Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Forward (+)

77503915 .. 77507891

Gene Structure 3977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG563500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGCTTGGGAAAAGGGTCCGCGGTTGATTTGCTTCTGCTAAAAGAAACGGGGTTAAATTGCGAGTCTCCATTTCCGAACTCGTCTTCGTCTTTCAATATGGCAGAGCTGGCTGCTCGGAAACATGTTCAATTCATTCTATCGAAAGCAAAGGAAAAGGATTCTTATGAATCAGTTCTGATGGAGCATATAAGATTGAATGGGGCATATTGGGGTTTGACCACTCTTGATCTTCTTGGAAAGCTTGATACTGTCGATGTCAATGAAGTTGTTTCAGAGGTCCTCCAGTGCCTGCATGAATCAGGTGGTTTTGGTGGTAACATTGGACATGACCCACACATACTTTATACCTTAAGTGCCGTGCAGGTTTTGGCCTTATTTGACAAGGTTGATGTTTTGGATACCGAAAAGGTTGCAAATTATGTAGCTGGGCTGCAAAATGAAGATGGCTCTTTTTCAGGGGACATGTGGGGTGAAGTTGATACGCGGTTTTCGTATATTGCTATCTGTTGTCTAGCATTACTACATCATTTGGATAAAATTAATGTGGAGAAGGCTGTATACTACATATTAAGTTGTAAAAATCACGATGGCGGATTTGGATGCACGCCTGGTGGAGAGTCTCATGCAGGTCAAATTTTTTGTTGTGTGGGTGCTCTAGCTATCACGGGGTCTCTACATTGTATTGACAAGGACCTTCTTGGATGGTGGTTATGTGAGCGGCAAGTGAAAGCAGGAGGTCTTAATGGCCGTCCTGAGAAGCTTCCTGATGTGTGCTACTCATGGTGGGTTCTATCTAGTTTGATCATGATTGATAGAGTTCATTGGATCAATAAGGAAAAGCTTGCCAAGTTCATTTTAGATTGTCAGGACATTGAAAATGGAGGAATTTCAGACAGACCAGATGATGCATGTGATGCCTATCATACATACTTTGGTGTAGCAGGGCTTTCCCTCCTTGAGTATCCAGGGGTGAAACCCATAGATCCAGCTTATGCTTTGCCAGTTGATGTTGTAAATAGGATTATCTTAGGCATAAAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

348

Amino Acids

38.11

Weight (kDa)

5.01

Isoelectric Point (pI)

28.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	37 - 333	4.7e-101	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	355, 620
AccBSI	CCGCTC	1 cut(s)	721
AccI	GTMKAC	1 cut(s)	561
AccII	CGCG	2 cut(s)	23, 487
AciI	CCGC	5 cut(s)	21, 23, 487, 594, 721
AclWI	GGATC	2 cut(s)	836, 980
AcoI	YGGCCR	1 cut(s)	748
AcsI	RAATTY	2 cut(s)	636, 888
AflII	CTTAAG	1 cut(s)	352
AflIII	ACRYGT	2 cut(s)	124, 465
AgsI	TTSAA	4 cut(s)	97, 131, 199, 878
AjnI	CCWGG	2 cut(s)	610, 967
AluBI	AGCT	7 cut(s)	109, 244, 428, 662, 763, 844, 992
AluI	AGCT	7 cut(s)	109, 244, 428, 662, 763, 844, 992
Alw21I	GWGCWC	1 cut(s)	658
Alw26I	GTCTC	3 cut(s)	72, 627, 678
AlwI	GGATC	2 cut(s)	836, 980
AlwNI	CAGNNNCTG	1 cut(s)	292
AoxI	GGCC	2 cut(s)	372, 748
ApeKI	GCWGC	2 cut(s)	113, 433
ApoI	RAATTY	2 cut(s)	636, 888
AseI	ATTAAT	1 cut(s)	543
Asp700I	GAANNNNTTC	1 cut(s)	174
AspS9I	GGNCC	3 cut(s)	18, 280, 694
AsuHPI	GGTGA	2 cut(s)	485, 985
AvaII	GGWCC	3 cut(s)	18, 280, 694
BarI	GAAGNNNNNNTAC	2 cut(s)	545, 577
BbsI	GAAGAC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	658
BbvI	GCAGC	2 cut(s)	100, 420
BccI	CCATC	4 cut(s)	175, 440, 584, 699
BceAI	ACGGC	2 cut(s)	344, 735
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BciT130I	CCWGG	2 cut(s)	612, 969
BciVI	GTATCC	2 cut(s)	394, 975
BclI	TGATCA	1 cut(s)	804
BcoDI	GTCTC	3 cut(s)	72, 627, 678
BfaI	CTAG	3 cut(s)	515, 659, 798
BfrI	CTTAAG	1 cut(s)	352
BfuAI	ACCTGC	2 cut(s)	355, 620
BfuI	GTATCC	2 cut(s)	394, 975
BisI	GCNGC	3 cut(s)	114, 434, 722
BlsI	GCNGC	3 cut(s)	115, 435, 723
Bme1390I	CCNGG	2 cut(s)	612, 969
Bme18I	GGWCC	3 cut(s)	18, 280, 694
BmgT120I	GGNCC	3 cut(s)	18, 280, 694
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	2 cut(s)	612, 969
BmsI	GCATC	3 cut(s)	593, 898, 907
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	980
BsaBI	GATNNNNATC	1 cut(s)	921
BsaI	GGTCTC	1 cut(s)	678
BsaJI	CCNNGG	2 cut(s)	21, 968
Bse1I	ACTGG	2 cut(s)	286, 1004
Bse8I	GATNNNNATC	1 cut(s)	921
BseBI	CCWGG	2 cut(s)	612, 969
BseDI	CCNNGG	2 cut(s)	21, 968
BseGI	GGATG	2 cut(s)	608, 710
BseJI	GATNNNNATC	1 cut(s)	921
BseMII	CTCAG	1 cut(s)	747
BseNI	ACTGG	2 cut(s)	286, 1004
BseXI	GCAGC	2 cut(s)	100, 420
BseYI	CCCAGC	1 cut(s)	428
BsgI	GTGCAG	1 cut(s)	383
Bsh1236I	CGCG	2 cut(s)	23, 487
BshFI	GGCC	2 cut(s)	374, 750
BsiHKAI	GWGCWC	1 cut(s)	658
BslFI	GGGAC	1 cut(s)	476
BsmAI	GTCTC	3 cut(s)	72, 627, 678
BsmFI	GGGAC	1 cut(s)	476
BsnI	GGCC	2 cut(s)	374, 750
Bso31I	GGTCTC	1 cut(s)	678
Bsp1286I	GDGCHC	1 cut(s)	658
Bsp143I	GATC	4 cut(s)	229, 804, 828, 985
BspACI	CCGC	5 cut(s)	21, 23, 487, 594, 721
BspANI	GGCC	2 cut(s)	374, 750
BspCNI	CTCAG	1 cut(s)	748
BspFNI	CGCG	2 cut(s)	23, 487
BspHI	TCATGA	1 cut(s)	807
BspLI	GGNNCC	1 cut(s)	19
BspMI	ACCTGC	2 cut(s)	355, 620
BspPI	GGATC	2 cut(s)	836, 980
BspTI	CTTAAG	1 cut(s)	352
BspTNI	GGTCTC	1 cut(s)	678
BsrBI	CCGCTC	1 cut(s)	721
BsrI	ACTGG	2 cut(s)	286, 1004
BssECI	CCNNGG	2 cut(s)	21, 968
BssMI	GATC	4 cut(s)	229, 804, 828, 985
BssNAI	GTATAC	1 cut(s)	562
Bst1107I	GTATAC	1 cut(s)	562
Bst2UI	CCWGG	2 cut(s)	612, 969
Bst4CI	ACNGT	1 cut(s)	253
BstAFI	CTTAAG	1 cut(s)	352
BstAPI	GCANNNNNTGC	1 cut(s)	917
BstC8I	GCNNGC	4 cut(s)	111, 293, 608, 846
BstDEI	CTNAG	2 cut(s)	756, 1030
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	2 cut(s)	608, 710
BstFNI	CGCG	2 cut(s)	23, 487
BstKTI	GATC	4 cut(s)	232, 807, 831, 988
BstMAI	GTCTC	3 cut(s)	72, 627, 678
BstMBI	GATC	4 cut(s)	229, 804, 828, 985
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 917
BstNI	CCWGG	2 cut(s)	612, 969
BstNSI	RCATGY	3 cut(s)	128, 469, 915
BstSCI	CCNGG	2 cut(s)	610, 967
BstUI	CGCG	2 cut(s)	23, 487
BstV1I	GCAGC	2 cut(s)	100, 420
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	985
BstYI	RGATCY	1 cut(s)	985
BstZ17I	GTATAC	1 cut(s)	562
BsuI	GTATCC	2 cut(s)	394, 975
BsuRI	GGCC	2 cut(s)	374, 750
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	608, 710
BtsIMutI	CAGTG	1 cut(s)	293
BveI	ACCTGC	2 cut(s)	355, 620
Cac8I	GCNNGC	4 cut(s)	111, 293, 608, 846
CaiI	CAGNNNCTG	1 cut(s)	292
CciI	TCATGA	1 cut(s)	807
Cfr13I	GGNCC	3 cut(s)	18, 280, 694
Cfr42I	CCGCGG	1 cut(s)	24
CviAII	CATG	8 cut(s)	125, 296, 329, 466, 626, 783, 808, 912
DdeI	CTNAG	2 cut(s)	756, 1030
DpnI	GATC	4 cut(s)	231, 806, 830, 987
DpnII	GATC	4 cut(s)	229, 804, 828, 985
EaeI	YGGCCR	1 cut(s)	748
EciI	GGCGGA	1 cut(s)	609
Eco31I	GGTCTC	1 cut(s)	678
Eco47I	GGWCC	3 cut(s)	18, 280, 694
EcoO109I	RGGNCCY	2 cut(s)	280, 694
EcoRII	CCWGG	2 cut(s)	610, 967
EcoT22I	ATGCAT	1 cut(s)	913
FaeI	CATG	8 cut(s)	128, 299, 332, 469, 629, 786, 811, 915
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	8 cut(s)	124, 295, 328, 465, 625, 782, 807, 911
FbaI	TGATCA	1 cut(s)	804
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	3 cut(s)	114, 434, 722
FokI	GGATG	2 cut(s)	615, 717
Fsp4HI	GCNGC	3 cut(s)	114, 434, 722
FspBI	CTAG	3 cut(s)	515, 659, 798
GluI	GCNGC	3 cut(s)	114, 434, 722
GsaI	CCCAGC	1 cut(s)	432
GsuI	CTGGAG	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	374, 750
Hin1II	CATG	8 cut(s)	128, 299, 332, 469, 629, 786, 811, 915
HindIII	AAGCTT	3 cut(s)	242, 761, 842
HinfI	GANTC	5 cut(s)	65, 161, 170, 299, 620
HphI	GGTGA	2 cut(s)	485, 985
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	5 cut(s)	78, 120, 180, 277, 895
Hpy188III	TCNNGA	6 cut(s)	227, 587, 755, 767, 808, 869
Hpy8I	GTNNAC	1 cut(s)	562
HpyAV	CCTTC	2 cut(s)	547, 707
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4V	TGCA	7 cut(s)	295, 364, 416, 436, 606, 629, 911
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 917
HpyF3I	CTNAG	2 cut(s)	756, 1030
Hsp92II	CATG	8 cut(s)	128, 299, 332, 469, 629, 786, 811, 915
Ksp22I	TGATCA	1 cut(s)	804
KspI	CCGCGG	1 cut(s)	24
Kzo9I	GATC	4 cut(s)	229, 804, 828, 985
LmnI	GCTCC	1 cut(s)	184
Lsp1109I	GCAGC	2 cut(s)	100, 420
LweI	GCATC	3 cut(s)	593, 898, 907
MaeI	CTAG	3 cut(s)	515, 659, 798
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	4 cut(s)	231, 806, 830, 987
MbiI	CCGCTC	1 cut(s)	721
MboI	GATC	4 cut(s)	229, 804, 828, 985
MboII	GAAGA	3 cut(s)	78, 224, 455
MflI	RGATCY	1 cut(s)	985
MhlI	GDGCHC	1 cut(s)	658
MluCI	AATT	6 cut(s)	58, 131, 418, 540, 636, 888
MlyI	GAGTC	2 cut(s)	74, 629
MnlI	CCTC	5 cut(s)	271, 293, 731, 878, 965
Mph1103I	ATGCAT	1 cut(s)	913
MroXI	GAANNNNTTC	1 cut(s)	174
MseI	TTAA	5 cut(s)	56, 353, 543, 572, 744
MspA1I	CMGCKG	1 cut(s)	23
MspCI	CTTAAG	1 cut(s)	352
MspR9I	CCNGG	2 cut(s)	612, 969
MvaI	CCWGG	2 cut(s)	612, 969
MvnI	CGCG	2 cut(s)	23, 487
MwoI	GCNNNNNNNGC	2 cut(s)	110, 917
NdeII	GATC	4 cut(s)	229, 804, 828, 985
NlaIII	CATG	8 cut(s)	128, 299, 332, 469, 629, 786, 811, 915
NlaIV	GGNNCC	1 cut(s)	19
NsiI	ATGCAT	1 cut(s)	913
NspI	RCATGY	3 cut(s)	128, 469, 915
PagI	TCATGA	1 cut(s)	807
PciI	ACATGT	2 cut(s)	124, 465
PcsI	WCGNNNNNNNCGW	1 cut(s)	491
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	3 cut(s)	161, 170, 299
PkrI	GCNGC	3 cut(s)	115, 435, 723
PleI	GAGTC	2 cut(s)	73, 628
PpsI	GAGTC	2 cut(s)	73, 628
PpuMI	RGGWCCY	2 cut(s)	280, 694
PscI	ACATGT	2 cut(s)	124, 465
PshBI	ATTAAT	1 cut(s)	543
Psp5II	RGGWCCY	2 cut(s)	280, 694
Psp6I	CCWGG	2 cut(s)	610, 967
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	2 cut(s)	610, 967
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	3 cut(s)	18, 280, 694
PspPPI	RGGWCCY	2 cut(s)	280, 694
PstNI	CAGNNNCTG	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	985
SacII	CCGCGG	1 cut(s)	24
SaqAI	TTAA	5 cut(s)	56, 353, 543, 572, 744
SatI	GCNGC	3 cut(s)	114, 434, 722
Sau3AI	GATC	4 cut(s)	229, 804, 828, 985
Sau96I	GGNCC	3 cut(s)	18, 280, 694
SchI	GAGTC	2 cut(s)	74, 629
ScrFI	CCNGG	2 cut(s)	612, 969
SduI	GDGCHC	1 cut(s)	658
SfaNI	GCATC	3 cut(s)	593, 898, 907
Sfr303I	CCGCGG	1 cut(s)	24
SgrBI	CCGCGG	1 cut(s)	24
SinI	GGWCC	3 cut(s)	18, 280, 694
SmlI	CTYRAG	2 cut(s)	352, 959
SmoI	CTYRAG	2 cut(s)	352, 959
Sse9I	AATT	6 cut(s)	58, 131, 418, 540, 636, 888
SsiI	CCGC	5 cut(s)	21, 23, 487, 594, 721
SspMI	CTAG	3 cut(s)	515, 659, 798
StyD4I	CCNGG	2 cut(s)	610, 967
TaaI	ACNGT	1 cut(s)	253
TaqI	TCGA	2 cut(s)	143, 255
TasI	AATT	6 cut(s)	58, 131, 418, 540, 636, 888
TauI	GCSGC	1 cut(s)	724
TfiI	GAWTC	3 cut(s)	161, 170, 299
Tru1I	TTAA	5 cut(s)	56, 353, 543, 572, 744
Tru9I	TTAA	5 cut(s)	56, 353, 543, 572, 744
TscAI	CASTG	1 cut(s)	293
TseI	GCWGC	2 cut(s)	113, 433
TspDTI	ATGAA	7 cut(s)	124, 183, 279, 312, 456, 812, 844
TspRI	CASTG	1 cut(s)	293
Vha464I	CTTAAG	1 cut(s)	352
VpaK11BI	GGWCC	3 cut(s)	18, 280, 694
VspI	ATTAAT	1 cut(s)	543
XapI	RAATTY	2 cut(s)	636, 888
XceI	RCATGY	3 cut(s)	128, 469, 915
XmiI	GTMKAC	1 cut(s)	561
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	3 cut(s)	515, 659, 798
Zsp2I	ATGCAT	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.