Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Forward (+)

73109865 .. 73114027

Gene Structure 4163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021225

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGGCTTGGGAAAAGGGTCCGCGGTTGATTTGCATCTGCTAAAAGAAACGGGGTTAAATAGCGACGTATACGATGTCGTTTCTCTGAAACGGAGAGGAAGACTCGAGCAGGGAAGACAAAACAAACTAAGTTGCAGAAACATCAAAATGACAGAACTGGCTGCTCAGAAACATGTTCAATTCATTCTATCGAAAGCAAAGGAAAAGGATTCTTATGAATCAGTTCTGATGGAGCATATAAGATTGAATGGGGCATATTGGGGTTTGACCACTCTTGATCTTCTTGGAAAGCTTGATACTGTCGATGTCAATGAAGTTGTTTCAGAGGTCCTCCAGTGCCAGCATGAATCAGGTGGTTTTGGTGGTAACATTGGACATGACCCACACATACTTTATACCTTAAGTGCAGTGCAGGTTTTGGCCTTATTTGACAAGGTTGATGTTTTGGATACCGAAAAGGTTGCAAATTATGTAGCTGGGCTGCAAAATGAAGATGGCTCTTTTTCAGGGGACATGTGGGGTGAAGTTGATACGCGGTTTTCGTATATTGCTATCTGTTGTCTAGCATTACTACATCATTTGGATAAAATTAATGTGGAGAAGGCTGTATACTACATATTAAGTTGTAAAAATCACGATGGCGGATTTGGATGCACGCCCGGTGGAGAGTCTCATGCTGGTCAAATTTTTTGTTGTGTGGGTGCTCTAGCTATCACGGGGTCTCTACATCGTATTGACAAGGACCTTCTTGGATGGTGGTTATGTGAGCGGCAAGTGAAAGCAGGAGGTCTTAATGGCCGTCCTGAGAAGCTTCCTGATGTGTGCTACTCATGGTGGGTTCTATCTAGTTTGATCATGATTGACAGAGTTCATTGGATCAATAAGGAAAAGCTTGCCAAGTTCATTTTAGACTGTCAGGTTTTACACAACCTATTTGTACATTTGGAATTTAGGAGTTTCAAAAGTGAAATTCTAATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

328

Amino Acids

36.55

Weight (kDa)

6.15

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	53 - 306	1.1e-84	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	403
AccBSI	CCGCTC	1 cut(s)	769
AccI	GTMKAC	2 cut(s)	69, 609
AccII	CGCG	2 cut(s)	23, 535
AciI	CCGC	5 cut(s)	21, 23, 535, 642, 769
AclWI	GGATC	1 cut(s)	884
AcoI	YGGCCR	1 cut(s)	796
AcsI	RAATTY	3 cut(s)	684, 947, 969
AfaI	GTAC	1 cut(s)	939
AflII	CTTAAG	1 cut(s)	400
AflIII	ACRYGT	2 cut(s)	172, 513
AgsI	TTSAA	3 cut(s)	179, 247, 961
AluBI	AGCT	5 cut(s)	292, 476, 710, 811, 892
AluI	AGCT	5 cut(s)	292, 476, 710, 811, 892
Alw21I	GWGCWC	1 cut(s)	706
Alw26I	GTCTC	2 cut(s)	675, 726
AlwI	GGATC	1 cut(s)	884
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	2 cut(s)	420, 796
ApeKI	GCWGC	2 cut(s)	161, 481
ApoI	RAATTY	3 cut(s)	684, 947, 969
AseI	ATTAAT	1 cut(s)	591
Asp700I	GAANNNNTTC	1 cut(s)	222
AspS9I	GGNCC	3 cut(s)	18, 328, 742
AsuC2I	CCSGG	1 cut(s)	660
AsuHPI	GGTGA	1 cut(s)	533
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	3 cut(s)	18, 328, 742
BarI	GAAGNNNNNNTAC	2 cut(s)	593, 625
BbsI	GAAGAC	2 cut(s)	106, 121
Bbv12I	GWGCWC	1 cut(s)	706
BbvI	GCAGC	2 cut(s)	148, 468
BccI	CCATC	4 cut(s)	223, 488, 632, 747
BceAI	ACGGC	1 cut(s)	783
BcgI	CGANNNNNNTGC	2 cut(s)	443, 477
BciVI	GTATCC	1 cut(s)	442
BclI	TGATCA	1 cut(s)	852
BcnI	CCSGG	1 cut(s)	660
BcoDI	GTCTC	2 cut(s)	675, 726
BfaI	CTAG	3 cut(s)	563, 707, 846
BfrI	CTTAAG	1 cut(s)	400
BfuAI	ACCTGC	1 cut(s)	403
BfuI	GTATCC	1 cut(s)	442
BisI	GCNGC	3 cut(s)	162, 482, 770
BlsI	GCNGC	3 cut(s)	163, 483, 771
Bme1390I	CCNGG	1 cut(s)	660
Bme18I	GGWCC	3 cut(s)	18, 328, 742
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	3 cut(s)	18, 328, 742
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	1 cut(s)	660
BmsI	GCATC	2 cut(s)	43, 641
BpiI	GAAGAC	2 cut(s)	106, 121
BplI	GAGNNNNNCTC	2 cut(s)	87, 119
BpmI	CTGGAG	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	660
BsaBI	GATNNNNATC	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	726
BsaJI	CCNNGG	1 cut(s)	21
Bse1I	ACTGG	2 cut(s)	162, 334
Bse8I	GATNNNNATC	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	2 cut(s)	656, 758
BseJI	GATNNNNATC	1 cut(s)	33
BseMII	CTCAG	2 cut(s)	179, 795
BseNI	ACTGG	2 cut(s)	162, 334
BseXI	GCAGC	2 cut(s)	148, 468
BseYI	CCCAGC	1 cut(s)	476
BsgI	GTGCAG	2 cut(s)	426, 431
Bsh1236I	CGCG	2 cut(s)	23, 535
BshFI	GGCC	2 cut(s)	422, 798
BsiHKAI	GWGCWC	1 cut(s)	706
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	660
BslFI	GGGAC	1 cut(s)	524
BsmAI	GTCTC	2 cut(s)	675, 726
BsmFI	GGGAC	1 cut(s)	524
BsnI	GGCC	2 cut(s)	422, 798
Bso31I	GGTCTC	1 cut(s)	726
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	706
Bsp1407I	TGTACA	1 cut(s)	937
Bsp143I	GATC	3 cut(s)	277, 852, 876
BspACI	CCGC	5 cut(s)	21, 23, 535, 642, 769
BspANI	GGCC	2 cut(s)	422, 798
BspCNI	CTCAG	2 cut(s)	178, 796
BspFNI	CGCG	2 cut(s)	23, 535
BspHI	TCATGA	1 cut(s)	855
BspLI	GGNNCC	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	1 cut(s)	884
BspTI	CTTAAG	1 cut(s)	400
BspTNI	GGTCTC	1 cut(s)	726
BsrBI	CCGCTC	1 cut(s)	769
BsrGI	TGTACA	1 cut(s)	937
BsrI	ACTGG	2 cut(s)	162, 334
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	3 cut(s)	277, 852, 876
BssNAI	GTATAC	2 cut(s)	70, 610
Bst1107I	GTATAC	2 cut(s)	70, 610
Bst4CI	ACNGT	2 cut(s)	301, 914
BstAFI	CTTAAG	1 cut(s)	400
BstAUI	TGTACA	1 cut(s)	937
BstC8I	GCNNGC	3 cut(s)	341, 656, 894
BstDEI	CTNAG	3 cut(s)	128, 165, 804
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	2 cut(s)	656, 758
BstFNI	CGCG	2 cut(s)	23, 535
BstKTI	GATC	3 cut(s)	280, 855, 879
BstMAI	GTCTC	2 cut(s)	675, 726
BstMBI	GATC	3 cut(s)	277, 852, 876
BstNSI	RCATGY	2 cut(s)	176, 517
BstSCI	CCNGG	1 cut(s)	658
BstUI	CGCG	2 cut(s)	23, 535
BstV1I	GCAGC	2 cut(s)	148, 468
BstV2I	GAAGAC	2 cut(s)	106, 121
BstZ17I	GTATAC	2 cut(s)	70, 610
BsuI	GTATCC	1 cut(s)	442
BsuRI	GGCC	2 cut(s)	422, 798
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	656, 758
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	2 cut(s)	341, 414
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	3 cut(s)	341, 656, 894
CciI	TCATGA	1 cut(s)	855
Cfr13I	GGNCC	3 cut(s)	18, 328, 742
Cfr42I	CCGCGG	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	938
CviAII	CATG	8 cut(s)	173, 344, 377, 514, 674, 831, 856, 979
CviQI	GTAC	1 cut(s)	938
DdeI	CTNAG	3 cut(s)	128, 165, 804
DpnI	GATC	3 cut(s)	279, 854, 878
DpnII	GATC	3 cut(s)	277, 852, 876
EaeI	YGGCCR	1 cut(s)	796
EciI	GGCGGA	1 cut(s)	657
Eco31I	GGTCTC	1 cut(s)	726
Eco47I	GGWCC	3 cut(s)	18, 328, 742
Eco88I	CYCGRG	1 cut(s)	104
EcoO109I	RGGNCCY	2 cut(s)	328, 742
FaeI	CATG	8 cut(s)	176, 347, 380, 517, 677, 834, 859, 982
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	8 cut(s)	172, 343, 376, 513, 673, 830, 855, 978
FbaI	TGATCA	1 cut(s)	852
FblI	GTMKAC	2 cut(s)	69, 609
Fnu4HI	GCNGC	3 cut(s)	162, 482, 770
FokI	GGATG	2 cut(s)	663, 765
Fsp4HI	GCNGC	3 cut(s)	162, 482, 770
FspBI	CTAG	3 cut(s)	563, 707, 846
GluI	GCNGC	3 cut(s)	162, 482, 770
GsaI	CCCAGC	1 cut(s)	480
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	2 cut(s)	422, 798
HapII	CCGG	1 cut(s)	660
Hin1II	CATG	8 cut(s)	176, 347, 380, 517, 677, 834, 859, 982
HindIII	AAGCTT	3 cut(s)	290, 809, 890
HinfI	GANTC	5 cut(s)	102, 209, 218, 347, 668
HpaII	CCGG	1 cut(s)	660
HphI	GGTGA	1 cut(s)	533
Hpy166II	GTNNAC	2 cut(s)	70, 610
Hpy188I	TCNGA	4 cut(s)	87, 168, 228, 325
Hpy188III	TCNNGA	5 cut(s)	275, 635, 803, 815, 856
Hpy8I	GTNNAC	2 cut(s)	70, 610
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	2 cut(s)	595, 755
HpyCH4III	ACNGT	2 cut(s)	301, 914
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	7 cut(s)	34, 135, 407, 412, 464, 484, 654
HpyF3I	CTNAG	3 cut(s)	128, 165, 804
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	8 cut(s)	176, 347, 380, 517, 677, 834, 859, 982
Ksp22I	TGATCA	1 cut(s)	852
KspI	CCGCGG	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	277, 852, 876
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	2 cut(s)	148, 468
LweI	GCATC	2 cut(s)	43, 641
MaeI	CTAG	3 cut(s)	563, 707, 846
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	3 cut(s)	279, 854, 878
MbiI	CCGCTC	1 cut(s)	769
MboI	GATC	3 cut(s)	277, 852, 876
MboII	GAAGA	4 cut(s)	111, 126, 272, 503
MhlI	GDGCHC	1 cut(s)	706
MluCI	AATT	6 cut(s)	179, 466, 588, 684, 947, 969
MlyI	GAGTC	2 cut(s)	96, 677
MnlI	CCTC	4 cut(s)	89, 319, 341, 779
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	5 cut(s)	56, 401, 591, 620, 792
MslI	CAYNNNNRTG	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	23
MspCI	CTTAAG	1 cut(s)	400
MspI	CCGG	1 cut(s)	660
MspR9I	CCNGG	1 cut(s)	660
MvnI	CGCG	2 cut(s)	23, 535
NciI	CCSGG	1 cut(s)	660
NdeII	GATC	3 cut(s)	277, 852, 876
NlaIII	CATG	8 cut(s)	176, 347, 380, 517, 677, 834, 859, 982
NlaIV	GGNNCC	1 cut(s)	19
NspI	RCATGY	2 cut(s)	176, 517
PaeR7I	CTCGAG	1 cut(s)	104
PagI	TCATGA	1 cut(s)	855
PciI	ACATGT	2 cut(s)	172, 513
PcsI	WCGNNNNNNNCGW	1 cut(s)	539
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	3 cut(s)	209, 218, 347
PkrI	GCNGC	3 cut(s)	163, 483, 771
PleI	GAGTC	2 cut(s)	96, 676
PpsI	GAGTC	2 cut(s)	96, 676
PpuMI	RGGWCCY	2 cut(s)	328, 742
PscI	ACATGT	2 cut(s)	172, 513
PshBI	ATTAAT	1 cut(s)	591
Psp5II	RGGWCCY	2 cut(s)	328, 742
PspFI	CCCAGC	1 cut(s)	476
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	3 cut(s)	18, 328, 742
PspPPI	RGGWCCY	2 cut(s)	328, 742
PspXI	VCTCGAGB	1 cut(s)	104
RsaI	GTAC	1 cut(s)	939
RsaNI	GTAC	1 cut(s)	938
RseI	CAYNNNNRTG	1 cut(s)	146
SacII	CCGCGG	1 cut(s)	24
SaqAI	TTAA	5 cut(s)	56, 401, 591, 620, 792
SatI	GCNGC	3 cut(s)	162, 482, 770
Sau3AI	GATC	3 cut(s)	277, 852, 876
Sau96I	GGNCC	3 cut(s)	18, 328, 742
SchI	GAGTC	2 cut(s)	96, 677
ScrFI	CCNGG	1 cut(s)	660
SduI	GDGCHC	1 cut(s)	706
SfaNI	GCATC	2 cut(s)	43, 641
Sfr274I	CTCGAG	1 cut(s)	104
Sfr303I	CCGCGG	1 cut(s)	24
SgrBI	CCGCGG	1 cut(s)	24
SinI	GGWCC	3 cut(s)	18, 328, 742
SlaI	CTCGAG	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	2 cut(s)	104, 400
SmoI	CTYRAG	2 cut(s)	104, 400
Sse9I	AATT	6 cut(s)	179, 466, 588, 684, 947, 969
SsiI	CCGC	5 cut(s)	21, 23, 535, 642, 769
SspMI	CTAG	3 cut(s)	563, 707, 846
StyD4I	CCNGG	1 cut(s)	658
TaaI	ACNGT	2 cut(s)	301, 914
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	3 cut(s)	105, 191, 303
TasI	AATT	6 cut(s)	179, 466, 588, 684, 947, 969
TatI	WGTACW	1 cut(s)	937
TauI	GCSGC	1 cut(s)	772
TfiI	GAWTC	3 cut(s)	209, 218, 347
Tru1I	TTAA	5 cut(s)	56, 401, 591, 620, 792
Tru9I	TTAA	5 cut(s)	56, 401, 591, 620, 792
TscAI	CASTG	2 cut(s)	341, 414
TseI	GCWGC	2 cut(s)	161, 481
TspDTI	ATGAA	7 cut(s)	172, 231, 327, 360, 504, 860, 892
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	2 cut(s)	341, 414
Vha464I	CTTAAG	1 cut(s)	400
VpaK11BI	GGWCC	3 cut(s)	18, 328, 742
VspI	ATTAAT	1 cut(s)	591
XapI	RAATTY	3 cut(s)	684, 947, 969
XceI	RCATGY	2 cut(s)	176, 517
XhoI	CTCGAG	1 cut(s)	104
XmiI	GTMKAC	2 cut(s)	69, 609
XmnI	GAANNNNTTC	1 cut(s)	222
XspI	CTAG	3 cut(s)	563, 707, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.