Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Forward (+)

18303999 .. 18305254

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00232640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCGGATTTGGATGCACGCCTGGTGGGGGAGTCTCATGCAGGTCAAATTTTCTGTTGTGTGGGAGCCGCTATCACAGGGTCTCTACATCGTATTTACAAGGACCTTCTTGGATGGTGGTTATGTGAGCGGCAAGTTAAATCAGGAGGTCTTAATGGTCGTCCAGTGAAGCTTCCTGATGTGGGTGTTGCATTAACTGGTGACGATAAGGCATTGGACTTGAAAAATTGCGGCTCCTGGTTCTCAGACATTACGGTCTCAGGCTCCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

90

Amino Acids

9.56

Weight (kDa)

6.02

Isoelectric Point (pI)

10.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	10 - 61	4.5e-12	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	32
AccBSI	CCGCTC	1 cut(s)	130
AciI	CCGC	4 cut(s)	5, 69, 130, 231
AcsI	RAATTY	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	28, 182
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	2 cut(s)	21, 236
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
Alw26I	GTCTC	3 cut(s)	39, 87, 262
ApoI	RAATTY	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	103
BccI	CCATC	1 cut(s)	108
BciT130I	CCWGG	2 cut(s)	23, 238
BcoDI	GTCTC	3 cut(s)	39, 87, 262
BfuAI	ACCTGC	1 cut(s)	32
BisI	GCNGC	3 cut(s)	69, 131, 232
BlsI	GCNGC	3 cut(s)	70, 132, 233
Bme1390I	CCNGG	2 cut(s)	23, 238
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	3 cut(s)	67, 235, 265
BmrFI	CCNGG	2 cut(s)	23, 238
BmsI	GCATC	1 cut(s)	4
BsaI	GGTCTC	2 cut(s)	87, 262
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 182
Bse1I	ACTGG	2 cut(s)	164, 202
BseBI	CCWGG	2 cut(s)	23, 238
BseGI	GGATG	2 cut(s)	19, 119
BseLI	CCNNNNNNNGG	2 cut(s)	28, 182
BseMII	CTCAG	2 cut(s)	258, 273
BseNI	ACTGG	2 cut(s)	164, 202
BslI	CCNNNNNNNGG	2 cut(s)	28, 182
BsmAI	GTCTC	3 cut(s)	39, 87, 262
Bso31I	GGTCTC	2 cut(s)	87, 262
BspACI	CCGC	4 cut(s)	5, 69, 130, 231
BspCNI	CTCAG	2 cut(s)	257, 272
BspLI	GGNNCC	3 cut(s)	67, 235, 265
BspMI	ACCTGC	1 cut(s)	32
BspTNI	GGTCTC	2 cut(s)	87, 262
BsrBI	CCGCTC	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	164, 202
Bst2UI	CCWGG	2 cut(s)	23, 238
Bst4CI	ACNGT	1 cut(s)	256
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	2 cut(s)	244, 259
BstF5I	GGATG	2 cut(s)	19, 119
BstMAI	GTCTC	3 cut(s)	39, 87, 262
BstNI	CCWGG	2 cut(s)	23, 238
BstSCI	CCNGG	2 cut(s)	21, 236
BtsCI	GGATG	2 cut(s)	19, 119
BtsIMutI	CAGTG	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	103
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	4 cut(s)	68, 172, 234, 264
CviKI_1	RGCY	4 cut(s)	68, 172, 234, 264
DdeI	CTNAG	2 cut(s)	244, 259
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
EciI	GGCGGA	1 cut(s)	20
Eco31I	GGTCTC	2 cut(s)	87, 262
Eco47I	GGWCC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	103
EcoRII	CCWGG	2 cut(s)	21, 236
FaeI	CATG	1 cut(s)	41
FaiI	YATR	2 cut(s)	39, 124
FatI	CATG	1 cut(s)	37
Fnu4HI	GCNGC	3 cut(s)	69, 131, 232
FokI	GGATG	2 cut(s)	26, 126
Fsp4HI	GCNGC	3 cut(s)	69, 131, 232
GluI	GCNGC	3 cut(s)	69, 131, 232
Hin1II	CATG	1 cut(s)	41
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	1 cut(s)	32
HphI	GGTGA	1 cut(s)	212
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	2 cut(s)	144, 176
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4V	TGCA	3 cut(s)	17, 41, 191
HpyF3I	CTNAG	2 cut(s)	244, 259
Hsp92II	CATG	1 cut(s)	41
LmnI	GCTCC	3 cut(s)	65, 239, 269
LweI	GCATC	1 cut(s)	4
MaeIII	GTNAC	1 cut(s)	200
MbiI	CCGCTC	1 cut(s)	130
MluCI	AATT	2 cut(s)	48, 226
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	1 cut(s)	140
MseI	TTAA	3 cut(s)	138, 153, 194
MspR9I	CCNGG	2 cut(s)	23, 238
MvaI	CCWGG	2 cut(s)	23, 238
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	3 cut(s)	67, 235, 265
NmuCI	GTSAC	1 cut(s)	200
PkrI	GCNGC	3 cut(s)	70, 132, 233
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PpuMI	RGGWCCY	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	103
Psp6I	CCWGG	2 cut(s)	21, 236
PspGI	CCWGG	2 cut(s)	21, 236
PspN4I	GGNNCC	3 cut(s)	67, 235, 265
PspPI	GGNCC	1 cut(s)	103
PspPPI	RGGWCCY	1 cut(s)	103
SaqAI	TTAA	3 cut(s)	138, 153, 194
SatI	GCNGC	3 cut(s)	69, 131, 232
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	2 cut(s)	23, 238
SetI	ASST	4 cut(s)	46, 108, 151, 174
SfaNI	GCATC	1 cut(s)	4
SinI	GGWCC	1 cut(s)	103
Sse9I	AATT	2 cut(s)	48, 226
SsiI	CCGC	4 cut(s)	5, 69, 130, 231
StyD4I	CCNGG	2 cut(s)	21, 236
TaaI	ACNGT	1 cut(s)	256
TasI	AATT	2 cut(s)	48, 226
TauI	GCSGC	3 cut(s)	71, 133, 234
Tru1I	TTAA	3 cut(s)	138, 153, 194
Tru9I	TTAA	3 cut(s)	138, 153, 194
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	200
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.