Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Reverse (-)

46269453 .. 46272123

Gene Structure 2671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG316100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCAATGCCATCTCAGGAGAAGGACTCTTATGAGTCGGTTTTGATGGAGCATATAAGATTGAATGGAGCTTACTGGGGTTTGACAACTCTTGATCTTCTTGGAAAGCTTGACACTGTGGATGTCGATGAGGTTGTTTCAGAGGTCATGCAGTGCCAGCATGAATCAGGTGGCTTTGGTGGTAACAGTGGACATGATCCACACGTACTCTATACCTTAAGTGCTGTGCAGGTTTTGGCCTTATTTGACAAGGTTGATGTTTTGGATGTCGAAAAAGTTGCAGATTATGTAGCTGGACTGCAAAATGAAGATGGATCATTTTCAGGGGACATGTGGGGTGAAGTTGATACACGGTTTTCATACATTGCTATTTGTTGTCTCGCATTACTACATCTTTTGGATAAAATCAATGTGGAGAAAGCTGTGGACTATATTTTAAGTTGTAAAAATCATGATGGCGGATTTGGATGCACGCCTGGTGGGGAGTCTCATGCAGGTCAAATTTTCTGTTGTGTGGGAGCCCTTGCTATCACAGGGTCTCTACATCGTATTGACAAGGACCTTCTTGGATGGTGGTTATGCGAGCGGCAAGTTAAATCAGGTGGTCTTAATGGTCGTCCAGAGAAGCTTCCTGATGTGTGCTACTCATGGTGGGTTCTATCTAGTTTAATCATGATTGACAGGGTTCATTGGATCGATAAGCAAAAGCTTGCCAAGTTCATTTTAGACTGCCAGGACACTGAAAATGGGGGAATTTCTGATAGACCAGATGATGCATGTGATGCCTACCATACATACTTTGGTGTTGCAGGACTTTCCTTGCTTGAATATCCTGGGGTGAAAGCCATAGATCCAGCTTATGCTTTGCCAGTTGATGTTATATATGACTTGGTTAAAAGACTATGGGGTGATGAGGAGCTATTCGGTCCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

311

Amino Acids

34.31

Weight (kDa)

4.54

Isoelectric Point (pI)

25.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	13 - 288	4.4e-100	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	220, 485
AccBSI	CCGCTC	1 cut(s)	586
AciI	CCGC	2 cut(s)	459, 586
AclWI	GGATC	4 cut(s)	191, 322, 701, 845
AcsI	RAATTY	2 cut(s)	501, 753
AfaI	GTAC	1 cut(s)	207
AflII	CTTAAG	1 cut(s)	217
AflIII	ACRYGT	2 cut(s)	202, 330
AgsI	TTSAA	2 cut(s)	64, 827
AjnI	CCWGG	3 cut(s)	475, 732, 832
AluBI	AGCT	8 cut(s)	71, 109, 293, 422, 628, 709, 857, 919
AluI	AGCT	8 cut(s)	71, 109, 293, 422, 628, 709, 857, 919
Alw26I	GTCTC	3 cut(s)	383, 492, 543
AlwI	GGATC	4 cut(s)	191, 322, 701, 845
AoxI	GGCC	1 cut(s)	237
ApoI	RAATTY	2 cut(s)	501, 753
AspS9I	GGNCC	2 cut(s)	559, 926
AsuHPI	GGTGA	3 cut(s)	350, 850, 920
AvaII	GGWCC	2 cut(s)	559, 926
BanII	GRGCYC	1 cut(s)	523
BccI	CCATC	5 cut(s)	19, 40, 305, 449, 564
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BciT130I	CCWGG	3 cut(s)	477, 734, 834
BcoDI	GTCTC	3 cut(s)	383, 492, 543
BfaI	CTAG	1 cut(s)	663
BfrI	CTTAAG	1 cut(s)	217
BfuAI	ACCTGC	2 cut(s)	220, 485
BisI	GCNGC	1 cut(s)	587
BlsI	GCNGC	1 cut(s)	588
Bme1390I	CCNGG	3 cut(s)	477, 734, 834
Bme18I	GGWCC	2 cut(s)	559, 926
BmgT120I	GGNCC	2 cut(s)	559, 926
BmiI	GGNNCC	1 cut(s)	520
BmrFI	CCNGG	3 cut(s)	477, 734, 834
BmrI	ACTGGG	1 cut(s)	85
BmsI	GCATC	3 cut(s)	458, 763, 772
BmuI	ACTGGG	1 cut(s)	85
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
Bsa29I	ATCGAT	1 cut(s)	696
BsaAI	YACGTR	1 cut(s)	205
BsaI	GGTCTC	1 cut(s)	543
BsaJI	CCNNGG	1 cut(s)	833
Bse1I	ACTGG	2 cut(s)	80, 869
Bse3DI	GCAATG	2 cut(s)	12, 363
BseBI	CCWGG	3 cut(s)	477, 734, 834
BseCI	ATCGAT	1 cut(s)	696
BseDI	CCNNGG	1 cut(s)	833
BseGI	GGATG	4 cut(s)	127, 271, 473, 575
BseMI	GCAATG	2 cut(s)	12, 363
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	2 cut(s)	80, 869
BseRI	GAGGAG	1 cut(s)	929
BsgI	GTGCAG	1 cut(s)	248
BshFI	GGCC	1 cut(s)	239
BshVI	ATCGAT	1 cut(s)	696
BslFI	GGGAC	1 cut(s)	341
BsmAI	GTCTC	3 cut(s)	383, 492, 543
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	239
Bso31I	GGTCTC	1 cut(s)	543
Bsp1286I	GDGCHC	1 cut(s)	523
Bsp143I	GATC	5 cut(s)	94, 196, 314, 693, 850
BspACI	CCGC	2 cut(s)	459, 586
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	28
BspDI	ATCGAT	1 cut(s)	696
BspHI	TCATGA	2 cut(s)	451, 672
BspLI	GGNNCC	1 cut(s)	520
BspMI	ACCTGC	2 cut(s)	220, 485
BspPI	GGATC	4 cut(s)	191, 322, 701, 845
BspTI	CTTAAG	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	543
BsrBI	CCGCTC	1 cut(s)	586
BsrDI	GCAATG	2 cut(s)	12, 363
BsrI	ACTGG	2 cut(s)	80, 869
BssECI	CCNNGG	1 cut(s)	833
BssMI	GATC	5 cut(s)	94, 196, 314, 693, 850
Bst2UI	CCWGG	3 cut(s)	477, 734, 834
Bst4CI	ACNGT	3 cut(s)	118, 188, 354
BstAFI	CTTAAG	1 cut(s)	217
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstBAI	YACGTR	1 cut(s)	205
BstC8I	GCNNGC	4 cut(s)	158, 473, 584, 711
BstDEI	CTNAG	1 cut(s)	15
BstF5I	GGATG	4 cut(s)	127, 271, 473, 575
BstKTI	GATC	5 cut(s)	97, 199, 317, 696, 853
BstMAI	GTCTC	3 cut(s)	383, 492, 543
BstMBI	GATC	5 cut(s)	94, 196, 314, 693, 850
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 782
BstNI	CCWGG	3 cut(s)	477, 734, 834
BstNSI	RCATGY	2 cut(s)	334, 780
BstSCI	CCNGG	3 cut(s)	475, 732, 832
BstX2I	RGATCY	1 cut(s)	850
BstYI	RGATCY	1 cut(s)	850
Bsu15I	ATCGAT	1 cut(s)	696
BsuRI	GGCC	1 cut(s)	239
BsuTUI	ATCGAT	1 cut(s)	696
BtsCI	GGATG	4 cut(s)	127, 271, 473, 575
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	4 cut(s)	114, 158, 193, 738
BveI	ACCTGC	2 cut(s)	220, 485
Cac8I	GCNNGC	4 cut(s)	158, 473, 584, 711
CciI	TCATGA	2 cut(s)	451, 672
Cfr13I	GGNCC	2 cut(s)	559, 926
ClaI	ATCGAT	1 cut(s)	696
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	9 cut(s)	148, 161, 194, 331, 452, 491, 648, 673, 777
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	5 cut(s)	96, 198, 316, 695, 852
DpnII	GATC	5 cut(s)	94, 196, 314, 693, 850
EciI	GGCGGA	1 cut(s)	474
Eco24I	GRGCYC	1 cut(s)	523
Eco31I	GGTCTC	1 cut(s)	543
Eco47I	GGWCC	2 cut(s)	559, 926
EcoO109I	RGGNCCY	1 cut(s)	559
EcoRII	CCWGG	3 cut(s)	475, 732, 832
EcoT22I	ATGCAT	1 cut(s)	778
EcoT38I	GRGCYC	1 cut(s)	523
FaeI	CATG	9 cut(s)	151, 164, 197, 334, 455, 494, 651, 676, 780
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	9 cut(s)	147, 160, 193, 330, 451, 490, 647, 672, 776
Fnu4HI	GCNGC	1 cut(s)	587
FokI	GGATG	4 cut(s)	134, 278, 480, 582
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	1 cut(s)	587
FspBI	CTAG	1 cut(s)	663
GluI	GCNGC	1 cut(s)	587
HaeIII	GGCC	1 cut(s)	239
Hin1II	CATG	9 cut(s)	151, 164, 197, 334, 455, 494, 651, 676, 780
HindIII	AAGCTT	3 cut(s)	107, 626, 707
HinfI	GANTC	4 cut(s)	26, 35, 164, 485
HphI	GGTGA	3 cut(s)	350, 850, 920
Hpy166II	GTNNAC	2 cut(s)	191, 427
Hpy188I	TCNGA	2 cut(s)	142, 760
Hpy188III	TCNNGA	7 cut(s)	17, 92, 452, 620, 632, 673, 929
Hpy8I	GTNNAC	2 cut(s)	191, 427
HpyAV	CCTTC	2 cut(s)	16, 572
HpyCH4III	ACNGT	3 cut(s)	118, 188, 354
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	8 cut(s)	151, 229, 281, 301, 471, 494, 776, 809
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 782
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	9 cut(s)	151, 164, 197, 334, 455, 494, 651, 676, 780
Kzo9I	GATC	5 cut(s)	94, 196, 314, 693, 850
LmnI	GCTCC	4 cut(s)	49, 68, 518, 916
LweI	GCATC	3 cut(s)	458, 763, 772
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	5 cut(s)	96, 198, 316, 695, 852
MbiI	CCGCTC	1 cut(s)	586
MboI	GATC	5 cut(s)	94, 196, 314, 693, 850
MboII	GAAGA	2 cut(s)	89, 320
MflI	RGATCY	1 cut(s)	850
MhlI	GDGCHC	1 cut(s)	523
MluCI	AATT	2 cut(s)	501, 753
MlyI	GAGTC	3 cut(s)	20, 44, 494
MnlI	CCTC	3 cut(s)	124, 136, 907
Mph1103I	ATGCAT	1 cut(s)	778
MseI	TTAA	6 cut(s)	218, 437, 594, 609, 668, 894
MspCI	CTTAAG	1 cut(s)	217
MspR9I	CCNGG	3 cut(s)	477, 734, 834
MvaI	CCWGG	3 cut(s)	477, 734, 834
MwoI	GCNNNNNNNGC	2 cut(s)	157, 782
NdeII	GATC	5 cut(s)	94, 196, 314, 693, 850
NlaIII	CATG	9 cut(s)	151, 164, 197, 334, 455, 494, 651, 676, 780
NlaIV	GGNNCC	1 cut(s)	520
NsiI	ATGCAT	1 cut(s)	778
NspI	RCATGY	2 cut(s)	334, 780
PagI	TCATGA	2 cut(s)	451, 672
PciI	ACATGT	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	588
PleI	GAGTC	3 cut(s)	20, 43, 493
PpsI	GAGTC	3 cut(s)	20, 43, 493
Ppu21I	YACGTR	1 cut(s)	205
PpuMI	RGGWCCY	1 cut(s)	559
PscI	ACATGT	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	559
Psp6I	CCWGG	3 cut(s)	475, 732, 832
PspGI	CCWGG	3 cut(s)	475, 732, 832
PspN4I	GGNNCC	1 cut(s)	520
PspPI	GGNCC	2 cut(s)	559, 926
PspPPI	RGGWCCY	1 cut(s)	559
PsuI	RGATCY	1 cut(s)	850
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
SaqAI	TTAA	6 cut(s)	218, 437, 594, 609, 668, 894
SatI	GCNGC	1 cut(s)	587
Sau3AI	GATC	5 cut(s)	94, 196, 314, 693, 850
Sau96I	GGNCC	2 cut(s)	559, 926
SchI	GAGTC	3 cut(s)	20, 44, 494
ScrFI	CCNGG	3 cut(s)	477, 734, 834
SduI	GDGCHC	1 cut(s)	523
SfaNI	GCATC	3 cut(s)	458, 763, 772
SinI	GGWCC	2 cut(s)	559, 926
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	2 cut(s)	501, 753
SsiI	CCGC	2 cut(s)	459, 586
SspMI	CTAG	1 cut(s)	663
StyD4I	CCNGG	3 cut(s)	475, 732, 832
TaaI	ACNGT	3 cut(s)	118, 188, 354
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	3 cut(s)	126, 270, 696
TaqII	GACCGA	1 cut(s)	914
TasI	AATT	2 cut(s)	501, 753
TauI	GCSGC	1 cut(s)	589
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	6 cut(s)	218, 437, 594, 609, 668, 894
Tru9I	TTAA	6 cut(s)	218, 437, 594, 609, 668, 894
TscAI	CASTG	4 cut(s)	121, 158, 193, 745
TspDTI	ATGAA	5 cut(s)	177, 321, 348, 677, 709
TspRI	CASTG	4 cut(s)	121, 158, 193, 745
Vha464I	CTTAAG	1 cut(s)	217
VpaK11BI	GGWCC	2 cut(s)	559, 926
XapI	RAATTY	2 cut(s)	501, 753
XceI	RCATGY	2 cut(s)	334, 780
XcmI	CCANNNNNNNNNTGG	1 cut(s)	797
XspI	CTAG	1 cut(s)	663
Zsp2I	ATGCAT	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.