Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Reverse (-)

44963809 .. 44967361

Gene Structure 3553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G022830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGTTGGGTTCAGAAATGGTTGGATTTCTCTAGGTTTGGTCTTGACTGTGATTTCTGAGTTCAGAAATGGTTGGGAACTCAGAAGACATGTACTTTTTGTTTGTGTTGCTTCAACTGCTTGTAGTTGTTTACATGTGTTTGTTCTGGCAAATGTTAATGAGGTCGTTTCAGAGGTCCTGCAGTGCCAGCATGAATCAGGTGGATTTGGTGGTAACATTGGACATGATCCACACATACTTTGTACCTTAAGTGCTGTGCAGGTTTTGGCCTTACTTGACAAGGTTGATGTTTGGATGTTGAAAATGTTGCAGATTCAAATTTTGTCTGGCTTAATATTCAACTCAGACGTAGCAGGGCTGCAAAATGAAGATGGATCATTTTCAGGGGACATGTGGGGTGAAGTTGATACACGAAAGCTGTGGACCATTTTAAGTTGTATAAATCATGATGGCGGATTTGGATGCACGCCTGGTGGGGAGTCTCATGCAGATCAAATTTTCTGTTGTGTCGGAGCCCTTGCTATCACAGGGTCTCTACATCGTATTGACAAGGACCTTCTTGGATGGTGGTTATGTGAGCGGCAAGTTAAATCAGGAGGTCTTAATGGTCGTCCAGAGAAGCTTCCTGATGTGTGCTACTCATGGTGGGTTCTATCTAGCTTAATCATGATTGACAGGGTTCATTGGATCAATAAGGAAAAGCTTGCCAAGTTCATTTTAGACTGCCAGGACATTGAAAATGGGGGAATTTCTGATAGACCAGATAATGCATGTGATGCCTACCATACATACTTAGGTGTAGCAGTACCTTATATAACTTTGCCTCTGCACTTGGTTGTTACAGTTTACATATTTGATTGTGAAGGTATTGTAGATTGTATAACAAAATCCGTTACAACGAAACCAACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

304

Amino Acids

33.57

Weight (kDa)

5.38

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	38 - 141	7.6e-12	Prenyltransferase alpha-alpha toroid domain
Prenyltrans	PF00432	143 - 268	7.8e-50	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	250
AccBSI	CCGCTC	1 cut(s)	580
AciI	CCGC	2 cut(s)	453, 580
AclWI	GGATC	3 cut(s)	221, 382, 695
AcsI	RAATTY	3 cut(s)	318, 495, 747
AfaI	GTAC	3 cut(s)	93, 244, 807
AflII	CTTAAG	1 cut(s)	247
AflIII	ACRYGT	3 cut(s)	88, 133, 390
AgsI	TTSAA	5 cut(s)	114, 301, 317, 340, 737
AjnI	CCWGG	2 cut(s)	469, 726
AluBI	AGCT	4 cut(s)	418, 622, 660, 703
AluI	AGCT	4 cut(s)	418, 622, 660, 703
Alw26I	GTCTC	2 cut(s)	486, 537
AlwI	GGATC	3 cut(s)	221, 382, 695
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	3 cut(s)	318, 495, 747
AspS9I	GGNCC	3 cut(s)	175, 423, 553
AsuHPI	GGTGA	1 cut(s)	410
AvaII	GGWCC	3 cut(s)	175, 423, 553
BanII	GRGCYC	1 cut(s)	517
BbsI	GAAGAC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	3 cut(s)	365, 443, 558
BciT130I	CCWGG	2 cut(s)	471, 728
BcoDI	GTCTC	2 cut(s)	486, 537
BfaI	CTAG	2 cut(s)	32, 657
BfmI	CTRYAG	1 cut(s)	179
BfrI	CTTAAG	1 cut(s)	247
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	2 cut(s)	359, 581
BlsI	GCNGC	2 cut(s)	360, 582
Bme1390I	CCNGG	2 cut(s)	471, 728
Bme18I	GGWCC	3 cut(s)	175, 423, 553
BmgT120I	GGNCC	3 cut(s)	175, 423, 553
BmiI	GGNNCC	1 cut(s)	514
BmrFI	CCNGG	2 cut(s)	471, 728
BmsI	GCATC	2 cut(s)	452, 766
BpiI	GAAGAC	1 cut(s)	91
BsaI	GGTCTC	1 cut(s)	537
BseBI	CCWGG	2 cut(s)	471, 728
BseGI	GGATG	3 cut(s)	300, 467, 569
BseMII	CTCAG	3 cut(s)	48, 94, 357
BseXI	GCAGC	1 cut(s)	345
BsgI	GTGCAG	2 cut(s)	278, 812
BshFI	GGCC	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	401
BsmAI	GTCTC	2 cut(s)	486, 537
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	1 cut(s)	269
Bso31I	GGTCTC	1 cut(s)	537
Bsp1286I	GDGCHC	1 cut(s)	517
Bsp143I	GATC	4 cut(s)	226, 374, 490, 687
BspACI	CCGC	2 cut(s)	453, 580
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	3 cut(s)	49, 93, 356
BspHI	TCATGA	2 cut(s)	445, 666
BspLI	GGNNCC	1 cut(s)	514
BspMAI	CTGCAG	1 cut(s)	183
BspMI	ACCTGC	1 cut(s)	250
BspPI	GGATC	3 cut(s)	221, 382, 695
BspTI	CTTAAG	1 cut(s)	247
BspTNI	GGTCTC	1 cut(s)	537
BsrBI	CCGCTC	1 cut(s)	580
BssMI	GATC	4 cut(s)	226, 374, 490, 687
Bst2UI	CCWGG	2 cut(s)	471, 728
Bst4CI	ACNGT	2 cut(s)	49, 844
BstAFI	CTTAAG	1 cut(s)	247
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstC8I	GCNNGC	3 cut(s)	188, 467, 705
BstDEI	CTNAG	4 cut(s)	57, 80, 343, 793
BstF5I	GGATG	3 cut(s)	300, 467, 569
BstKTI	GATC	4 cut(s)	229, 377, 493, 690
BstMAI	GTCTC	2 cut(s)	486, 537
BstMBI	GATC	4 cut(s)	226, 374, 490, 687
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 187, 776
BstNI	CCWGG	2 cut(s)	471, 728
BstNSI	RCATGY	4 cut(s)	92, 137, 394, 774
BstSCI	CCNGG	2 cut(s)	469, 726
BstSFI	CTRYAG	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	345
BstV2I	GAAGAC	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	3 cut(s)	300, 467, 569
BtsI	GCAGTG	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	188
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	3 cut(s)	188, 467, 705
CciI	TCATGA	2 cut(s)	445, 666
Cfr13I	GGNCC	3 cut(s)	175, 423, 553
Csp6I	GTAC	3 cut(s)	92, 243, 806
CviJI	RGCY	8 cut(s)	269, 330, 358, 418, 515, 622, 660, 703
CviKI_1	RGCY	8 cut(s)	269, 330, 358, 418, 515, 622, 660, 703
CviQI	GTAC	3 cut(s)	92, 243, 806
DdeI	CTNAG	4 cut(s)	57, 80, 343, 793
DpnI	GATC	4 cut(s)	228, 376, 492, 689
DpnII	GATC	4 cut(s)	226, 374, 490, 687
EciI	GGCGGA	1 cut(s)	468
Eco24I	GRGCYC	1 cut(s)	517
Eco31I	GGTCTC	1 cut(s)	537
Eco47I	GGWCC	3 cut(s)	175, 423, 553
EcoO109I	RGGNCCY	2 cut(s)	175, 553
EcoRII	CCWGG	2 cut(s)	469, 726
EcoT22I	ATGCAT	1 cut(s)	772
EcoT38I	GRGCYC	1 cut(s)	517
FaqI	GGGAC	1 cut(s)	401
Fnu4HI	GCNGC	2 cut(s)	359, 581
FokI	GGATG	3 cut(s)	307, 474, 576
FriOI	GRGCYC	1 cut(s)	517
Fsp4HI	GCNGC	2 cut(s)	359, 581
FspBI	CTAG	2 cut(s)	32, 657
GluI	GCNGC	2 cut(s)	359, 581
HaeIII	GGCC	1 cut(s)	269
HindIII	AAGCTT	2 cut(s)	620, 701
HinfI	GANTC	3 cut(s)	194, 313, 479
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	3 cut(s)	131, 423, 847
Hpy188I	TCNGA	8 cut(s)	14, 58, 65, 83, 172, 346, 512, 754
Hpy188III	TCNNGA	6 cut(s)	43, 446, 594, 614, 626, 667
Hpy8I	GTNNAC	3 cut(s)	131, 423, 847
HpyAV	CCTTC	2 cut(s)	566, 857
HpyCH4III	ACNGT	2 cut(s)	49, 844
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	8 cut(s)	181, 259, 310, 361, 465, 488, 770, 829
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 187, 776
HpyF3I	CTNAG	4 cut(s)	57, 80, 343, 793
HpySE526I	ACGT	1 cut(s)	348
Kzo9I	GATC	4 cut(s)	226, 374, 490, 687
LmnI	GCTCC	1 cut(s)	512
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	2 cut(s)	452, 766
MaeI	CTAG	2 cut(s)	32, 657
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	3 cut(s)	212, 838, 892
MalI	GATC	4 cut(s)	228, 376, 492, 689
MbiI	CCGCTC	1 cut(s)	580
MboI	GATC	4 cut(s)	226, 374, 490, 687
MboII	GAAGA	2 cut(s)	96, 380
MhlI	GDGCHC	1 cut(s)	517
MluCI	AATT	3 cut(s)	318, 495, 747
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	490
MnlI	CCTC	4 cut(s)	154, 166, 590, 834
Mph1103I	ATGCAT	1 cut(s)	772
MseI	TTAA	7 cut(s)	156, 248, 332, 431, 588, 603, 662
MspCI	CTTAAG	1 cut(s)	247
MspR9I	CCNGG	2 cut(s)	471, 728
MvaI	CCWGG	2 cut(s)	471, 728
MwoI	GCNNNNNNNGC	3 cut(s)	116, 187, 776
NdeII	GATC	4 cut(s)	226, 374, 490, 687
NlaIV	GGNNCC	1 cut(s)	514
NsiI	ATGCAT	1 cut(s)	772
NspI	RCATGY	4 cut(s)	92, 137, 394, 774
PagI	TCATGA	2 cut(s)	445, 666
PciI	ACATGT	3 cut(s)	88, 133, 390
PfeI	GAWTC	2 cut(s)	194, 313
PkrI	GCNGC	2 cut(s)	360, 582
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PpuMI	RGGWCCY	2 cut(s)	175, 553
PscI	ACATGT	3 cut(s)	88, 133, 390
Psp5II	RGGWCCY	2 cut(s)	175, 553
Psp6I	CCWGG	2 cut(s)	469, 726
PspGI	CCWGG	2 cut(s)	469, 726
PspN4I	GGNNCC	1 cut(s)	514
PspPI	GGNCC	3 cut(s)	175, 423, 553
PspPPI	RGGWCCY	2 cut(s)	175, 553
PstI	CTGCAG	1 cut(s)	183
RsaI	GTAC	3 cut(s)	93, 244, 807
RsaNI	GTAC	3 cut(s)	92, 243, 806
SaqAI	TTAA	7 cut(s)	156, 248, 332, 431, 588, 603, 662
SatI	GCNGC	2 cut(s)	359, 581
Sau3AI	GATC	4 cut(s)	226, 374, 490, 687
Sau96I	GGNCC	3 cut(s)	175, 423, 553
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	2 cut(s)	471, 728
SduI	GDGCHC	1 cut(s)	517
SfaNI	GCATC	2 cut(s)	452, 766
SfcI	CTRYAG	1 cut(s)	179
SinI	GGWCC	3 cut(s)	175, 423, 553
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	3 cut(s)	318, 495, 747
SsiI	CCGC	2 cut(s)	453, 580
SspI	AATATT	1 cut(s)	336
SspMI	CTAG	2 cut(s)	32, 657
StyD4I	CCNGG	2 cut(s)	469, 726
TaaI	ACNGT	2 cut(s)	49, 844
TaiI	ACGT	1 cut(s)	351
TasI	AATT	3 cut(s)	318, 495, 747
TatI	WGTACW	1 cut(s)	91
TauI	GCSGC	1 cut(s)	583
TfiI	GAWTC	2 cut(s)	194, 313
Tru1I	TTAA	7 cut(s)	156, 248, 332, 431, 588, 603, 662
Tru9I	TTAA	7 cut(s)	156, 248, 332, 431, 588, 603, 662
TscAI	CASTG	1 cut(s)	188
TseI	GCWGC	1 cut(s)	358
TspDTI	ATGAA	4 cut(s)	207, 381, 671, 703
TspGWI	ACGGA	1 cut(s)	880
TspRI	CASTG	1 cut(s)	188
Vha464I	CTTAAG	1 cut(s)	247
VpaK11BI	GGWCC	3 cut(s)	175, 423, 553
XapI	RAATTY	3 cut(s)	318, 495, 747
XceI	RCATGY	4 cut(s)	92, 137, 394, 774
XspI	CTAG	2 cut(s)	32, 657
Zsp2I	ATGCAT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.