Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Forward (+)

19415492 .. 19418272

Gene Structure 2781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001712

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGCCATCTCAGGAGAAGGACCCTTATGAGTCAGTTTTGATGGAGCATATAAGAATGAATGGTGCTTACTGGGGTTTGACGACTCTTGATCTTCTTGGAAAGCTTGATACTGTGGATGTCAATGAGGTCGTTTCAGAGGTCCTGCAGTGCCAGCATGAGTCAGGTGGGTTTGGGGGTAACATTGGACATGATCCACACGTACTTTGTACCTTAAGTGCTGTGCAGGTTTTGGCCTTATTTGACAAGGTTGATATTTTGGATGTTGAAAAGGTTGCAGATTATGTAGCTGGGCTGCAAAATGAAGATGGATCATTTTCAGGGGACATGTCGGGTGAAGTTGATACACGGTTTTCTGATATTGCTATCTGCTGTCTCGCATTACTACATCTTTTGGATAAAATCAATGTGGAGAAAGCTGTGGACTACATTTTAAGTTGTAAAAATCATGATGGCGGATTTGGATGCACGCCTGGTGGGGAATCTCATGCAGGTCAAATTTTCTGTTGTGTGGGAGCCCTTGCTATCACAGGGTCTCTACATCGTATTGACAAGGACCTTCTTGGATGGTGGTTATGTGAGCGGCAAGTTAAATCAGGAGGTCTTAATGGTCGTCCAGAGAAACTTCCTGATGTGTGCTACTCATGGTGGGTTCTATCTAGTTTAATCATGATTGACAGGGTTCATTGGATCAATAAGGAAAAGCATGCCAAGTTCATTTTAGACTGGCAGGACATTGAAAATGGGGGAATTTCTGATAGACCAGATGATGCATGTGATGCCTACCATACATACTTTGGACTTTCCTTGCTTGAATATCCTGAGGTGAAGGCCATAGATCCAGCTTATGCTTTGCCAGTTGATGTTGTAAATAGGAATATCTTAGGCATAAAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

299

Amino Acids

32.82

Weight (kDa)

4.69

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	7 - 283	3.1e-92	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	214, 479
AccBSI	CCGCTC	1 cut(s)	580
AciI	CCGC	2 cut(s)	453, 580
AclWI	GGATC	4 cut(s)	185, 316, 695, 830
AcsI	RAATTY	2 cut(s)	495, 747
AfaI	GTAC	2 cut(s)	201, 208
AflII	CTTAAG	1 cut(s)	211
AflIII	ACRYGT	2 cut(s)	196, 324
AgsI	TTSAA	3 cut(s)	266, 737, 812
AjnI	CCWGG	1 cut(s)	469
AluBI	AGCT	4 cut(s)	103, 287, 416, 842
AluI	AGCT	4 cut(s)	103, 287, 416, 842
Alw26I	GTCTC	2 cut(s)	377, 537
AlwI	GGATC	4 cut(s)	185, 316, 695, 830
AoxI	GGCC	2 cut(s)	231, 828
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	2 cut(s)	495, 747
AspS9I	GGNCC	3 cut(s)	19, 139, 553
AsuHPI	GGTGA	2 cut(s)	344, 835
AvaII	GGWCC	3 cut(s)	19, 139, 553
AxyI	CCTNAGG	1 cut(s)	819
BanII	GRGCYC	1 cut(s)	517
BbvI	GCAGC	1 cut(s)	279
BccI	CCATC	5 cut(s)	13, 34, 299, 443, 558
BciT130I	CCWGG	1 cut(s)	471
BcoDI	GTCTC	2 cut(s)	377, 537
BfaI	CTAG	1 cut(s)	657
BfmI	CTRYAG	1 cut(s)	143
BfrI	CTTAAG	1 cut(s)	211
BfuAI	ACCTGC	2 cut(s)	214, 479
BisI	GCNGC	2 cut(s)	293, 581
BlsI	GCNGC	2 cut(s)	294, 582
Bme1390I	CCNGG	1 cut(s)	471
Bme18I	GGWCC	3 cut(s)	19, 139, 553
BmgT120I	GGNCC	3 cut(s)	19, 139, 553
BmiI	GGNNCC	2 cut(s)	21, 514
BmrFI	CCNGG	1 cut(s)	471
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	3 cut(s)	452, 757, 766
BmuI	ACTGGG	1 cut(s)	79
BsaAI	YACGTR	1 cut(s)	199
BsaI	GGTCTC	1 cut(s)	537
Bse1I	ACTGG	3 cut(s)	74, 728, 854
Bse21I	CCTNAGG	1 cut(s)	819
BseBI	CCWGG	1 cut(s)	471
BseGI	GGATG	4 cut(s)	121, 265, 467, 569
BseMII	CTCAG	2 cut(s)	23, 810
BseNI	ACTGG	3 cut(s)	74, 728, 854
BseXI	GCAGC	1 cut(s)	279
BseYI	CCCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	233, 830
BslFI	GGGAC	1 cut(s)	335
BsmAI	GTCTC	2 cut(s)	377, 537
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	2 cut(s)	233, 830
Bso31I	GGTCTC	1 cut(s)	537
Bsp1286I	GDGCHC	1 cut(s)	517
Bsp143I	GATC	5 cut(s)	88, 190, 308, 687, 835
BspACI	CCGC	2 cut(s)	453, 580
BspANI	GGCC	2 cut(s)	233, 830
BspCNI	CTCAG	2 cut(s)	22, 811
BspHI	TCATGA	2 cut(s)	445, 666
BspLI	GGNNCC	2 cut(s)	21, 514
BspMAI	CTGCAG	1 cut(s)	147
BspMI	ACCTGC	2 cut(s)	214, 479
BspPI	GGATC	4 cut(s)	185, 316, 695, 830
BspTI	CTTAAG	1 cut(s)	211
BspTNI	GGTCTC	1 cut(s)	537
BsrBI	CCGCTC	1 cut(s)	580
BsrI	ACTGG	3 cut(s)	74, 728, 854
BssMI	GATC	5 cut(s)	88, 190, 308, 687, 835
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	2 cut(s)	112, 348
BstAFI	CTTAAG	1 cut(s)	211
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	3 cut(s)	152, 467, 705
BstDEI	CTNAG	3 cut(s)	9, 819, 880
BstF5I	GGATG	4 cut(s)	121, 265, 467, 569
BstKTI	GATC	5 cut(s)	91, 193, 311, 690, 838
BstMAI	GTCTC	2 cut(s)	377, 537
BstMBI	GATC	5 cut(s)	88, 190, 308, 687, 835
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 776
BstNI	CCWGG	1 cut(s)	471
BstNSI	RCATGY	3 cut(s)	328, 707, 774
BstSCI	CCNGG	1 cut(s)	469
BstSFI	CTRYAG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	835
BstYI	RGATCY	1 cut(s)	835
Bsu36I	CCTNAGG	1 cut(s)	819
BsuRI	GGCC	2 cut(s)	233, 830
BtsCI	GGATG	4 cut(s)	121, 265, 467, 569
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	152
BveI	ACCTGC	2 cut(s)	214, 479
Cac8I	GCNNGC	3 cut(s)	152, 467, 705
CciI	TCATGA	2 cut(s)	445, 666
Cfr13I	GGNCC	3 cut(s)	19, 139, 553
Csp6I	GTAC	2 cut(s)	200, 207
CviAII	CATG	9 cut(s)	155, 188, 325, 446, 485, 642, 667, 704, 771
CviJI	RGCY	8 cut(s)	103, 233, 287, 292, 416, 515, 830, 842
CviKI_1	RGCY	8 cut(s)	103, 233, 287, 292, 416, 515, 830, 842
CviQI	GTAC	2 cut(s)	200, 207
DdeI	CTNAG	3 cut(s)	9, 819, 880
DpnI	GATC	5 cut(s)	90, 192, 310, 689, 837
DpnII	GATC	5 cut(s)	88, 190, 308, 687, 835
EciI	GGCGGA	1 cut(s)	468
Eco24I	GRGCYC	1 cut(s)	517
Eco31I	GGTCTC	1 cut(s)	537
Eco47I	GGWCC	3 cut(s)	19, 139, 553
Eco81I	CCTNAGG	1 cut(s)	819
EcoO109I	RGGNCCY	3 cut(s)	19, 139, 553
EcoRII	CCWGG	1 cut(s)	469
EcoT22I	ATGCAT	1 cut(s)	772
EcoT38I	GRGCYC	1 cut(s)	517
FaeI	CATG	9 cut(s)	158, 191, 328, 449, 488, 645, 670, 707, 774
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	9 cut(s)	154, 187, 324, 445, 484, 641, 666, 703, 770
Fnu4HI	GCNGC	2 cut(s)	293, 581
FokI	GGATG	4 cut(s)	128, 272, 474, 576
FriOI	GRGCYC	1 cut(s)	517
Fsp4HI	GCNGC	2 cut(s)	293, 581
FspBI	CTAG	1 cut(s)	657
GluI	GCNGC	2 cut(s)	293, 581
GsaI	CCCAGC	1 cut(s)	291
HaeIII	GGCC	2 cut(s)	233, 830
Hin1II	CATG	9 cut(s)	158, 191, 328, 449, 488, 645, 670, 707, 774
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	4 cut(s)	29, 82, 158, 479
HphI	GGTGA	2 cut(s)	344, 835
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	3 cut(s)	136, 355, 754
Hpy188III	TCNNGA	8 cut(s)	11, 86, 446, 594, 614, 626, 667, 818
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	3 cut(s)	10, 566, 820
HpyCH4III	ACNGT	2 cut(s)	112, 348
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	7 cut(s)	145, 223, 275, 295, 465, 488, 770
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 776
HpyF3I	CTNAG	3 cut(s)	9, 819, 880
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	9 cut(s)	158, 191, 328, 449, 488, 645, 670, 707, 774
Kzo9I	GATC	5 cut(s)	88, 190, 308, 687, 835
LmnI	GCTCC	2 cut(s)	43, 512
Lsp1109I	GCAGC	1 cut(s)	279
LweI	GCATC	3 cut(s)	452, 757, 766
MaeI	CTAG	1 cut(s)	657
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	5 cut(s)	90, 192, 310, 689, 837
MbiI	CCGCTC	1 cut(s)	580
MboI	GATC	5 cut(s)	88, 190, 308, 687, 835
MboII	GAAGA	2 cut(s)	83, 314
MflI	RGATCY	1 cut(s)	835
MhlI	GDGCHC	1 cut(s)	517
MluCI	AATT	2 cut(s)	495, 747
MlyI	GAGTC	3 cut(s)	38, 76, 167
MnlI	CCTC	4 cut(s)	118, 130, 590, 814
Mph1103I	ATGCAT	1 cut(s)	772
MseI	TTAA	5 cut(s)	212, 431, 588, 603, 662
MspCI	CTTAAG	1 cut(s)	211
MspR9I	CCNGG	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	471
MwoI	GCNNNNNNNGC	2 cut(s)	151, 776
NdeII	GATC	5 cut(s)	88, 190, 308, 687, 835
NlaIII	CATG	9 cut(s)	158, 191, 328, 449, 488, 645, 670, 707, 774
NlaIV	GGNNCC	2 cut(s)	21, 514
NsiI	ATGCAT	1 cut(s)	772
NspI	RCATGY	3 cut(s)	328, 707, 774
PaeI	GCATGC	1 cut(s)	707
PagI	TCATGA	2 cut(s)	445, 666
PciI	ACATGT	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	2 cut(s)	294, 582
PleI	GAGTC	3 cut(s)	37, 76, 166
PpsI	GAGTC	3 cut(s)	37, 76, 166
Ppu21I	YACGTR	1 cut(s)	199
PpuMI	RGGWCCY	3 cut(s)	19, 139, 553
PscI	ACATGT	1 cut(s)	324
Psp5II	RGGWCCY	3 cut(s)	19, 139, 553
Psp6I	CCWGG	1 cut(s)	469
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	2 cut(s)	21, 514
PspPI	GGNCC	3 cut(s)	19, 139, 553
PspPPI	RGGWCCY	3 cut(s)	19, 139, 553
PstI	CTGCAG	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	835
RsaI	GTAC	2 cut(s)	201, 208
RsaNI	GTAC	2 cut(s)	200, 207
SaqAI	TTAA	5 cut(s)	212, 431, 588, 603, 662
SatI	GCNGC	2 cut(s)	293, 581
Sau3AI	GATC	5 cut(s)	88, 190, 308, 687, 835
Sau96I	GGNCC	3 cut(s)	19, 139, 553
SchI	GAGTC	3 cut(s)	38, 76, 167
ScrFI	CCNGG	1 cut(s)	471
SduI	GDGCHC	1 cut(s)	517
SfaNI	GCATC	3 cut(s)	452, 757, 766
SfcI	CTRYAG	1 cut(s)	143
SinI	GGWCC	3 cut(s)	19, 139, 553
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
SphI	GCATGC	1 cut(s)	707
Sse9I	AATT	2 cut(s)	495, 747
SsiI	CCGC	2 cut(s)	453, 580
SspMI	CTAG	1 cut(s)	657
StyD4I	CCNGG	1 cut(s)	469
TaaI	ACNGT	2 cut(s)	112, 348
TaiI	ACGT	1 cut(s)	201
TasI	AATT	2 cut(s)	495, 747
TauI	GCSGC	1 cut(s)	583
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	5 cut(s)	212, 431, 588, 603, 662
Tru9I	TTAA	5 cut(s)	212, 431, 588, 603, 662
TscAI	CASTG	1 cut(s)	152
TseI	GCWGC	1 cut(s)	292
TspDTI	ATGAA	4 cut(s)	71, 315, 671, 703
TspRI	CASTG	1 cut(s)	152
Vha464I	CTTAAG	1 cut(s)	211
VpaK11BI	GGWCC	3 cut(s)	19, 139, 553
XapI	RAATTY	2 cut(s)	495, 747
XceI	RCATGY	3 cut(s)	328, 707, 774
XcmI	CCANNNNNNNNNTGG	1 cut(s)	791
XspI	CTAG	1 cut(s)	657
Zsp2I	ATGCAT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.