(s)	810
TspRI	CASTG	3 cut(s)	141, 271, 743
XapI	RAATTY	1 cut(s)	46
XceI	RCATGY	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	2 cut(s)	209, 845
XhoI	CTCGAG	1 cut(s)	872
XmiI	GTMKAC	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.