Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Reverse (-)

49895215 .. 49897983

Gene Structure 2769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20298

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGAACTCCTTGCTGATCAGTGACCTTTTACCATATATTTGCCTGATCGTGACATGTTTAACAGATGGGGGAGCTGGCATCTCAGAAACATGTTCGATTCATTCTATCAAAAGCAAGGAGAAGGACTCTTATGAGTCAGTTTTGATGGAGCATATAAGAATGAATGGAGCTTACTGGGGTTTGACGACTCTTGATCTTCTTGGAAAGCTTGACACTGTGGATTTCAATGAGGTCGTTTCAGAGGTCCTGCAGTGCCAGCATGAGTCAGGTGGGTTTGGTGGTAACATTGGACATGATCCACACATACTTTATACCTTAAGTGCTGTGCAGGTTTTGGCCTTATTTGACAAGGTTGATGTTTTGGATGTTGAGAAGGTTGCAGATTACGTAGCTGGGCTGCAAAATGAAGATGGATCATTTTCAGGGGACATGTGGGGTGAAGTTGATACACGGTTTTCTTATATTGCTATCTGCCGTCTCGCATTACTACATCTTTTGGATAAAATCAATGTGGAGAAAGCTGTGGACTACATTTTAAGTTGTAAAAATCATGATGGCGGATTTGGATGCACGCCTGGTGGGGAATCTCATGCAGGTCAAATTTTCTGTTGTGTGGGAGCCCTTGCTATCACAGGGTCTCTACATCGTATTGACAAGGACCTTCTTGTATGGTGGTTATGTGAGCGGCAAGTTAAATCAGGAGGTCTTAATGGTCGTCCAGAGAAGCTTCCTGATTTTAGCTCTTCTTGGGAGGTCTTAATGGCCATCCAGAGAAATATCCTAATGTGTGCTACTCATGGTGGGTTCTATATATCTAGTTTAATCATGATTGACAGGGTTCATTGGATCAATAAGGAAAAGCTTGCCAAGTTCATTTTAGACTGCCAGGACATTGAAAATGGGGGAATTTCTGATAGACCAGATGATGCATGTGATACCTACCATACATACTTTGGACTTTCCTTACTTGAATATCCTGGGGTGAAGGCCATAGATCCAGCTTATGCTTTGCCAGTTGATGTTGTAAATAGCATTATCTTAGGCATAAAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

351

Amino Acids

38.51

Weight (kDa)

4.81

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	45 - 336	2.1e-83	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	319, 584
AccBSI	CCGCTC	1 cut(s)	685
AciI	CCGC	2 cut(s)	558, 685
AclWI	GGATC	4 cut(s)	290, 421, 854, 989
AcoI	YGGCCR	1 cut(s)	762
AcsI	RAATTY	2 cut(s)	600, 906
AflII	CTTAAG	1 cut(s)	316
AflIII	ACRYGT	3 cut(s)	53, 89, 429
AgsI	TTSAA	3 cut(s)	226, 896, 971
AjnI	CCWGG	3 cut(s)	574, 885, 976
AluBI	AGCT	9 cut(s)	74, 170, 208, 392, 521, 727, 741, 862, 1001
AluI	AGCT	9 cut(s)	74, 170, 208, 392, 521, 727, 741, 862, 1001
Alw26I	GTCTC	2 cut(s)	482, 642
AlwI	GGATC	4 cut(s)	290, 421, 854, 989
AoxI	GGCC	3 cut(s)	336, 762, 987
ApeKI	GCWGC	1 cut(s)	397
ApoI	RAATTY	2 cut(s)	600, 906
AspS9I	GGNCC	2 cut(s)	244, 658
AsuHPI	GGTGA	2 cut(s)	449, 994
AvaII	GGWCC	2 cut(s)	244, 658
BalI	TGGCCA	1 cut(s)	764
BanII	GRGCYC	1 cut(s)	622
BbvI	GCAGC	1 cut(s)	384
BccI	CCATC	5 cut(s)	59, 139, 404, 548, 773
BceAI	ACGGC	1 cut(s)	459
BciT130I	CCWGG	3 cut(s)	576, 887, 978
BclI	TGATCA	1 cut(s)	15
BcoDI	GTCTC	2 cut(s)	482, 642
BfaI	CTAG	1 cut(s)	816
BfmI	CTRYAG	1 cut(s)	248
BfrI	CTTAAG	1 cut(s)	316
BfuAI	ACCTGC	2 cut(s)	319, 584
BisI	GCNGC	2 cut(s)	398, 686
BlsI	GCNGC	2 cut(s)	399, 687
Bme1390I	CCNGG	3 cut(s)	576, 887, 978
Bme18I	GGWCC	2 cut(s)	244, 658
BmgT120I	GGNCC	2 cut(s)	244, 658
BmiI	GGNNCC	1 cut(s)	619
BmrFI	CCNGG	3 cut(s)	576, 887, 978
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	3 cut(s)	87, 557, 916
BmuI	ACTGGG	1 cut(s)	184
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BsaAI	YACGTR	1 cut(s)	388
BsaI	GGTCTC	1 cut(s)	642
BsaJI	CCNNGG	1 cut(s)	977
Bse1I	ACTGG	2 cut(s)	179, 1013
BseBI	CCWGG	3 cut(s)	576, 887, 978
BseDI	CCNNGG	1 cut(s)	977
BseGI	GGATG	3 cut(s)	370, 572, 765
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	2 cut(s)	179, 1013
BseXI	GCAGC	1 cut(s)	384
BseYI	CCCAGC	1 cut(s)	392
BsgI	GTGCAG	1 cut(s)	347
BshFI	GGCC	3 cut(s)	338, 764, 989
BslFI	GGGAC	1 cut(s)	440
BsmAI	GTCTC	2 cut(s)	482, 642
BsmBI	CGTCTC	1 cut(s)	482
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	3 cut(s)	338, 764, 989
Bso31I	GGTCTC	1 cut(s)	642
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp143I	GATC	7 cut(s)	15, 45, 193, 295, 413, 846, 994
BspACI	CCGC	2 cut(s)	558, 685
BspANI	GGCC	3 cut(s)	338, 764, 989
BspCNI	CTCAG	1 cut(s)	95
BspHI	TCATGA	2 cut(s)	550, 825
BspLI	GGNNCC	1 cut(s)	619
BspMAI	CTGCAG	1 cut(s)	252
BspMI	ACCTGC	2 cut(s)	319, 584
BspPI	GGATC	4 cut(s)	290, 421, 854, 989
BspQI	GCTCTTC	1 cut(s)	748
BspTI	CTTAAG	1 cut(s)	316
BspTNI	GGTCTC	1 cut(s)	642
BsrBI	CCGCTC	1 cut(s)	685
BsrI	ACTGG	2 cut(s)	179, 1013
BssECI	CCNNGG	1 cut(s)	977
BssMI	GATC	7 cut(s)	15, 45, 193, 295, 413, 846, 994
Bst2UI	CCWGG	3 cut(s)	576, 887, 978
Bst4CI	ACNGT	2 cut(s)	217, 453
Bst6I	CTCTTC	1 cut(s)	748
BstAFI	CTTAAG	1 cut(s)	316
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	4 cut(s)	76, 257, 572, 864
BstDEI	CTNAG	2 cut(s)	82, 1039
BstF5I	GGATG	3 cut(s)	370, 572, 765
BstKTI	GATC	7 cut(s)	18, 48, 196, 298, 416, 849, 997
BstMAI	GTCTC	2 cut(s)	482, 642
BstMBI	GATC	7 cut(s)	15, 45, 193, 295, 413, 846, 994
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstNI	CCWGG	3 cut(s)	576, 887, 978
BstNSI	RCATGY	4 cut(s)	57, 93, 433, 933
BstSCI	CCNGG	3 cut(s)	574, 885, 976
BstSFI	CTRYAG	1 cut(s)	248
BstSNI	TACGTA	1 cut(s)	388
BstV1I	GCAGC	1 cut(s)	384
BstX2I	RGATCY	1 cut(s)	994
BstYI	RGATCY	1 cut(s)	994
BsuRI	GGCC	3 cut(s)	338, 764, 989
BtsCI	GGATG	3 cut(s)	370, 572, 765
BtsI	GCAGTG	1 cut(s)	257
BtsIMutI	CAGTG	3 cut(s)	25, 213, 257
BveI	ACCTGC	2 cut(s)	319, 584
Cac8I	GCNNGC	4 cut(s)	76, 257, 572, 864
CciI	TCATGA	2 cut(s)	550, 825
Cfr13I	GGNCC	2 cut(s)	244, 658
DdeI	CTNAG	2 cut(s)	82, 1039
DpnI	GATC	7 cut(s)	17, 47, 195, 297, 415, 848, 996
DpnII	GATC	7 cut(s)	15, 45, 193, 295, 413, 846, 994
EaeI	YGGCCR	1 cut(s)	762
Eam1104I	CTCTTC	1 cut(s)	748
EarI	CTCTTC	1 cut(s)	748
EciI	GGCGGA	1 cut(s)	573
Eco105I	TACGTA	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	622
Eco31I	GGTCTC	1 cut(s)	642
Eco47I	GGWCC	2 cut(s)	244, 658
EcoO109I	RGGNCCY	2 cut(s)	244, 658
EcoRII	CCWGG	3 cut(s)	574, 885, 976
EcoT22I	ATGCAT	1 cut(s)	931
EcoT38I	GRGCYC	1 cut(s)	622
Esp3I	CGTCTC	1 cut(s)	482
FaqI	GGGAC	1 cut(s)	440
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	2 cut(s)	398, 686
FokI	GGATG	3 cut(s)	377, 579, 752
FriOI	GRGCYC	1 cut(s)	622
Fsp4HI	GCNGC	2 cut(s)	398, 686
FspBI	CTAG	1 cut(s)	816
GluI	GCNGC	2 cut(s)	398, 686
GsaI	CCCAGC	1 cut(s)	396
HaeIII	GGCC	3 cut(s)	338, 764, 989
HindIII	AAGCTT	3 cut(s)	206, 725, 860
HinfI	GANTC	6 cut(s)	97, 125, 134, 187, 263, 584
HphI	GGTGA	2 cut(s)	449, 994
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	3 cut(s)	85, 241, 913
Hpy188III	TCNNGA	8 cut(s)	49, 191, 551, 699, 719, 731, 769, 826
Hpy8I	GTNNAC	1 cut(s)	526
HpyAV	CCTTC	4 cut(s)	115, 367, 671, 979
HpyCH4III	ACNGT	2 cut(s)	217, 453
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	7 cut(s)	250, 328, 380, 400, 570, 593, 929
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
HpyF3I	CTNAG	2 cut(s)	82, 1039
HpySE526I	ACGT	1 cut(s)	387
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	7 cut(s)	15, 45, 193, 295, 413, 846, 994
LguI	GCTCTTC	1 cut(s)	748
LmnI	GCTCC	4 cut(s)	71, 148, 167, 617
Lsp1109I	GCAGC	1 cut(s)	384
LweI	GCATC	3 cut(s)	87, 557, 916
MaeI	CTAG	1 cut(s)	816
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	3 cut(s)	20, 49, 281
MalI	GATC	7 cut(s)	17, 47, 195, 297, 415, 848, 996
MbiI	CCGCTC	1 cut(s)	685
MboI	GATC	7 cut(s)	15, 45, 193, 295, 413, 846, 994
MboII	GAAGA	3 cut(s)	188, 419, 735
MflI	RGATCY	1 cut(s)	994
MhlI	GDGCHC	1 cut(s)	622
MlsI	TGGCCA	1 cut(s)	764
MluCI	AATT	2 cut(s)	600, 906
MluNI	TGGCCA	1 cut(s)	764
MlyI	GAGTC	4 cut(s)	119, 143, 181, 272
MnlI	CCTC	4 cut(s)	223, 235, 695, 745
Mox20I	TGGCCA	1 cut(s)	764
Mph1103I	ATGCAT	1 cut(s)	931
MscI	TGGCCA	1 cut(s)	764
MseI	TTAA	7 cut(s)	59, 317, 536, 693, 708, 758, 821
Msp20I	TGGCCA	1 cut(s)	764
MspCI	CTTAAG	1 cut(s)	316
MspR9I	CCNGG	3 cut(s)	576, 887, 978
MvaI	CCWGG	3 cut(s)	576, 887, 978
MwoI	GCNNNNNNNGC	1 cut(s)	256
NdeII	GATC	7 cut(s)	15, 45, 193, 295, 413, 846, 994
NlaIV	GGNNCC	1 cut(s)	619
NmuCI	GTSAC	2 cut(s)	20, 49
NsiI	ATGCAT	1 cut(s)	931
NspI	RCATGY	4 cut(s)	57, 93, 433, 933
PagI	TCATGA	2 cut(s)	550, 825
PciI	ACATGT	3 cut(s)	53, 89, 429
PciSI	GCTCTTC	1 cut(s)	748
PfeI	GAWTC	2 cut(s)	97, 584
PkrI	GCNGC	2 cut(s)	399, 687
PleI	GAGTC	4 cut(s)	119, 142, 181, 271
PpsI	GAGTC	4 cut(s)	119, 142, 181, 271
Ppu21I	YACGTR	1 cut(s)	388
PpuMI	RGGWCCY	2 cut(s)	244, 658
PscI	ACATGT	3 cut(s)	53, 89, 429
Psp5II	RGGWCCY	2 cut(s)	244, 658
Psp6I	CCWGG	3 cut(s)	574, 885, 976
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	3 cut(s)	574, 885, 976
PspN4I	GGNNCC	1 cut(s)	619
PspPI	GGNCC	2 cut(s)	244, 658
PspPPI	RGGWCCY	2 cut(s)	244, 658
PstI	CTGCAG	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	994
SapI	GCTCTTC	1 cut(s)	748
SaqAI	TTAA	7 cut(s)	59, 317, 536, 693, 708, 758, 821
SatI	GCNGC	2 cut(s)	398, 686
Sau3AI	GATC	7 cut(s)	15, 45, 193, 295, 413, 846, 994
Sau96I	GGNCC	2 cut(s)	244, 658
SchI	GAGTC	4 cut(s)	119, 143, 181, 272
ScrFI	CCNGG	3 cut(s)	576, 887, 978
SduI	GDGCHC	1 cut(s)	622
SfaNI	GCATC	3 cut(s)	87, 557, 916
SfcI	CTRYAG	1 cut(s)	248
SinI	GGWCC	2 cut(s)	244, 658
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
SnaBI	TACGTA	1 cut(s)	388
Sse9I	AATT	2 cut(s)	600, 906
SsiI	CCGC	2 cut(s)	558, 685
SspMI	CTAG	1 cut(s)	816
StyD4I	CCNGG	3 cut(s)	574, 885, 976
TaaI	ACNGT	2 cut(s)	217, 453
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	1 cut(s)	95
TasI	AATT	2 cut(s)	600, 906
TauI	GCSGC	1 cut(s)	688
TfiI	GAWTC	2 cut(s)	97, 584
Tru1I	TTAA	7 cut(s)	59, 317, 536, 693, 708, 758, 821
Tru9I	TTAA	7 cut(s)	59, 317, 536, 693, 708, 758, 821
TscAI	CASTG	3 cut(s)	25, 220, 257
TseFI	GTSAC	2 cut(s)	20, 49
TseI	GCWGC	1 cut(s)	397
Tsp45I	GTSAC	2 cut(s)	20, 49
TspDTI	ATGAA	6 cut(s)	17, 89, 176, 420, 830, 862
TspRI	CASTG	3 cut(s)	25, 220, 257
Vha464I	CTTAAG	1 cut(s)	316
VpaK11BI	GGWCC	2 cut(s)	244, 658
XapI	RAATTY	2 cut(s)	600, 906
XceI	RCATGY	4 cut(s)	57, 93, 433, 933
XcmI	CCANNNNNNNNNTGG	1 cut(s)	950
XspI	CTAG	1 cut(s)	816
Zsp2I	ATGCAT	1 cut(s)	931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.