Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000158.1

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Forward (+)

7201 .. 9236

Gene Structure 2036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000158.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgccatctcaggagaaggactcttatgagtcagttttgatggagcatataagaatgaatggagcttactggggtttgacgactcttgatcttcttggaaagcttgacactgtggatgtcaatgaggtcgtttcagaggtcctgcagtgccagcatgaatcaggtgggtttggtggtaacattggacatgatccacacatactttgtaccttaagtgctgtgcaggttttggccttacttgacaaggttgatgtttggatgttgaaaatgttgcagattttttctgttgtgtcggagcccttgctatcacagggtctctacatcgtattgacaaggaccttcttggatggtggttatgtgagcggcaagttaaatcaggaggtcttaatggacattgaaaatgggggaatttctgatagaccagataatgcaagtgatgcctaccatacatacttaggtgtagcaggtatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

157

Amino Acids

17.19

Weight (kDa)

4.44

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	214, 455
AccBSI	CCGCTC	1 cut(s)	363
AciI	CCGC	1 cut(s)	363
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	408
AfaI	GTAC	1 cut(s)	208
AflII	CTTAAG	1 cut(s)	211
AgsI	TTSAA	2 cut(s)	265, 398
AluBI	AGCT	2 cut(s)	65, 103
AluI	AGCT	2 cut(s)	65, 103
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	231
ApoI	RAATTY	1 cut(s)	408
AspS9I	GGNCC	2 cut(s)	139, 336
AvaII	GGWCC	2 cut(s)	139, 336
BanII	GRGCYC	1 cut(s)	300
BccI	CCATC	3 cut(s)	13, 34, 341
BcoDI	GTCTC	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	143
BfrI	CTTAAG	1 cut(s)	211
BfuAI	ACCTGC	2 cut(s)	214, 455
BisI	GCNGC	1 cut(s)	364
BlsI	GCNGC	1 cut(s)	365
Bme18I	GGWCC	2 cut(s)	139, 336
BmgT120I	GGNCC	2 cut(s)	139, 336
BmiI	GGNNCC	1 cut(s)	297
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	1 cut(s)	427
BmuI	ACTGGG	1 cut(s)	79
BplI	GAGNNNNNCTC	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	74
BseGI	GGATG	3 cut(s)	121, 264, 352
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	242
BshFI	GGCC	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	233
Bso31I	GGTCTC	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	2 cut(s)	88, 190
BspACI	CCGC	1 cut(s)	363
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	297
BspMAI	CTGCAG	1 cut(s)	147
BspMI	ACCTGC	2 cut(s)	214, 455
BspPI	GGATC	1 cut(s)	185
BspTI	CTTAAG	1 cut(s)	211
BspTNI	GGTCTC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	74
BssMI	GATC	2 cut(s)	88, 190
Bst4CI	ACNGT	1 cut(s)	112
BstAFI	CTTAAG	1 cut(s)	211
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	2 cut(s)	9, 454
BstF5I	GGATG	3 cut(s)	121, 264, 352
BstKTI	GATC	2 cut(s)	91, 193
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	2 cut(s)	88, 190
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 437
BstSFI	CTRYAG	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	233
BtsCI	GGATG	3 cut(s)	121, 264, 352
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	2 cut(s)	108, 152
BveI	ACCTGC	2 cut(s)	214, 455
Cac8I	GCNNGC	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	139, 336
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	2 cut(s)	155, 188
CviJI	RGCY	4 cut(s)	65, 103, 233, 298
CviKI_1	RGCY	4 cut(s)	65, 103, 233, 298
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	2 cut(s)	9, 454
DpnI	GATC	2 cut(s)	90, 192
DpnII	GATC	2 cut(s)	88, 190
Eco24I	GRGCYC	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	320
Eco47I	GGWCC	2 cut(s)	139, 336
EcoO109I	RGGNCCY	2 cut(s)	139, 336
EcoT38I	GRGCYC	1 cut(s)	300
FaeI	CATG	2 cut(s)	158, 191
FatI	CATG	2 cut(s)	154, 187
Fnu4HI	GCNGC	1 cut(s)	364
FokI	GGATG	3 cut(s)	128, 271, 359
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	1 cut(s)	364
GluI	GCNGC	1 cut(s)	364
HaeIII	GGCC	1 cut(s)	233
Hin1II	CATG	2 cut(s)	158, 191
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	4 cut(s)	20, 29, 82, 158
Hpy188I	TCNGA	3 cut(s)	136, 295, 415
Hpy188III	TCNNGA	3 cut(s)	11, 86, 377
HpyAV	CCTTC	2 cut(s)	10, 349
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	4 cut(s)	145, 223, 274, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 437
HpyF3I	CTNAG	2 cut(s)	9, 454
Hsp92II	CATG	2 cut(s)	158, 191
Kzo9I	GATC	2 cut(s)	88, 190
LmnI	GCTCC	3 cut(s)	43, 62, 295
LpnPI	CCDG	9 cut(s)	55, 147, 155, 164, 209, 296, 362, 435, 450
LweI	GCATC	1 cut(s)	427
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	2 cut(s)	90, 192
MbiI	CCGCTC	1 cut(s)	363
MboI	GATC	2 cut(s)	88, 190
MboII	GAAGA	1 cut(s)	83
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	1 cut(s)	408
MlyI	GAGTC	3 cut(s)	14, 38, 76
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	3 cut(s)	118, 130, 373
MseI	TTAA	3 cut(s)	212, 371, 386
MspCI	CTTAAG	1 cut(s)	211
MwoI	GCNNNNNNNGC	2 cut(s)	151, 437
NdeII	GATC	2 cut(s)	88, 190
NlaIII	CATG	2 cut(s)	158, 191
NlaIV	GGNNCC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	365
PleI	GAGTC	3 cut(s)	14, 37, 76
PpsI	GAGTC	3 cut(s)	14, 37, 76
PpuMI	RGGWCCY	2 cut(s)	139, 336
Psp5II	RGGWCCY	2 cut(s)	139, 336
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	2 cut(s)	139, 336
PspPPI	RGGWCCY	2 cut(s)	139, 336
PstI	CTGCAG	1 cut(s)	147
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
SaqAI	TTAA	3 cut(s)	212, 371, 386
SatI	GCNGC	1 cut(s)	364
Sau3AI	GATC	2 cut(s)	88, 190
Sau96I	GGNCC	2 cut(s)	139, 336
SchI	GAGTC	3 cut(s)	14, 38, 76
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	1 cut(s)	143
SinI	GGWCC	2 cut(s)	139, 336
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	1 cut(s)	408
SsiI	CCGC	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	112
TasI	AATT	1 cut(s)	408
TauI	GCSGC	1 cut(s)	366
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	3 cut(s)	212, 371, 386
Tru9I	TTAA	3 cut(s)	212, 371, 386
TscAI	CASTG	2 cut(s)	115, 152
TspDTI	ATGAA	2 cut(s)	71, 171
TspRI	CASTG	2 cut(s)	115, 152
Vha464I	CTTAAG	1 cut(s)	211
VpaK11BI	GGWCC	2 cut(s)	139, 336
XapI	RAATTY	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.