Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Forward (+)

17431349 .. 17433541

Gene Structure 2193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G225800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCGGAGCTGGCGACTCAGAAACATGTTCAATTCATTCTTTCAGTCGAAAAGAAGGAGGACTGTTTGGAGTCTCTGGCGATGGAGCATCTAAGAATGAATTGGGCACACTGGGGTTTGACCACTCTTGATCTTCTCGGAAAGCTTCACACTGTGGATGCCGATGAGGTTGTTTCCTGGGCCTCCAGTGGGTTTGGCGGTAACATTGGGCATGATCCACACATACTATATACCTTAAGTGCTGTGCAGGTTTTGGCCTTATTTGACAATATTGAAGTTCTGGATGTTGACAGGGTTGCAAATTATGTCGCTATGCTGCAAAATAAAGATGGATCTTTTAACGGGAACATGTGGGGTGAAAAGGCAGTGAACTACATTGTAAGTTGTAAAAATCATGATGACGGATTTGGATGCACGTCTGGTGGGGAGTCTCATGCAACTCAAAGAATTTCTGACAGACCATATGATGCTGTTGATGTCTACCACACATACTTTGGTGTAGCTGGTCTTTCCCTTCTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

175

Amino Acids

19.23

Weight (kDa)

4.91

Isoelectric Point (pI)

25.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	238
AccI	GTMKAC	1 cut(s)	480
AciI	CCGC	2 cut(s)	5, 198
AclWI	GGATC	2 cut(s)	209, 340
AcsI	RAATTY	1 cut(s)	447
AdeI	CACNNNGTG	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	189
AflII	CTTAAG	1 cut(s)	235
AflIII	ACRYGT	2 cut(s)	25, 348
AgsI	TTSAA	2 cut(s)	32, 275
AjiI	CACGTC	1 cut(s)	417
AjnI	CCWGG	1 cut(s)	176
AluBI	AGCT	3 cut(s)	10, 145, 503
AluI	AGCT	3 cut(s)	10, 145, 503
Alw26I	GTCTC	2 cut(s)	78, 435
AlwI	GGATC	2 cut(s)	209, 340
AoxI	GGCC	2 cut(s)	180, 255
ApeKI	GCWGC	1 cut(s)	316
ApoI	RAATTY	1 cut(s)	447
AspS9I	GGNCC	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	368
BaeGI	GKGCMC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	303
BccI	CCATC	2 cut(s)	76, 323
BciT130I	CCWGG	1 cut(s)	178
BcoDI	GTCTC	2 cut(s)	78, 435
BfrI	CTTAAG	1 cut(s)	235
BfuAI	ACCTGC	1 cut(s)	238
BisI	GCNGC	1 cut(s)	317
BlsI	GCNGC	1 cut(s)	318
Bme1390I	CCNGG	1 cut(s)	178
BmgBI	CACGTC	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	178
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	4 cut(s)	97, 148, 401, 457
BmuI	ACTGGG	1 cut(s)	121
BpmI	CTGGAG	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	2 cut(s)	116, 186
BseBI	CCWGG	1 cut(s)	178
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	3 cut(s)	163, 289, 416
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	2 cut(s)	116, 186
BseSI	GKGCMC	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	303
BsgI	GTGCAG	1 cut(s)	266
BshFI	GGCC	2 cut(s)	182, 257
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	2 cut(s)	78, 435
BsnI	GGCC	2 cut(s)	182, 257
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	3 cut(s)	130, 214, 332
BspACI	CCGC	2 cut(s)	5, 198
BspANI	GGCC	2 cut(s)	182, 257
BspCNI	CTCAG	1 cut(s)	31
BspHI	TCATGA	1 cut(s)	394
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	2 cut(s)	209, 340
BspTI	CTTAAG	1 cut(s)	235
BsrI	ACTGG	2 cut(s)	116, 186
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	3 cut(s)	130, 214, 332
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	2 cut(s)	65, 154
BstAFI	CTTAAG	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	2 cut(s)	18, 92
BstF5I	GGATG	3 cut(s)	163, 289, 416
BstKTI	GATC	3 cut(s)	133, 217, 335
BstMAI	GTCTC	2 cut(s)	78, 435
BstMBI	GATC	3 cut(s)	130, 214, 332
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	178
BstNSI	RCATGY	2 cut(s)	29, 352
BstSCI	CCNGG	1 cut(s)	176
BstSLI	GKGCMC	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BsuRI	GGCC	2 cut(s)	182, 257
BtgZI	GCGATG	1 cut(s)	95
BtrI	CACGTC	1 cut(s)	417
BtsCI	GGATG	3 cut(s)	163, 289, 416
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	4 cut(s)	109, 150, 193, 372
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	12
CciI	TCATGA	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	180
CviAII	CATG	5 cut(s)	26, 212, 349, 395, 434
CviJI	RGCY	5 cut(s)	10, 145, 182, 257, 503
CviKI_1	RGCY	5 cut(s)	10, 145, 182, 257, 503
DdeI	CTNAG	2 cut(s)	18, 92
DpnI	GATC	3 cut(s)	132, 216, 334
DpnII	GATC	3 cut(s)	130, 214, 332
DraIII	CACNNNGTG	1 cut(s)	154
EciI	GGCGGA	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	176
FaeI	CATG	5 cut(s)	29, 215, 352, 398, 437
FatI	CATG	5 cut(s)	25, 211, 348, 394, 433
FauNDI	CATATG	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	1 cut(s)	317
FokI	GGATG	3 cut(s)	170, 296, 423
Fsp4HI	GCNGC	1 cut(s)	317
GluI	GCNGC	1 cut(s)	317
GsuI	CTGGAG	1 cut(s)	169
HaeIII	GGCC	2 cut(s)	182, 257
Hin1II	CATG	5 cut(s)	29, 215, 352, 398, 437
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	3 cut(s)	16, 71, 428
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	3 cut(s)	289, 370, 481
Hpy188I	TCNGA	3 cut(s)	21, 140, 454
Hpy188III	TCNNGA	4 cut(s)	128, 281, 395, 518
Hpy8I	GTNNAC	3 cut(s)	289, 370, 481
HpyAV	CCTTC	2 cut(s)	49, 524
HpyCH4III	ACNGT	2 cut(s)	65, 154
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	5 cut(s)	247, 299, 319, 414, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	18, 92
HpySE526I	ACGT	1 cut(s)	416
Hsp92II	CATG	5 cut(s)	29, 215, 352, 398, 437
Kzo9I	GATC	3 cut(s)	130, 214, 332
LmnI	GCTCC	2 cut(s)	7, 85
Lsp1109I	GCAGC	1 cut(s)	303
LweI	GCATC	4 cut(s)	97, 148, 401, 457
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	3 cut(s)	132, 216, 334
MboI	GATC	3 cut(s)	130, 214, 332
MboII	GAAGA	1 cut(s)	125
MflI	RGATCY	1 cut(s)	332
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	4 cut(s)	32, 100, 301, 447
MlyI	GAGTC	3 cut(s)	10, 80, 437
MnlI	CCTC	3 cut(s)	52, 160, 193
MseI	TTAA	2 cut(s)	236, 339
MspCI	CTTAAG	1 cut(s)	235
MspR9I	CCNGG	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	178
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	3 cut(s)	130, 214, 332
NlaIII	CATG	5 cut(s)	29, 215, 352, 398, 437
NspI	RCATGY	2 cut(s)	29, 352
PagI	TCATGA	1 cut(s)	394
PciI	ACATGT	2 cut(s)	25, 348
PkrI	GCNGC	1 cut(s)	318
PleI	GAGTC	3 cut(s)	10, 79, 436
PpsI	GAGTC	3 cut(s)	10, 79, 436
PscI	ACATGT	2 cut(s)	25, 348
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	236, 339
SatI	GCNGC	1 cut(s)	317
Sau3AI	GATC	3 cut(s)	130, 214, 332
Sau96I	GGNCC	1 cut(s)	180
SchI	GAGTC	3 cut(s)	10, 80, 437
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	7 cut(s)	12, 147, 171, 236, 252, 419, 505
SfaNI	GCATC	4 cut(s)	97, 148, 401, 457
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	4 cut(s)	32, 100, 301, 447
SsiI	CCGC	2 cut(s)	5, 198
SspI	AATATT	1 cut(s)	271
StyD4I	CCNGG	1 cut(s)	176
TaaI	ACNGT	2 cut(s)	65, 154
TaiI	ACGT	1 cut(s)	419
TaqI	TCGA	1 cut(s)	48
TasI	AATT	4 cut(s)	32, 100, 301, 447
Tru1I	TTAA	2 cut(s)	236, 339
Tru9I	TTAA	2 cut(s)	236, 339
TscAI	CASTG	4 cut(s)	116, 157, 193, 372
TseI	GCWGC	1 cut(s)	316
TspDTI	ATGAA	2 cut(s)	25, 113
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	4 cut(s)	116, 157, 193, 372
Vha464I	CTTAAG	1 cut(s)	235
XapI	RAATTY	1 cut(s)	447
XceI	RCATGY	2 cut(s)	29, 352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	491
XmiI	GTMKAC	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.